PMC:7417198 / 9641-12321
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T56 | 142-167 | Body_part | denotes | mucous membranes of mouth | http://purl.org/sig/ont/fma/fma59660 |
| T57 | 169-173 | Body_part | denotes | nose | http://purl.org/sig/ont/fma/fma46472 |
| T58 | 179-183 | Body_part | denotes | eyes | http://purl.org/sig/ont/fma/fma54448 |
| T59 | 343-349 | Body_part | denotes | mucosa | http://purl.org/sig/ont/fma/fma85355 |
| T60 | 1271-1276 | Body_part | denotes | skull | http://purl.org/sig/ont/fma/fma46565 |
| T61 | 1429-1437 | Body_part | denotes | cavities | http://purl.org/sig/ont/fma/fma76576 |
| T62 | 1789-1793 | Body_part | denotes | face | http://purl.org/sig/ont/fma/fma24728 |
| T63 | 1809-1813 | Body_part | denotes | nose | http://purl.org/sig/ont/fma/fma46472 |
| T64 | 1896-1901 | Body_part | denotes | skull | http://purl.org/sig/ont/fma/fma46565 |
| T65 | 1990-1994 | Body_part | denotes | face | http://purl.org/sig/ont/fma/fma24728 |
| T66 | 2212-2216 | Body_part | denotes | face | http://purl.org/sig/ont/fma/fma24728 |
| T67 | 2291-2295 | Body_part | denotes | nose | http://purl.org/sig/ont/fma/fma46472 |
| T68 | 2664-2671 | Body_part | denotes | nostril | http://purl.org/sig/ont/fma/fma59645 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T37 | 142-158 | Body_part | denotes | mucous membranes | http://purl.obolibrary.org/obo/UBERON_0000344 |
| T38 | 162-167 | Body_part | denotes | mouth | http://purl.obolibrary.org/obo/UBERON_0000165 |
| T39 | 169-173 | Body_part | denotes | nose | http://purl.obolibrary.org/obo/UBERON_0000004 |
| T40 | 343-349 | Body_part | denotes | mucosa | http://purl.obolibrary.org/obo/UBERON_0000344 |
| T41 | 1271-1276 | Body_part | denotes | skull | http://purl.obolibrary.org/obo/UBERON_0003129 |
| T42 | 1789-1793 | Body_part | denotes | face | http://purl.obolibrary.org/obo/UBERON_0001456 |
| T43 | 1809-1813 | Body_part | denotes | nose | http://purl.obolibrary.org/obo/UBERON_0000004 |
| T44 | 1896-1901 | Body_part | denotes | skull | http://purl.obolibrary.org/obo/UBERON_0003129 |
| T45 | 1990-1994 | Body_part | denotes | face | http://purl.obolibrary.org/obo/UBERON_0001456 |
| T46 | 2212-2216 | Body_part | denotes | face | http://purl.obolibrary.org/obo/UBERON_0001456 |
| T47 | 2291-2295 | Body_part | denotes | nose | http://purl.obolibrary.org/obo/UBERON_0000004 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T37 | 11-19 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T38 | 500-508 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T39 | 536-544 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T40 | 739-747 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T41 | 1000-1008 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T42 | 1038-1047 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T43 | 1199-1203 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T44 | 1365-1373 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T45 | 1613-1621 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T46 | 1941-1949 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T47 | 2481-2488 | Disease | denotes | sterile | http://purl.obolibrary.org/obo/MONDO_0005047 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T77 | 142-158 | http://purl.obolibrary.org/obo/UBERON_0000344 | denotes | mucous membranes |
| T78 | 162-167 | http://www.ebi.ac.uk/efo/EFO_0000825 | denotes | mouth |
| T79 | 169-173 | http://www.ebi.ac.uk/efo/EFO_0000828 | denotes | nose |
| T80 | 179-183 | http://www.ebi.ac.uk/efo/EFO_0000827 | denotes | eyes |
