PMC:7417114 / 23944-30357
Annnotations
LitCovid-PD-FMA-UBERON
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2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
LitCovid-PD-UBERON
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FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
LitCovid-PD-MONDO
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2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T277","span":{"begin":253,"end":261},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T278","span":{"begin":298,"end":306},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T279","span":{"begin":392,"end":396},"obj":"http://purl.obolibrary.org/obo/PR_000002001"},{"id":"T280","span":{"begin":465,"end":467},"obj":"http://purl.obolibrary.org/obo/CLO_0001382"},{"id":"T281","span":{"begin":592,"end":596},"obj":"http://purl.obolibrary.org/obo/PR_000002001"},{"id":"T282","span":{"begin":638,"end":641},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T283","span":{"begin":778,"end":782},"obj":"http://purl.obolibrary.org/obo/PR_000002001"},{"id":"T284","span":{"begin":803,"end":805},"obj":"http://purl.obolibrary.org/obo/CLO_0053794"},{"id":"T285","span":{"begin":922,"end":925},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T286","span":{"begin":933,"end":937},"obj":"http://purl.obolibrary.org/obo/CLO_0053407"},{"id":"T287","span":{"begin":949,"end":952},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T288","span":{"begin":964,"end":967},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T289","span":{"begin":1039,"end":1042},"obj":"http://purl.obolibrary.org/obo/CLO_0054060"},{"id":"T290","span":{"begin":1359,"end":1363},"obj":"http://purl.obolibrary.org/obo/CLO_0053407"},{"id":"T291","span":{"begin":1461,"end":1463},"obj":"http://purl.obolibrary.org/obo/CLO_0001527"},{"id":"T292","span":{"begin":1547,"end":1551},"obj":"http://purl.obolibrary.org/obo/CLO_0053407"},{"id":"T293","span":{"begin":1702,"end":1706},"obj":"http://purl.obolibrary.org/obo/CLO_0053407"},{"id":"T294","span":{"begin":1718,"end":1721},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T295","span":{"begin":1817,"end":1820},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T296","span":{"begin":1852,"end":1855},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T297","span":{"begin":2038,"end":2041},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T298","span":{"begin":2049,"end":2053},"obj":"http://purl.obolibrary.org/obo/CLO_0053407"},{"id":"T299","span":{"begin":2076,"end":2079},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T300","span":{"begin":2086,"end":2089},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T301","span":{"begin":2264,"end":2267},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T302","span":{"begin":2278,"end":2282},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T303","span":{"begin":2431,"end":2434},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T304","span":{"begin":2480,"end":2483},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T305","span":{"begin":2494,"end":2498},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T306","span":{"begin":2641,"end":2644},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T307","span":{"begin":2652,"end":2655},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T308","span":{"begin":2674,"end":2677},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T309","span":{"begin":2684,"end":2688},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T310","span":{"begin":2931,"end":2939},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T311","span":{"begin":3042,"end":3046},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T312","span":{"begin":3047,"end":3051},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T313","span":{"begin":3047,"end":3051},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T314","span":{"begin":3072,"end":3075},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T315","span":{"begin":3096,"end":3099},"obj":"http://purl.obolibrary.org/obo/CLO_0001046"},{"id":"T316","span":{"begin":3144,"end":3148},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T317","span":{"begin":3149,"end":3153},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T318","span":{"begin":