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PMC:7408073 / 1001-3875 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T42134 805-816 Body_part denotes eosinophils http://purl.org/sig/ont/fma/fma62861
T20834 1061-1069 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T67033 1093-1097 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T79726 2372-2382 Body_part denotes eosinophil http://purl.org/sig/ont/fma/fma62861
T26227 2449-2459 Body_part denotes eosinophil http://purl.org/sig/ont/fma/fma62861
T2518 2794-2800 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 2794-2800 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
88 1093-1098 Gene denotes IL-1β Gene:3552
89 1100-1104 Gene denotes IL-6 Gene:3569
90 1106-1110 Gene denotes IL-8 Gene:3576
91 1112-1117 Gene denotes IL-10 Gene:3586
92 1122-1126 Gene denotes TNFα Gene:7124
93 10-57 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
94 59-69 Species denotes SARS-CoV-2 Tax:2697049
95 259-267 Species denotes patients Tax:9606
96 678-686 Species denotes patients Tax:9606
97 710-718 Species denotes patients Tax:9606
98 1393-1401 Species denotes patients Tax:9606
99 1451-1459 Species denotes patients Tax:9606
100 1816-1823 Species denotes patient Tax:9606
101 1856-1864 Species denotes patients Tax:9606
102 2312-2320 Species denotes patients Tax:9606
103 2605-2613 Species denotes patients Tax:9606
104 2809-2817 Species denotes patients Tax:9606
105 2865-2873 Species denotes patients Tax:9606
106 2322-2325 Gene denotes Th2 Gene:15111
107 306-312 Chemical denotes oxygen MESH:D010100
108 364-375 Chemical denotes chloroquine MESH:D002738
109 381-391 Chemical denotes macrolides MESH:D018942
110 71-80 Disease denotes infection MESH:D007239
111 101-109 Disease denotes COVID-19 MESH:C000657245
112 239-247 Disease denotes COVID-19 MESH:C000657245
113 248-257 Disease denotes infection MESH:D007239
114 425-445 Disease denotes SARS-CoV-2 infection MESH:C000657245
115 548-574 Disease denotes acute respiratory syndrome MESH:D012120
116 597-602 Disease denotes death MESH:D003643
117 727-756 Disease denotes lymphopaenia and eosinopaenia
118 834-846 Disease denotes eosinopaenia
119 947-973 Disease denotes cardiac dysfunction/injury MESH:D006331
120 975-1003 Disease denotes respiratory distress/illness MESH:D012140
121 1005-1045 Disease denotes coagulopathy, hypoproteinaemia, acidosis MESH:D000138
122 1047-1054 Disease denotes hypoxia MESH:D000860
123 1162-1174 Disease denotes hypertension MESH:D006973
124 1255-1269 Disease denotes severe disease MESH:D045169
125 1333-1339 Disease denotes asthma MESH:D001249
126 1384-1392 Disease denotes infected MESH:D007239
127 1442-1450 Disease denotes allergic MESH:D004342
128 1554-1560 Disease denotes asthma MESH:D001249
129 1622-1638 Disease denotes Viral infections MESH:D001102
130 1668-1684 Disease denotes allergic disease MESH:D004342
131 1995-2015 Disease denotes hypertensive disease MESH:D006973
132 2106-2121 Disease denotes virus infection MESH:D001102
133 2166-2178 Disease denotes hypertension MESH:D006973
134 2303-2311 Disease denotes infected MESH:D007239
135 2335-2352 Disease denotes allergic diseases MESH:D004342
136 2509-2521 Disease denotes hypertensive MESH:D006973
137 2583-2591 Disease denotes COVID-19 MESH:C000657245
138 2629-2650 Disease denotes chronic renal disease MESH:D051436
139 2786-2808 Disease denotes chronic kidney disease MESH:D051436
140 2842-2850 Disease denotes COVID-19 MESH:C000657245
141 2858-2864 Disease denotes asthma MESH:D001249

