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PMC:7417198 / 4752-6696 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T21 211-220 Body_part denotes pituitary http://purl.org/sig/ont/fma/fma13889
T22 221-226 Body_part denotes skull http://purl.org/sig/ont/fma/fma46565
T23 425-428 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T24 1098-1102 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T25 1332-1338 Body_part denotes mucosa http://purl.org/sig/ont/fma/fma85355
T26 1659-1668 Body_part denotes pituitary http://purl.org/sig/ont/fma/fma13889
T27 1704-1719 Body_part denotes cavernous sinus http://purl.org/sig/ont/fma/fma50772
T28 1735-1744 Body_part denotes pituitary http://purl.org/sig/ont/fma/fma13889
T29 1770-1776 Body_part denotes chiasm http://purl.org/sig/ont/fma/fma9649

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T14 221-226 Body_part denotes skull http://purl.obolibrary.org/obo/UBERON_0003129
T15 1098-1102 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T16 1332-1338 Body_part denotes mucosa http://purl.obolibrary.org/obo/UBERON_0000344
T17 1704-1719 Body_part denotes cavernous sinus http://purl.obolibrary.org/obo/UBERON_0003712

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 58-66 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 211-220 Disease denotes pituitary http://purl.obolibrary.org/obo/MONDO_0021156
T20 352-358 Disease denotes tumors http://purl.obolibrary.org/obo/MONDO_0005070
T21 457-470 Disease denotes hydrocephalus http://purl.obolibrary.org/obo/MONDO_0001150
T22 478-503 Disease denotes intracranial hypertension http://purl.obolibrary.org/obo/MONDO_0006810
T23 491-503 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T24 614-622 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 854-862 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 918-926 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 1482-1490 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 1659-1677 Disease denotes pituitary apoplexy http://purl.obolibrary.org/obo/MONDO_0006908
T29 1659-1668 Disease denotes pituitary http://purl.obolibrary.org/obo/MONDO_0021156
T30 1681-1695 Disease denotes chondrosarcoma http://purl.obolibrary.org/obo/MONDO_0008977
T31 1735-1744 Disease denotes pituitary http://purl.obolibrary.org/obo/MONDO_0021156
T32 1806-1814 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T37 97-100 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T38 209-210 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 984-989 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T40 1120-1121 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 1332-1338 http://purl.obolibrary.org/obo/UBERON_0000344 denotes mucosa
T42 1540-1542 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T43 1657-1658 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 1679-1680 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 1733-1734 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 227-231 Chemical denotes base http://purl.obolibrary.org/obo/CHEBI_22695
T4 1348-1351 Chemical denotes oro http://purl.obolibrary.org/obo/CHEBI_29287

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
51 0-7 Species denotes Patient Tax:9606
53 330-350 Disease denotes neurological defects MESH:D009421
57 352-358 Disease denotes tumors MESH:D009369
58 457-470 Disease denotes hydrocephalus MESH:D006849
59 491-503 Disease denotes hypertension MESH:D006973
61 58-66 Disease denotes COVID-19 MESH:C000657245
65 525-533 Species denotes patients Tax:9606
66 780-788 Species denotes patients Tax:9606
67 614-622 Disease denotes COVID-19 MESH:C000657245
70 854-862 Disease denotes COVID-19 MESH:C000657245
71 918-926 Disease denotes COVID-19 MESH:C000657245
76 1192-1199 Species denotes patient Tax:9606
77 1500-1508 Species denotes patients Tax:9606
78 1200-1208 Disease denotes Covid-19 MESH:C000657245
79 1482-1490 Disease denotes COVID-19 MESH:C000657245
85 1586-1594 Species denotes patients Tax:9606
86 1681-1695 Disease denotes chondrosarcoma MESH:D002813
87 1714-1728 Disease denotes sinus syndrome MESH:D012852
88 1735-1757 Disease denotes pituitary macroadenoma MESH:D010900
89 1806-1814 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 425-440 http://purl.obolibrary.org/obo/GO_0090660 denotes CSF circulation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T29 0-17 Sentence denotes Patient selection
T30 18-180 Sentence denotes Our department, according to the actual COVID-19 protocol national guidelines, has suspended elective procedures and reviewed our criteria of prioritization [21].
T31 181-351 Sentence denotes Accordingly, we retain that a pituitary/skull base procedure can be considered non-deferrable upon the presence ofpituitary apoplexy associated with neurological defects;
T32 352-510 Sentence denotes tumors with massive suprasellar and/or supradiaphragmatic component with CSF circulation obstacle and/or hydrocephalus and/or intracranial hypertension signs;
T33 511-591 Sentence denotes At admission, patients are screened via interview and temperature is registered.
T34 592-802 Sentence denotes Upon any suspicion of COVID-19, the infectivologist will be consulted in order to rule out the workflow; in any case, whether delaying surgery increases risks, precautions as for positive patients are required.
T35 803-1026 Sentence denotes However, it should be minded that the certainty of COVID-19 negativity status is somehow difficult to assess: many COVID-19 cases are asymptomatic, and the reliability of screening tests is often limited and eventually low.
T36 1027-1548 Sentence denotes As general rule though, basic precautions, i.e., accurate and frequent hand washing, wearing a surgical mask and social distancing should be taken regardless of the patient Covid-19 status [10]; further peculiar precautions should be adopted in addition during critic procedures involving the respiratory mucosa, such as oro-tracheal aspiration, intubation, extubation, and/or when performing transnasal, transoral surgery, being essential to distinguish COVID-19-positive patients from the negative ones [6, 10, 11, 19].
T37 1549-1789 Sentence denotes Hence, in the last month, only three patients required urgent treatment, respectively, for the treatment of a pituitary apoplexy, a chondrosarcoma causing cavernous sinus syndrome and a pituitary macroadenoma determining chiasm compression.
T38 1790-1944 Sentence denotes Once we cleared COVID-19 status (telephone interview and serological exam were run), we decided to adopt endoscopic endonasal approach in all these cases.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 457-470 Phenotype denotes hydrocephalus http://purl.obolibrary.org/obo/HP_0000238
T4 478-503 Phenotype denotes intracranial hypertension http://purl.obolibrary.org/obo/HP_0002516
T5 1361-1371 Phenotype denotes aspiration http://purl.obolibrary.org/obo/HP_0002835
T6 1681-1695 Phenotype denotes chondrosarcoma http://purl.obolibrary.org/obo/HP_0006765