3149,"end":3153},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T319","span":{"begin":3180,"end":3184},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T320","span":{"begin":3213,"end":3216},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T321","span":{"begin":3250,"end":3253},"obj":"http://purl.obolibrary.org/obo/CLO_0001046"},{"id":"T322","span":{"begin":3298,"end":3304},"obj":"http://purl.obolibrary.org/obo/UBERON_0000310"},{"id":"T323","span":{"begin":3349,"end":3352},"obj":"http://purl.obolibrary.org/obo/CLO_0001046"},{"id":"T324","span":{"begin":3395,"end":3399},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T325","span":{"begin":3400,"end":3404},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T326","span":{"begin":3400,"end":3404},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T327","span":{"begin":3439,"end":3445},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T328","span":{"begin":3538,"end":3541},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T329","span":{"begin":3589,"end":3593},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T330","span":{"begin":3594,"end":3598},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T331","span":{"begin":3594,"end":3598},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T332","span":{"begin":3644,"end":3647},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T333","span":{"begin":3665,"end":3667},"obj":"http://purl.obolibrary.org/obo/CLO_0001382"},{"id":"T334","span":{"begin":3683,"end":3686},"obj":"http://purl.obolibrary.org/obo/CLO_0001046"},{"id":"T335","span":{"begin":3715,"end":3721},"obj":"http://purl.obolibrary.org/obo/UBERON_0000310"},{"id":"T336","span":{"begin":3774,"end":3778},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T337","span":{"begin":3942,"end":3946},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T338","span":{"begin":4108,"end":4112},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T339","span":{"begin":4197,"end":4200},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T340","span":{"begin":4324,"end":4328},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T341","span":{"begin":4384,"end":4388},"obj":"http://purl.obolibrary.org/obo/CLO_0053407"},{"id":"T342","span":{"begin":4513,"end":4517},"obj":"http://purl.obolibrary.org/obo/CLO_0053407"},{"id":"T343","span":{"begin":4525,"end":4528},"obj":"http://purl.obolibrary.org/obo/CLO_0037126"},{"id":"T344","span":{"begin":4535,"end":4538},"obj":"http://purl.obolibrary.org/obo/CLO_0009132"},{"id":"T345","span":{"begin":4556,"end":4558},"obj":"http://purl.obolibrary.org/obo/CLO_0001382"},{"id":"T346","span":{"begin":4730,"end":4734},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T347","span":{"begin":4892,"end":4895},"obj":"http://purl.obolibrary.org/obo/CLO_0054061"},{"id":"T348","span":{"begin":4898,"end":4901},"obj":"http://purl.obolibrary.org/obo/CLO_0054061"},{"id":"T349","span":{"begin":4926,"end":4932},"obj":"http://purl.obolibrary.org/obo/UBERON_0000310"},{"id":"T350","span":{"begin":4996,"end":5002},"obj":"http://purl.obolibrary.org/obo/UBERON_0000310"},{"id":"T351","span":{"begin":5144,"end":5153},"obj":"http://purl.obolibrary.org/obo/SO_0000418"},{"id":"T352","span":{"begin":5165,"end":5175},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T353","span":{"begin":5321,"end":5325},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T354","span":{"begin":5326,"end":5330},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T355","span":{"begin":5326,"end":5330},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T356","span":{"begin":5344,"end":5349},"obj":"http://purl.obolibrary.org/obo/CLO_0053698"},{"id":"T357","span":{"begin":5351,"end":5355},"obj":"http://purl.obolibrary.org/obo/PR_000009064"},{"id":"T358","span":{"begin":5397,"end":5401},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T359","span":{"begin":5402,"end":5406},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T360","span":{"begin":5402,"end":5406},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T361","span":{"begin":5522,"end":5525},"obj":"http://purl.obolibrary.org/obo/CLO_0002994"},{"id":"T362","span":{"begin":5522,"end":5525},"obj":"http://purl.obolibrary.org/obo/CLO_0002995"},{"id":"T363","span":{"begin":