| T81 | 268-270 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T82 | 343-349 | http://purl.obolibrary.org/obo/UBERON_0000344 | denotes | mucosa |
| T83 | 400-402 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T84 | 954-955 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T85 | 1115-1125 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activities |
| T86 | 1429-1437 | http://purl.obolibrary.org/obo/UBERON_0002553 | denotes | cavities |
| T87 | 1787-1788 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T88 | 1789-1793 | http://purl.obolibrary.org/obo/UBERON_0001456 | denotes | face |
| T89 | 1807-1808 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T90 | 1809-1813 | http://www.ebi.ac.uk/efo/EFO_0000828 | denotes | nose |
| T91 | 1922-1923 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T92 | 1990-1994 | http://purl.obolibrary.org/obo/UBERON_0001456 | denotes | face |
| T93 | 2024-2030 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T94 | 2182-2187 | http://purl.obolibrary.org/obo/UBERON_0007688 | denotes | field |
| T95 | 2212-2216 | http://purl.obolibrary.org/obo/UBERON_0001456 | denotes | face |
| T96 | 2252-2257 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T97 | 2291-2295 | http://www.ebi.ac.uk/efo/EFO_0000828 | denotes | nose |
| T98 | 2377-2378 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T99 | 2459-2460 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T6 | 989-996 | Chemical | denotes | carrier | http://purl.obolibrary.org/obo/CHEBI_78059 |
| T7 | 1277-1281 | Chemical | denotes | base | http://purl.obolibrary.org/obo/CHEBI_22695 |
| T8 | 1902-1906 | Chemical | denotes | base | http://purl.obolibrary.org/obo/CHEBI_22695 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 94 | 194-200 | Species | denotes | people | Tax:9606 |
| 95 | 11-19 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 97 | 500-508 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 107 | 510-518 | Species | denotes | Patients | Tax:9606 |
| 108 | 655-662 | Species | denotes | patient | Tax:9606 |
| 109 | 720-728 | Species | denotes | Patients | Tax:9606 |
| 110 | 977-985 | Species | denotes | patients | Tax:9606 |
| 111 | 1000-1010 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 112 | 704-718 | Chemical | denotes | et valetudinem | |
| 113 | 536-544 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 114 | 739-747 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 115 | 1038-1047 | Disease | denotes | infection | MESH:D007239 |
| 117 | 1199-1208 | Species | denotes | SARS-CoV2 | Tax:2697049 |
| 120 | 1365-1373 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 121 | 1613-1621 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 124 | 1856-1863 | Species | denotes | patient | Tax:9606 |
| 125 | 1941-1949 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T56 | 0-10 | Sentence | denotes | Discussion |
| T57 | 11-272 | Sentence | denotes | COVID-19 requires meticulous precautions in order of limiting person-to-person spread, being respiratory droplets deposited on the mucous membranes of mouth, nose, and eyes of nearby people and by close personal contact, the main routes of diffusion [2, 8, 18]. |
| T58 | 273-412 | Sentence | denotes | Accordingly, medical and surgical maneuvers involving the respiratory mucosa were immediately considered high-risk procedures [11, 16, 24]. |
| T59 | 413-509 | Sentence | denotes | It should be remembered that an otorhinolaryngologist was the first doctor to die from COVID-19. |