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T54 58-66 SP_7 denotes COVID-19
T55 211-220 UBERON:0000007 denotes pituitary
T56 221-226 UBERON:0003129 denotes skull
T57 227-231 UBERON:0014626 denotes base
T58 330-342 UBERON:0001016 denotes neurological
T59 372-383 UBERON:0010402 denotes suprasellar
T60 391-409 UBERON:0010402 denotes supradiaphragmatic
T61 478-490 UBERON:0000970 denotes intracranial
T67 614-622 SP_7 denotes COVID-19
T68 854-862 SP_7 denotes COVID-19
T69 918-926 SP_7 denotes COVID-19
T70 1098-1102 UBERON:0002398 denotes hand
T71 1200-1208 SP_7 denotes Covid-19
T72 1320-1331 UBERON:0001004 denotes respiratory
T73 1332-1338 UBERON:0000344 denotes mucosa
T74 1352-1360 UBERON:0003126 denotes tracheal
T75 1482-1490 SP_7 denotes COVID-19
T76 1659-1668 UBERON:0000007 denotes pituitary
T77 1704-1719 UBERON:0003712 denotes cavernous sinus
T78 1735-1744 UBERON:0000007 denotes pituitary
T79 1770-1776 GO:0005712 denotes chiasm
T80 1806-1814 SP_7 denotes COVID-19
T97707 58-66 SP_7 denotes COVID-19
T48807 211-220 UBERON:0000007 denotes pituitary
T83331 221-226 UBERON:0003129 denotes skull
T67545 227-231 UBERON:0014626 denotes base
T49848 330-342 UBERON:0001016 denotes neurological
T31721 372-383 UBERON:0010402 denotes suprasellar
T95114 391-409 UBERON:0010402 denotes supradiaphragmatic
T26165 478-490 UBERON:0000970 denotes intracranial
T86680 614-622 SP_7 denotes COVID-19
T62815 854-862 SP_7 denotes COVID-19
T99852 918-926 SP_7 denotes COVID-19
T83316 1098-1102 UBERON:0002398 denotes hand
T84061 1200-1208 SP_7 denotes Covid-19
T66241 1320-1331 UBERON:0001004 denotes respiratory
T76192 1332-1338 UBERON:0000344 denotes mucosa
T19895 1352-1360 UBERON:0003126 denotes tracheal
T45940 1482-1490 SP_7 denotes COVID-19
T7273 1659-1668 UBERON:0000007 denotes pituitary
T23703 1704-1719 UBERON:0003712 denotes cavernous sinus
T8756 1735-1744 UBERON:0000007 denotes pituitary
T26945 1770-1776 GO:0005712 denotes chiasm
T77799 1806-1814 SP_7 denotes COVID-19