5527,"end":5532},"obj":"http://purl.obolibrary.org/obo/CLO_0053471"},{"id":"T364","span":{"begin":5639,"end":5643},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T365","span":{"begin":5644,"end":5648},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T366","span":{"begin":5644,"end":5648},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T367","span":{"begin":6072,"end":6073},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T368","span":{"begin":6090,"end":6097},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T369","span":{"begin":6179,"end":6187},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T370","span":{"begin":6228,"end":6236},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"}],"text":"Table 2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
LitCovid-PD-CHEBI
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2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
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2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
LitCovid-PD-HP
{"project":"LitCovid-PD-HP","denotations":[{"id":"T29","span":{"begin":329,"end":351},"obj":"Phenotype"},{"id":"T30","span":{"begin":362,"end":374},"obj":"Phenotype"},{"id":"T31","span":{"begin":552,"end":574},"obj":"Phenotype"},{"id":"T32","span":{"begin":754,"end":776},"obj":"Phenotype"},{"id":"T33","span":{"begin":838,"end":862},"obj":"Phenotype"},{"id":"T34","span":{"begin":867,"end":895},"obj":"Phenotype"},{"id":"T35","span":{"begin":1121,"end":1145},"obj":"Phenotype"},{"id":"T36","span":{"begin":1150,"end":1178},"obj":"Phenotype"},{"id":"T37","span":{"begin":1180,"end":1210},"obj":"Phenotype"},{"id":"T38","span":{"begin":1233,"end":1241},"obj":"Phenotype"},{"id":"T39","span":{"begin":1280,"end":1292},"obj":"Phenotype"},{"id":"T40","span":{"begin":1294,"end":1318},"obj":"Phenotype"},{"id":"T41","span":{"begin":1506,"end":1530},"obj":"Phenotype"},{"id":"T42","span":{"begin":1627,"end":1651},"obj":"Phenotype"},{"id":"T43","span":{"begin":1657,"end":1685},"obj":"Phenotype"},{"id":"T44","span":{"begin":1792,"end":1810},"obj":"Phenotype"},{"id":"T45","span":{"begin":2007,"end":2031},"obj":"Phenotype"},{"id":"T46","span":{"begin":2193,"end":2213},"obj":"Phenotype"},{"id":"T47","span":{"begin":2385,"end":2398},"obj":"Phenotype"},{"id":"T48","span":{"begin":2400,"end":2412},"obj":"Phenotype"},{"id":"T49","span":{"begin":2603,"end":2616},"obj":"Phenotype"},{"id":"T50","span":{"begin":2790,"end":2808},"obj":"Phenotype"},{"id":"T51","span":{"begin":2810,"end":2830},"obj":"Phenotype"},{"id":"T52","span":{"begin":2842,"end":2851},"obj":"Phenotype"},{"id":"T53","span":{"begin":3032,"end":3058},"obj":"Phenotype"},{"id":"T54","span":{"begin":3134,"end":3160},"obj":"Phenotype"},{"id":"T55","span":{"begin":3171,"end":3194},"obj":"Phenotype"},{"id":"T56","span":{"begin":3298,"end":3311},"obj":"Phenotype"},{"id":"T57","span":{"begin":3385,"end":3411},"obj":"Phenotype"},{"id":"T58","span":{"begin":3579,"end":3605},"obj":"Phenotype"},{"id":"T59","span":{"begin":3607,"end":3624},"obj":"Phenotype"},{"id":"T60","span":{"begin":3715,"end":3728},"obj":"Phenotype"},{"id":"T61","span":{"begin":3768,"end":3788},"obj":"Phenotype"},{"id":"T62","span":{"begin":3799,"end":3818},"obj":"Phenotype"},{"id":"T63","span":{"begin":3936,"end":3956},"obj":"Phenotype"},{"id":"T64","span":{"begin":3958,"end":3982},"obj":"Phenotype"},{"id":"T65","span":{"begin":3992,"end":3998},"obj":"Phenotype"},{"id":"T66","span":{"begin":4102,"end":4122},"obj":"Phenotype"},{"id":"T67","span":{"begin":4124,"end":4154},"obj":"Phenotype"},{"id":"T68","span":{"begin":4318,"end":4338},"obj":"Phenotype"},{"id":"T69","span":{"begin":4466,"end":4493},"obj":"Phenotype"},{"id":"T70","span":{"begin":4595,"end":4601},"obj":"Phenotype"},{"id":"T71","span":{"begin":4603,"end":4633},"obj":"Phenotype"},{"id":"T72","span":{"begin":4650,"end":4656},"obj":"Phenotype"},{"id":"T73","span":{"begin":4735,"end":4743},"obj":"Phenotype"},{"id":"T74","span":{"begin":4745,"end":4774},"obj":"Phenotype"},{"id":"T75","span":{"begin":4776,"end":4804},"obj":"Phenotype"},{"id":"T76","span":{"begin":4824,"end":4832},"obj":"Phenotype"},{"id":"T77","span":{"begin":4848,"end":4856},"obj":"Phenotype"},{"id":"T78","span":{"begin":4926,"end":4939},"obj":"Phenotype"},