| T60 | 510-719 | Sentence | denotes | Patients with symptomatic COVID-19 should be treated for neurosurgical disease only when surgery is not deferrable, namely when delaying it, the patient is exposed to concrete risks quoad vitam et valetudinem. |
| T61 | 720-939 | Sentence | denotes | Patients harboring COVID-19 represent the main source of viral transmission and therefore must be treated in an adequate in hospital setting with personnel being provided of adequate personal protective equipment (PPE). |
| T62 | 940-1061 | Sentence | denotes | Additionally, a quite vast number of patients be carrier of SARS-CoV-2 and can be responsible for infection transmission. |
| T63 | 1062-1209 | Sentence | denotes | Considering the above, caseload reduced, and routine activities have been cancelled and/or postponed if possible, to limit the spread of SARS-CoV2. |
| T64 | 1210-1496 | Sentence | denotes | Neurosurgical scientific societies identified the transnasal skull base surgery, transoral and transfacial corridors, as the most riskful for diffusion of COVID-19 and also recommended to spare the opening of paranasal cavities and mastoids during transcranial corridors [7, 19–21, 23]. |
| T65 | 1497-1757 | Sentence | denotes | To our knowledge, “maximally safe” protocols for performing neurosurgical procedures, while minimizing the risks of COVID-19 diffusion, include the use of adequate PPE, OR settings, and the advice of reducing aerosol/droplets generating maneuvers [15, 19, 21]. |
| T66 | 1758-1824 | Sentence | denotes | Our study reports the use of a face mask, namely a nose lid (Figs. |
| T67 | 1825-1970 | Sentence | denotes | 1 and 2), to be applied to the patient during endonasal procedures for skull base pathologies as a further possible COVID-19 mitigation strategy. |
| T68 | 1971-2159 | Sentence | denotes | Numerous models of face masks have been proposed and tested by individual users, researchers, doctors, and commercial entities with varying degrees of success in other disciplines [9, 14]. |
| T69 | 2160-2258 | Sentence | denotes | At the moment, in our field, there are no models of face masks to contain the spread of the virus. |
| T70 | 2259-2426 | Sentence | denotes | In our case, the mask, i.e. the nose lid, it is cheap, promptly available and can be easily assembled with the use of a few tools that we all have available in the OR. |
| T71 | 2427-2505 | Sentence | denotes | The necessary materials include a non-latex glove and sterile protective film. |
| T72 | 2506-2680 | Sentence | denotes | This mask allows to both operating surgeon and his assistant to perform wider surgical maneuvers throughout the slits, without ripping it, while limiting the nostril airflow. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T138 | 11-19 | SP_7 | denotes | COVID-19 |
| T139 | 73-79 | NCBITaxon:9606 | denotes | person |
| T140 | 83-89 | NCBITaxon:9606 | denotes | person |
| T141 | 104-115 | UBERON:0001004 | denotes | respiratory |
| T142 | 142-148 | UBERON:0000912 | denotes | mucous |
| T143 | 162-167 | UBERON:0003729 | denotes | mouth |
| T144 | 169-173 | UBERON:0000004 | denotes | nose |
| T145 | 179-183 | UBERON:0000970 | denotes | eyes |
| T146 | 194-200 | NCBITaxon:9606 | denotes | people |
| T147 | 331-342 | UBERON:0001004 | denotes | respiratory |
| T148 | 343-349 | UBERON:0000344 | denotes | mucosa |
| T149 | 445-466 | UBERON:0002280 | denotes | otorhinolaryngologist |
| T150 | 491-494 | GO:0016265 | denotes | die |
| T151 | 500-508 | SP_7 | denotes | COVID-19 |
| T152 | 536-544 | SP_7 | denotes | COVID-19 |
| T153 | 739-747 | SP_7 | denotes | COVID-19 |
| T154 | 777-782 | NCBITaxon:10239 | denotes | viral |
| T155 | 1000-1010 | SP_7 | denotes | SARS-CoV-2 |
