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PMC:7417187 / 1523-2934 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 38-49 Body_part denotes spinal cord http://purl.org/sig/ont/fma/fma7647
T5 399-404 Body_part denotes spine http://purl.org/sig/ont/fma/fma13478
T6 800-819 Body_part denotes intervertebral disc http://purl.org/sig/ont/fma/fma10446
T7 828-840 Body_part denotes cauda equina http://purl.org/sig/ont/fma/fma52590
T8 1229-1235 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 38-49 Body_part denotes spinal cord http://purl.obolibrary.org/obo/UBERON_0002240
T4 70-79 Body_part denotes vertebral http://purl.obolibrary.org/obo/UBERON_3010224
T5 828-840 Body_part denotes cauda equina http://purl.obolibrary.org/obo/UBERON_0012337
T6 1229-1235 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T9 38-56 Disease denotes spinal cord injury http://purl.obolibrary.org/obo/MONDO_0043797
T10 50-56 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T11 58-61 Disease denotes SCI http://purl.obolibrary.org/obo/MONDO_0043797
T12 80-88 Disease denotes fracture http://purl.obolibrary.org/obo/MONDO_0005315
T13 168-171 Disease denotes SCI http://purl.obolibrary.org/obo/MONDO_0043797
T14 379-391 Disease denotes tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T15 828-849 Disease denotes cauda equina syndrome http://purl.obolibrary.org/obo/MONDO_0005693
T16 910-918 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 919-966 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T18 919-952 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T19 968-976 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 968-972 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 1204-1212 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 1213-1222 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 1224-1235 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T24 1347-1355 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 1402-1410 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T13 38-49 http://purl.obolibrary.org/obo/UBERON_0002240 denotes spinal cord
T14 70-79 http://purl.obolibrary.org/obo/NCBITaxon_7742 denotes vertebral
T15 221-230 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T16 249-261 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumented
T17 274-281 http://www.ebi.ac.uk/efo/EFO_0000967 denotes pedicle
T18 441-450 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T19 502-509 http://www.ebi.ac.uk/efo/EFO_0000967 denotes pedicle
T20 594-598 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T21 683-684 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 1037-1045 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test was
T23 1356-1360 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 567-579 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T2 575-579 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T3 1266-1272 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
50 6-14 Species denotes patients Tax:9606
51 172-180 Species denotes patients Tax:9606
52 299-307 Species denotes patients Tax:9606
53 359-367 Species denotes patients Tax:9606
54 667-675 Species denotes patients Tax:9606
55 894-901 Species denotes patient Tax:9606
56 919-966 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
57 968-978 Species denotes SARS-CoV-2 Tax:2697049
58 1064-1072 Species denotes patients Tax:9606
59 1129-1137 Species denotes patients Tax:9606
60 1152-1160 Species denotes patients Tax:9606
61 1310-1317 Species denotes patient Tax:9606
62 1366-1374 Species denotes patients Tax:9606
63 1266-1272 Chemical denotes oxygen MESH:D010100
64 38-56 Disease denotes spinal cord injury MESH:D013119
65 70-88 Disease denotes vertebral fracture MESH:D050723
66 158-171 Disease denotes traumatic SCI MESH:D014947
67 379-391 Disease denotes tuberculosis MESH:D014376
68 828-849 Disease denotes cauda equina syndrome MESH:D011128
69 910-918 Disease denotes COVID-19 MESH:C000657245
70 1118-1123 Disease denotes fever MESH:D005334
71 1204-1212 Disease denotes COVID-19 MESH:C000657245
72 1213-1222 Disease denotes infection MESH:D007239
73 1243-1250 Disease denotes fatigue MESH:D005221
74 1347-1355 Disease denotes COVID-19 MESH:C000657245
75 1402-1410 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 980-1001 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 988-1001 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-147 Sentence denotes Eight patients (61.5%) presented with spinal cord injury (SCI) due to vertebral fracture with fall from height (87.5%) as the most common etiology.
T16 148-789 Sentence denotes Among the traumatic SCI patients, six (75%) were managed surgically with posterior decompression and instrumented fusion with pedicle screws while two patients (25%) were managed conservatively. There were four patients (30.8%) of tuberculosis of the spine of whom two (50%) were managed with posterior decompression, debridement, and stabilization with pedicle screws, samples for culture, biopsy, and cartridge-based nucleic acid amplification test (CBNAAT) were collected during the procedure; for the remaining two patients (50%), a trans-pedicular biopsy was performed to confirm the diagnosis for initiation of anti-tubercular therapy.
T17 790-1145 Sentence denotes Prolapsed intervertebral disc causing cauda equina syndrome was the reason for emergency surgery in one patient (7.7%). COVID-19 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) reverse transcription-polymerase chain reaction (RT-PCR) test was performed in four patients (30.8%), in whom the most common symptom was fever (two patients (50%)).
T18 1146-1223 Sentence denotes These patients were residents of high prevalence area for COVID-19 infection.
T19 1224-1361 Sentence denotes Sore throat (25%), fatigue (25%), and low oxygen saturation (25%) were present in one patient which prompted us to get the COVID-19 test.
T20 1362-1411 Sentence denotes All patients were reported negative for COVID-19.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 1118-1123 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 1224-1235 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T4 1243-1250 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T13 38-49 UBERON:0002240 denotes spinal cord
T14 70-79 UBERON:3010224 denotes vertebral
T15 399-404 UBERON:0001130 denotes spine
T16 502-509 GO:0044316 denotes pedicle
T17 567-574 GO:0005634 denotes nucleic
T18 800-819 UBERON:0001066 denotes intervertebral disc
T19 828-840 UBERON:0012337 denotes cauda equina
T20 910-931 SP_7 denotes COVID-19 severe acute
T21 932-943 SP_7;UBERON:0001004 denotes respiratory
T22 944-966 SP_7 denotes syndrome coronavirus 2
T23 968-978 SP_7 denotes SARS-CoV-2
T24 980-1001 GO:0001171 denotes reverse transcription
T25 1204-1212 SP_7 denotes COVID-19
T26 1229-1235 UBERON:0000341 denotes throat
T27 1347-1355 SP_7 denotes COVID-19
T28 1402-1410 SP_7 denotes COVID-19
T77946 38-49 UBERON:0002240 denotes spinal cord
T17271 70-79 UBERON:3010224 denotes vertebral
T4956 399-404 UBERON:0001130 denotes spine
T36779 502-509 GO:0044316 denotes pedicle
T6462 567-574 GO:0005634 denotes nucleic
T9747 800-819 UBERON:0001066 denotes intervertebral disc
T27195 828-840 UBERON:0012337 denotes cauda equina
T49973 910-931 SP_7 denotes COVID-19 severe acute
T17956 932-943 SP_7;UBERON:0001004 denotes respiratory
T3893 944-966 SP_7 denotes syndrome coronavirus 2
T49191 968-978 SP_7 denotes SARS-CoV-2
T38068 980-1001 GO:0001171 denotes reverse transcription
T82611 1204-1212 SP_7 denotes COVID-19
T82501 1229-1235 UBERON:0000341 denotes throat
T64774 1347-1355 SP_7 denotes COVID-19
T57355 1402-1410 SP_7 denotes COVID-19