{"id":"T79","span":{"begin":4996,"end":5009},"obj":"Phenotype"},{"id":"T80","span":{"begin":5213,"end":5235},"obj":"Phenotype"},{"id":"T81","span":{"begin":5311,"end":5337},"obj":"Phenotype"},{"id":"T82","span":{"begin":5387,"end":5413},"obj":"Phenotype"},{"id":"T83","span":{"begin":5486,"end":5515},"obj":"Phenotype"},{"id":"T84","span":{"begin":5609,"end":5627},"obj":"Phenotype"},{"id":"T85","span":{"begin":5629,"end":5655},"obj":"Phenotype"}],"attributes":[{"id":"A29","pred":"hp_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/HP_0004808"},{"id":"A30","pred":"hp_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/HP_0100495"},{"id":"A31","pred":"hp_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/HP_0004808"},{"id":"A32","pred":"hp_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/HP_0004808"},{"id":"A33","pred":"hp_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/HP_0005506"},{"id":"A34","pred":"hp_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/HP_0006721"},{"id":"A35","pred":"hp_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/HP_0005506"},{"id":"A36","pred":"hp_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/HP_0006721"},{"id":"A37","pred":"hp_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/HP_0100723"},{"id":"A38","pred":"hp_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/HP_0001909"},{"id":"A39","pred":"hp_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/HP_0100495"},{"id":"A40","pred":"hp_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/HP_0002863"},{"id":"A41","pred":"hp_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/HP_0005506"},{"id":"A42","pred":"hp_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/HP_0005506"},{"id":"A43","pred":"hp_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/HP_0006721"},{"id":"A44","pred":"hp_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/HP_0002206"},{"id":"A45","pred":"hp_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/HP_0005506"},{"id":"A46","pred":"hp_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/HP_0001370"},{"id":"A47","pred":"hp_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/HP_0011974"},{"id":"A48","pred":"hp_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/HP_0001901"},{"id":"A49","pred":"hp_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/HP_0011974"},{"id":"A50","pred":"hp_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/HP_0100279"},{"id":"A51","pred":"hp_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/HP_0001370"},{"id":"A52","pred":"hp_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/HP_0001369"},{"id":"A53","pred":"hp_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/HP_0030358"},{"id":"A54","pred":"hp_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/HP_0030358"},{"id":"A55","pred":"hp_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/HP_0002860"},{"id":"A56","pred":"hp_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/HP_0003002"},{"id":"A57","pred":"hp_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/HP_0030358"},{"id":"A58","pred":"hp_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/HP_0030358"},{"id":"A59","pred":"hp_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/HP_0002894"},{"id":"A60","pred":"hp_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/HP_0003002"},{"id":"A61","pred":"hp_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/HP_0005584"},{"id":"A62","pred":"hp_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/HP_0030448"},{"id":"A63","pred":"hp_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/HP_0005584"},{"id":"A64","pred":"hp_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/HP_0001402"},{"id":"A65","pred":"hp_id","subj":"T65","obj":"http://purl.obolibrary.org/obo/HP_0002664"},{"id":"A66","pred":"hp_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/HP_0005584"},{"id":"A67","pred":"hp_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/HP_0100723"},{"id":"A68","pred":"hp_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/HP_0005584"},{"id":"A69","pred":"hp_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/HP_0002865"},{"id":"A70","pred":"hp_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/HP_0002664"},{"id":"A71","pred":"hp_