| T156 | 1199-1208 | SP_7 | denotes | SARS-CoV2 |
| T157 | 1271-1276 | UBERON:0003129 | denotes | skull |
| T158 | 1277-1281 | UBERON:0002298 | denotes | base |
| T159 | 1365-1373 | SP_7 | denotes | COVID-19 |
| T160 | 1419-1428 | UBERON:0003077 | denotes | paranasal |
| T161 | 1429-1437 | UBERON:0001707 | denotes | cavities |
| T162 | 1442-1450 | UBERON:0003082 | denotes | mastoids |
| T163 | 1613-1621 | SP_7 | denotes | COVID-19 |
| T164 | 1789-1793 | UBERON:0001456 | denotes | face |
| T165 | 1809-1813 | UBERON:0000004 | denotes | nose |
| T166 | 1814-1817 | UBERON:0001711 | denotes | lid |
| T167 | 1871-1880 | UBERON:0001852 | denotes | endonasal |
| T168 | 1896-1901 | UBERON:0003129 | denotes | skull |
| T169 | 1902-1906 | UBERON:0001678 | denotes | base |
| T170 | 1941-1949 | SP_7 | denotes | COVID-19 |
| T171 | 1990-1994 | UBERON:0001456 | denotes | face |
| T172 | 2212-2216 | UBERON:0001456 | denotes | face |
| T173 | 2252-2257 | NCBITaxon:10239 | denotes | virus |
| T174 | 2291-2295 | UBERON:0000004 | denotes | nose |
| T175 | 2296-2299 | UBERON:0001711 | denotes | lid |
| T176 | 2664-2671 | UBERON:0002109 | denotes | nostril |
| T92315 | 11-19 | SP_7 | denotes | COVID-19 |
| T49348 | 73-79 | NCBITaxon:9606 | denotes | person |
| T8990 | 83-89 | NCBITaxon:9606 | denotes | person |
| T17702 | 104-115 | UBERON:0001004 | denotes | respiratory |
| T43071 | 142-148 | UBERON:0000912 | denotes | mucous |
| T70568 | 162-167 | UBERON:0003729 | denotes | mouth |
| T67245 | 169-173 | UBERON:0000004 | denotes | nose |
| T75083 | 179-183 | UBERON:0000970 | denotes | eyes |
| T50219 | 194-200 | NCBITaxon:9606 | denotes | people |
| T55223 | 331-342 | UBERON:0001004 | denotes | respiratory |
| T27993 | 343-349 | UBERON:0000344 | denotes | mucosa |
| T38620 | 445-466 | UBERON:0002280 | denotes | otorhinolaryngologist |
| T37308 | 491-494 | GO:0016265 | denotes | die |
| T49489 | 500-508 | SP_7 | denotes | COVID-19 |
| T33487 | 536-544 | SP_7 | denotes | COVID-19 |
| T75984 | 739-747 | SP_7 | denotes | COVID-19 |
| T74195 | 777-782 | NCBITaxon:10239 | denotes | viral |
| T7368 | 1000-1010 | SP_7 | denotes | SARS-CoV-2 |
| T24557 | 1199-1208 | SP_7 | denotes | SARS-CoV2 |
| T99580 | 1271-1276 | UBERON:0003129 | denotes | skull |
| T84145 | 1277-1281 | UBERON:0002298 | denotes | base |
| T42938 | 1365-1373 | SP_7 | denotes | COVID-19 |
| T79453 | 1419-1428 | UBERON:0003077 | denotes | paranasal |
| T85762 | 1429-1437 | UBERON:0001707 | denotes | cavities |
| T76531 | 1442-1450 | UBERON:0003082 | denotes | mastoids |
| T99632 | 1613-1621 | SP_7 | denotes | COVID-19 |
| T16704 | 1789-1793 | UBERON:0001456 | denotes | face |
| T66647 | 1809-1813 | UBERON:0000004 | denotes | nose |
| T36938 | 1814-1817 | UBERON:0001711 | denotes | lid |
| T77173 | 1871-1880 | UBERON:0001852 | denotes | endonasal |
| T59130 | 1896-1901 | UBERON:0003129 | denotes | skull |
| T95842 | 1902-1906 | UBERON:0001678 | denotes | base |
| T91552 | 1941-1949 | SP_7 | denotes | COVID-19 |
| T69897 | 1990-1994 | UBERON:0001456 | denotes | face |
| T55802 | 2212-2216 | UBERON:0001456 | denotes | face |
| T92935 | 2252-2257 | NCBITaxon:10239 | denotes | virus |
| T9251 | 2291-2295 | UBERON:0000004 | denotes | nose |
| T75766 | 2296-2299 | UBERON:0001711 | denotes | lid |
| T54268 | 2664-2671 | UBERON:0002109 | denotes | nostril |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32779028-32220177-481900 | 268-270 | 32220177 | denotes | 18 |
| 32779028-32296469-481901 | 404-406 | 32296469 | denotes | 16 |
| 32779028-32353793-481902 | 1482-1483 | 32353793 | denotes | 7 |