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/HP_0100723"},{"id":"A72","pred":"hp_id","subj":"T72","obj":"http://purl.obolibrary.org/obo/HP_0002664"},{"id":"A73","pred":"hp_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/HP_0002665"},{"id":"A74","pred":"hp_id","subj":"T74","obj":"http://purl.obolibrary.org/obo/HP_0005508"},{"id":"A75","pred":"hp_id","subj":"T75","obj":"http://purl.obolibrary.org/obo/HP_0005550"},{"id":"A76","pred":"hp_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/HP_0002665"},{"id":"A77","pred":"hp_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/HP_0002665"},{"id":"A78","pred":"hp_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/HP_0003002"},{"id":"A79","pred":"hp_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/HP_0003002"},{"id":"A80","pred":"hp_id","subj":"T80","obj":"http://purl.obolibrary.org/obo/HP_0004808"},{"id":"A81","pred":"hp_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/HP_0030358"},{"id":"A82","pred":"hp_id","subj":"T82","obj":"http://purl.obolibrary.org/obo/HP_0030358"},{"id":"A83","pred":"hp_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/HP_0007354"},{"id":"A84","pred":"hp_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/HP_0002206"},{"id":"A85","pred":"hp_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/HP_0030358"}],"text":"Table 2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
LitCovid-PD-GO-BP
{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T72","span":{"begin":22,"end":39},"obj":"http://purl.obolibrary.org/obo/GO_0033673"},{"id":"T73","span":{"begin":81,"end":97},"obj":"http://purl.obolibrary.org/obo/GO_0033673"},{"id":"T74","span":{"begin":2065,"end":2069},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T75","span":{"begin":3060,"end":3064},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T76","span":{"begin":3066,"end":3070},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T77","span":{"begin":3201,"end":3205},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T78","span":{"begin":3207,"end":3211},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T79","span":{"begin":3324,"end":3328},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T80","span":{"begin":3330,"end":3334},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T81","span":{"begin":3413,"end":3417},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T82","span":{"begin":3419,"end":3423},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T83","span":{"begin":3500,"end":3519},"obj":"http://purl.obolibrary.org/obo/GO_0001816"},{"id":"T84","span":{"begin":3632,"end":3636},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T85","span":{"begin":3638,"end":3642},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T86","span":{"begin":3735,"end":3739},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T87","span":{"begin":3741,"end":3745},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T88","span":{"begin":3843,"end":3847},"obj":"http://purl.obolibrary.org/obo/GO_0005007"},{"id":"T89","span":{"begin":4495,"end":4499},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T90","span":{"begin":4519,"end":4523},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T91","span":{"begin":4863,"end":4867},"obj":"http://purl.obolibrary.org/obo/GO_0005006"},{"id":"T92","span":{"begin":5144,"end":5153},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T93","span":{"begin":5657,"end":5661},"obj":"http://purl.obolibrary.org/obo/GO_0005007"},{"id":"T94","span":{"begin":6004,"end":6021},"obj":"http://purl.obolibrary.org/obo/GO_0019079"},{"id":"T95","span":{"begin":6004,"end":6021},"obj":"http://purl.obolibrary.org/obo/GO_0019058"},{"id":"T96","span":{"begin":6244,"end":6261},"obj":"http://purl.obolibrary.org/obo/GO_0033673"}],"text":"Table 2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T139","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T140","span":{"begin":9,"end":40},"obj":"Sentence"},{"id":"T141","span":{"begin":41,"end":80},"obj":"Sentence"},{"id":"T142","span":{"begin":81,"end":306},"obj":"Sentence"},{"id":"T143","span":{"begin":307,"end":327},"obj":"Sentence"},{"id":"T144","span":{"begin":328,"end":432},"obj":"Sentence"},{"id":"T145","span":{"begin":433,"end":448},"obj":"Sentence"},{"id":"T146","span":{"begin":449,"end":463},"obj":"Sentence"},{"id":"T147","span":{"begin":464,"end":517},"obj":"Sentence"},{"id":"T148","span":{"begin":518,"end":530},"obj":"Sentence"},{"id":"T149","span":{"begin":531,"end":664},"obj":"Sentence"},{"id":"T150","span":{"begin":665,"end":729},"obj":"Sentence"},{"id":"T151","span":{"begin":730,"end":752},"obj":"Sentence"},{"id":"T152","span":{"begin":753,"end":777},"obj":"Sentence"},{"id":"T153","span":{"begin":778,"end":796},"obj":"Sentence"},{"id":"T154","span":{"begin":797,"end":809},"obj":"Sentence"},{"id":"T155","span":{"begin":810,"end":816},"obj":"Sentence"},{"id":"T156","span":{"begin":817,"end":836},"obj":"Sentence"},{"id":"T157","span":{"begin":837,"end":1061},"obj":"Sentence"},{"id":"T158","span":{"begin":1062,"end":1119},"obj":"Sentence"},{"id":"T159","span":{"begin":1120,"end":1484},"obj":"Sentence"},{"id":"T160","span":{"begin":1485,"end":1504},"obj":"Sentence"},{"id":"T161","span":{"begin":1505,"end":1605},"obj":"Sentence"},{"id":"T162","span":{"begin":1606,"end":1625},"obj":"Sentence"},{"id":"T163","span":{"begin":1626,"end":1747},"obj":"Sentence"},{"id":"T164","span":{"begin":1748,"end":1759},"obj":"Sentence"},{"id":"T165","span":{"begin":1760,"end":1841},"obj":"Sentence"},{"id":"T166","span":{"begin":1842,"end":1861},"obj":"Sentence"},{"id":"T167","span":{"begin":1862,"end":1985},"obj":"Sentence"},{"id":"T168","span":{"begin":1986,"end":2005},"obj":"Sentence"},{"id":"T169","span":{"begin":2006,"end":2168},"obj":"Sentence"},{"id":"T170","span":{"begin":2169,"end":2191},"obj":"Sentence"},{"id":"T171","span":{"begin":2192,"end":2243},"obj":"Sentence"},{"id":"T172","span":{"begin":2244,"end":2362},"obj":"Sentence"},{"id":"T173","span":{"begin":2363,"end":2383},"obj":"Sentence"},{"id":"T174","span":{"begin":2384,"end":2458},"obj":"Sentence"},{"id":"T175","span":{"begin":2459,"end":2580},"obj":"Sentence"},{"id":"T176","span":{"begin":2581,"end":2601},"obj":"Sentence"},{"id":"T177","span":{"begin":2602,"end":2655},"obj":"Sentence"},{"id":"T178","span":{"begin":2656,"end":2763},"obj":"Sentence"},{"id":"T179","span":{"begin":2764,"end":2788},"obj":"Sentence"},{"id":"T180","span":{"begin":2789,"end":2911},"obj":"Sentence"},{"id":"T181","span":{"begin":2912,"end":3011},"obj":"Sentence"},{"id":"T182","span":{"begin":3012,"end":3030},"obj":"Sentence"},{"id":"T183","span":{"begin":3031,"end":3112},"obj":"Sentence"},{"id":"T184","span":{"begin":3113,"end":3132},"obj":"Sentence"},{"id":"T185","span":{"begin":3133,"end":3266},"obj":"Sentence"},{"id":"T186","span":{"begin":3267,"end":3296},"obj":"Sentence"},{"id":"T187","span":{"begin":3297,"end":3359},"obj":"Sentence"},{"id":"T188","span":{"begin":3360,"end":3383},"obj":"Sentence"},{"id":"T189","span":{"begin":3384,"end":3423},"obj":"Sentence"},{"id":"T190","span":{"begin":3424,"end":3551},"obj":"Sentence"},{"id":"T191","span":{"begin":3552,"end":3557},"obj":"Sentence"},{"id":"T192","span":{"begin":3558,"end":3577},"obj":"Sentence"},{"id":"T193","span":{"begin":3578,"end":3647},"obj":"Sentence"},{"id":"T194","span":{"begin":3648,"end":3663},"obj":"Sentence"},{"id":"T195","span":{"begin":3664,"end":3693},"obj":"Sentence"},{"id":"T196","span":{"begin":3694,"end":3713},"obj":"Sentence"},{"id":"T197","span":{"begin":3714,"end":3745},"obj":"Sentence"},{"id":"T198","span":{"begin":3746,"end":3766},"obj":"Sentence"},{"id":"T199","span":{"begin":3767,"end":3908},"obj":"Sentence"},{"id":"T200","span":{"begin":3909,"end":3914},"obj":"Sentence"},{"id":"T201","span":{"begin":3915,"end":3934},"obj":"Sentence"},{"id":"T202","span":{"begin":3935,"end":4074},"obj":"Sentence"},{"id":"T203","span":{"begin":4075,"end":4100},"obj":"Sentence"},{"id":"T204","span":{"begin":4101,"end":4298},"obj":"Sentence"},{"id":"T205","span":{"begin":4299,"end":4316},"obj":"Sentence"},{"id":"T206","span":{"begin":4317,"end":4442},"obj":"Sentence"},{"id":"T207","span":{"begin":4443,"end":4464},"obj":"Sentence"},{"id":"T208","span":{"begin":4465,"end":4538},"obj":"Sentence"},{"id":"T209","span":{"begin":4539,"end":4559},"obj":"Sentence"},{"id":"T210","span":{"begin":4560,"end":4582},"obj":"Sentence"},{"id":"T211","span":{"begin":4583,"end":4699},"obj":"Sentence"},{"id":"T212","span":{"begin":4700,"end":4721},"obj":"Sentence"},{"id":"T213","span":{"begin":4722,"end":4902},"obj":"Sentence"},{"id":"T214","span":{"begin":4903,"end":4924},"obj":"Sentence"},{"id":"T215","span":{"begin":4925,"end":4957},"obj":"Sentence"},{"id":"T216","span":{"begin":4958,"end":4994},"obj":"Sentence"},{"id":"T217","span":{"begin":4995,"end":5026},"obj":"Sentence"},{"id":"T218","span":{"begin":5027,"end":5043},"obj":"Sentence"},{"id":"T219","span":{"begin":5044,"end":5048},"obj":"Sentence"},{"id":"T220","span":{"begin":5049,"end":5065},"obj":"Sentence"},{"id":"T221","span":{"begin":5066,"end":5175},"obj":"Sentence"},{"id":"T222","span":{"begin":5176,"end":5181},"obj":"Sentence"},{"id":"T223","span":{"begin":5182,"end":5191},"obj":"Sentence"},{"id":"T224","span":{"begin":5192,"end":5289},"obj":"Sentence"},{"id":"T225","span":{"begin":5290,"end":5309},"obj":"Sentence"},{"id":"T226","span":{"begin":5310,"end":5364},"obj":"Sentence"},{"id":"T227","span":{"begin":5365,"end":5385},"obj":"Sentence"},{"id":"T228","span":{"begin":5386,"end":5434},"obj":"Sentence"},{"id":"T229","span":{"begin":5435,"end":5454},"obj":"Sentence"},{"id":"T230","span":{"begin":5455,"end":5561},"obj":"Sentence"},{"id":"T231","span":{"begin":5562,"end":5565},"obj":"Sentence"},{"id":"T232","span":{"begin":5566,"end":5596},"obj":"Sentence"},{"id":"T233","span":{"begin":5597,"end":5792},"obj":"Sentence"},{"id":"T234","span":{"begin":5793,"end":5805},"obj":"Sentence"},{"id":"T235","span":{"begin":5806,"end":5870},"obj":"Sentence"},{"id":"T236","span":{"begin":5871,"end":5885},"obj":"Sentence"},{"id":"T237","span":{"begin":5886,"end":6146},"obj":"Sentence"},{"id":"T238","span":{"begin":6147,"end":6160},"obj":"Sentence"},{"id":"T239","span":{"begin":6161,"end":6262},"obj":"Sentence"},{"id":"T240","span":{"begin":6263,"end":6342},"obj":"Sentence"},{"id":"T241","span":{"begin":6343,"end":6413},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
2_test
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2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}
LitCovid-PMC-OGER-BB
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2. FDA approved kinase inhibitors: Kinase targets and respiratory benefits\nKinase Inhibitor (brand name)(indication; main therapeutic targets) Selected Kinase Target Affinity(antiviral and pulmonary benefit)KINOMEscan(kd\u003c100 nM) Anti-inflammatory activity, cytokine suppression, antifibrotic activity\nMidostaurin (Rydapt)\n(acute myeloid leukemia, systemic mastocytosis; multi-targeted; FLT3-ITD, D816V-c-KIT) AAK1, JAK2, JAK3,\nKd KIT (220nM),\nKd RET (350nM)\n(48) Anti-inflammatory and cytokine suppression (107)\nLestaurtinib\n(orphan drug status, acute myeloid leukemia; multi-targeted; FLT3, JAK2, TrkA, TrkB, TrkC) AAK1, AXL, FYN, GAK, JAK1, JAK2, JAK3, RET\nKd KIT (150nM)* Anti-inflammatory and cytokine suppression (107)\nGilteritinib (Xospata)\n(acute myeloid leukemia;\nFLT3-ITD; AXL) AXL\nIC50 (41 nM)\n(49)**\nDasatinib (Sprycel)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia; multi-targeted; BCR-ABL, SRC) ABL1, ABL2, CSK, FYN, GAK, KIT, LYN, SRC, YES Anti-inflammatory, cytokine suppression, antifibrotic (100) (99) (102) (103) (104) (101)\nImatinib Mesylate (Gleevec (US)/Glivec (Europe/Australia)\n(chronic myeloid leukemia, Ph+acute lymphoblastic leukemia, gastrointestinal stromal tumor, chronic eosinophilic leukemia, hypereosinophilic syndrome, systemic mastocytosis; myelodysplastic syndrome; BCR-ABL, KIT, FIP1L1-PDGFRalpha) ABL1, ABL2, KIT Anti-inflammatory, cytokine suppression/immunomodulatory, antifibrotic (91) (92) (90) (79) (94) (95) (96) (93) (77)\nNilotinib (Tasigna)\n(chronic myeloid leukemia; BCR-ABL) ABL1, ABL2, KIT Antifibrotic ((80) (81) (82) (83) (84) (85) (86)\nPonatinib (Iclusig)\n(chronic myeloid leukemia, Ph+ acute lymphoblastic leukemia; BCR-ABL) ABL1, ABL2, KIT, RET, SRC Cytokine suppression (78)\nSaracatinib\n(orphan drug status, idiopathic pulmonary fibrosis; ABL, SRC, LCK, FGR, BLK) ABL1\nFYN, LYN, SRC, YES1\nIC50 v-ABL (30 nM); IC50 FYN (10 nM); IC50 LYN (5 nM) (isolated protein kinase assay) (186)** Antifibrotic (100) (99) (105)\nBosutinib (Bosulif)\n(chronic myeloid leukemia; ABL, SRC) ABL1, ABL2, AXL, CSK, EGFR, FYN, GAK, LYN, SRC, YES Anti-inflammatory, cytokine suppression, and antifibrotic (104) (87) (88)\nBaricitinib (Olumiant)\n(rheumatoid arthritis; JAK1, JAK2) JAK1, JAK2, TYK2\nKd AAK1 (17 nM); Kd GAK (136 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression (106) (107) (108)\nRuxolitinib (Jakafi)\n(myelofibrosis, polycythemia vera; JAK1, JAK2) GAK, JAK1, JAK2, JAK3, TYK2\nKd AAK1 (100 nM); Kd GAK (120 nM) (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, antifibrotic (107)\nFedratinib (Inrebic)\n(myelofibrosis; JAK2) AAK1, ABL1, FYN, GAK, JAK2, SRC\nKd AAK1 32 nM; Kd GAK 1 nM (cell-free assay) (47)** Anti-inflammatory and cytokine suppression, (107) (115)\nTofacitinib (XELJANZ XR)\n(ulcerative colitis, rheumatoid arthritis, psoriatic arthritis, ankylosing spondylitis; JAK1, JAK3) JAK1, JAK2, JAK3, TYK2\nNo AAK1 inhibitory activity (47) Anti-inflammatory and cytokine suppression (109) (110) (107) (111)\nGefitinib (Iressa)\n(non-small cell lung cancer; EGFR) EGFR, GAK Antifibrotic (119) (116) (178) (118)\nAfatinib (Gilotrif)\n(non-small cell lung cancer, advanced squamous cell carcinoma; Her2/EGFR) EGFR, GAK Anti-inflammatory, antifibrotic (116) (178) (179)\nLapatinib (Tykerb and Tyverb)\n(breast cancer; Erb1/Erb2, EGFR) EGFR Antifibrotic (116) (178)\nOsimertinib (Tagrisso)’\n(non-small cell lung cancer; EGFR) EGFR\n(60)** AZ5104, active metabolite of osimertinib, downregulates Th17-related cytokine production via inhibition of SRC-ERK-STAT3\n(127)\nErlotinib (Tarceva)\n(non-small cell lung cancer, pancreatic cancer; Erb1, EGFR) EGFR, GAK\nKd ABL1 (310nM)\n(48) Antifibrotic (116) (178)\nNeratinib (Nerlynx)\n(breast cancer; Her2/EGFR) EGFR\nPazopanib (Votrient)\n(renal cell carcinoma, advanced soft tissue sarcoma; multi-targeted; c-KIT, FGFR, PDGFR, VEGFR) KIT Anti-inflammatory potential, antifibrotic\n(136)\nSorafenib (Nexavar)\n(renal cell carcinoma, hepatocellular carcinoma, thyroid cancer; multi-targeted; PDGFR, VEGFR, RAF) KIT, RET Antifibrotic (125) (126) (187)\nSunitinib malate (Sutent)\n(renal cell carcinoma, gastrointestinal stromal tumor; multi-targeted; PDGFR, VEGFR) AAK1, AXL, GAK, JAK1, KIT, RET Anti-inflammatory potential, cytokine suppression, antifibrotic (137) (135) (107)\nAxitinib (Inlyta)\n(renal cell carcinoma; c-KIT, PDGFR, VEGFR1, VEGFR2, VEGFR3) ABL1, ABL2, KIT Anti-inflammatory and cytokine suppression (128)\nVandetanib (Caprelsa)\n(medullary thyroid carcinoma; EGFR, RET, VEGFR) ABL2, EGFR, GAK, RET, SRC\nKd ABL1 (270nM) (48)\nRegorafenib (Stivarga)\n(colorectal cancer, gastrointestinal stromal tumor, hepatocellular cancer; PDGFRβ, Raf-1, TIE2, VEGFR1/2/3) KIT, RET\nIbrutinib (Imbruvica)\n(mantel cell lymphoma, Waldenstrom macroglobulinemia, chronic lymphocytic leukemia, Small lymphocytic lymphoma, marginal zone lymphoma; BTK) EGFR, RET Anti-inflammatory (132) (133)\nPalbociclib (Ibrance)\n(breast cancer; CDK4, CDK6) CDK6\nAbemaciclib (Verzenio and Verzenios)\n(breast cancer, CDK4,CDK6) CDK6\nIC50 (10 nmol/L)\nCDK9\nIC50 (57 nmol/L)\n(188)** Abemaciclib in combination with anastrozole led to increased cytokine signaling and immune activation\n(189)\nAlvocidib\n(orphan drug status, acute myeloid leukemia; CDK1, CDK2, CDK4, CDK9) CDK9 Anti-inflammatory (134)\nCeritinib (Zykadia)\n(non-small cell lung cancer; ALK, IGF1R, InsR, STK22D)\nCrizotinib (Xalkori)\n(non-small cell lung cancer; ALK/ROS1) ABL1, AXL\nMasitinib (Masivet)\n(orphan drug status, potential amyotrophic lateral sclerosis drug; FAK, FGFR3, KIT, LCK, PDGFR) ABL1, KIT,\nLYN\nNintedanib (Ofev and Vargatef)\n(idiopathic pulmonary fibrosis, non-small cell lung cancer; FGFR, PDGFR, VEGFR) AAK1, ABL1, AXL, JAK2, JAK3, KIT, RET, YES1 Anti-inflammatory, cytokine suppression, antifibrotic (129) (130) (131)\nLeft Column: Drug names and disease indication, and main therapeutic targets. Middle Column: Potency (based on KINOMEscan data) against key proteins associated with respiratory function and proteins involved in viral replication/life span/infection- believed to be necessary for a wide variety of viruses, including SARS-CoV and MERS-CoV and SARS-CoV-2. Right column: Anti-inflammatory activity, cytokine suppression, and antifibrotic activity of the kinase inhibitors.\n*These values were derived from ChEMBL database: https://www.ebi.ac.uk/chembl/.\n**These values were not derived from KINOMEscan; References are cited."}