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 10-57 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T8 10-43 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T9 59-67 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 59-63 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 71-80 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 101-109 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 239-247 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 248-257 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 425-433 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 425-429 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 436-445 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 541-574 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T19 576-580 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 914-918 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 967-973 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T22 1005-1017 Disease denotes coagulopathy http://purl.obolibrary.org/obo/MONDO_0001531
T23 1037-1045 Disease denotes acidosis http://purl.obolibrary.org/obo/MONDO_0006022
T24 1162-1174 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T25 1333-1339 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T26 1442-1450 Disease denotes allergic http://purl.obolibrary.org/obo/MONDO_0004980
T27 1554-1560 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T28 1622-1638 Disease denotes Viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T29 1668-1684 Disease denotes allergic disease http://purl.obolibrary.org/obo/MONDO_0005271
T30 1668-1676 Disease denotes allergic http://purl.obolibrary.org/obo/MONDO_0004980
T31 1968-1972 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T32 1995-2015 Disease denotes hypertensive disease http://purl.obolibrary.org/obo/MONDO_0005044
T33 2106-2121 Disease denotes virus infection http://purl.obolibrary.org/obo/MONDO_0005108
T34 2112-2121 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 2166-2178 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T36 2335-2352 Disease denotes allergic diseases http://purl.obolibrary.org/obo/MONDO_0005271
T37 2335-2343 Disease denotes allergic http://purl.obolibrary.org/obo/MONDO_0004980
T38 2426-2430 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T39 2583-2591 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 2629-2650 Disease denotes chronic renal disease http://purl.obolibrary.org/obo/MONDO_0005300
T41 2637-2650 Disease denotes renal disease http://purl.obolibrary.org/obo/MONDO_0002118|http://purl.obolibrary.org/obo/MONDO_0005240
T43 2786-2808 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T44 2794-2808 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T46 2842-2850 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T47 2858-2864 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T92165 781-790 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T23402 854-855 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30677 1059-1060 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96031 1106-1110 http://purl.obolibrary.org/obo/CLO_0053704 denotes IL-8
T99826 1380-1383 http://purl.obolibrary.org/obo/CLO_0001414 denotes 548
T43843 1954-1959 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T60553 2078-2079 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56639 2106-2111 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28761 2208-2210 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T99781 2250-2252 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T70533 2400-2401 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72708 2794-2800 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T15863 2794-2800 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T37184 2794-2800 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T15 306-312 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T16 334-349 Chemical denotes glucocorticoids http://purl.obolibrary.org/obo/CHEBI_24261
T17 364-375 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T18 381-391 Chemical denotes macrolides http://purl.obolibrary.org/obo/CHEBI_25106
T19 877-886 Chemical denotes biomarker http://purl.obolibrary.org/obo/CHEBI_59163
T20 1093-1095 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T22 1100-1102 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T24 1106-1108 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T26 1112-1114 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T28 2036-2052 Chemical denotes antihypertensive http://purl.obolibrary.org/obo/CHEBI_35674

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T46890 624-629 http://purl.obolibrary.org/obo/GO_0007568 denotes Aging
T87124 1622-1638 http://purl.obolibrary.org/obo/GO_0016032 denotes Viral infections

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T9 0-177 Sentence denotes The novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection is the cause of the COVID-19 pandemic, for which there is currently no specific pharmacotherapy.
T10 178-420 Sentence denotes In the intensive care unit, depending on the severity of the COVID-19 infection, patients might receive supportive care such as oxygen supply, interferons, glucocorticoids, anti-virals, chloroquine, and macrolides given as deemed appropriate.
T11 421-623 Sentence denotes The SARS-CoV-2 infection produces either non-severe or severe symptoms and, in the latter case, it may precipitate into severe acute respiratory syndrome (SARS) and ultimately death [1,2,3,4,5,6,7,8,9].
T12 624-704 Sentence denotes Aging and different comorbidities are associated with patients’ critical status.
T13 705-891 Sentence denotes Most patients display lymphopaenia and eosinopaenia, and critical ones show extremely low levels of eosinophils, suggesting that eosinopaenia may be a potential diagnostic biomarker [1].
T14 892-1147 Sentence denotes Most serious cases of SARS are closely associated with cardiac dysfunction/injury, respiratory distress/illness, coagulopathy, hypoproteinaemia, acidosis, hypoxia and a cytokine storm mainly involving IL-1β, IL-6, IL-8, IL-10 and TNFα [1,2,3,4,5,6,7,8,9].
T15 1148-1621 Sentence denotes For instance, hypertension, an age-related disease, is the most common comorbidity (15–31% up to 24–58% in severe disease cases according to clinical reports), while only five cases of asthma (0.9%) were identified in one report of 548 infected patients in Wuhan [6], but no other asthmatic or allergic patients were described in other reports [1,2,3,4,5,7,8,9], considering that the overall prevalence of asthma is estimated to be 6.4% in Wuhan [6] and ~ 4% in China [10].
T16 1622-1787 Sentence denotes Viral infections usually increase the risk of allergic disease exacerbation [1]; however, the reported data seem to suggest that, in this case, the opposite is true.
T17 1788-2254 Sentence denotes Indeed, in more than 72.000 patient cohorts examined, the number of patients defined as asthmatic was low (5), which suggests that asthmatics might be protected from virus-induced SARS, whereas pre-existing hypertensive disease and/or pre-existing antihypertensive treatments may represent a risk factor for increased virus infection, considering that the overall prevalence of hypertension in Chinese adult population ≥18 years of age is estimated to be ~ 23% [11].
T18 2255-2557 Sentence denotes Therefore, according to the clinical picture of infected patients, Th2-mediated allergic diseases (usually with high eosinophil counts) may play a protective role against SARS (usually with low eosinophil counts), while yet unknown mechanisms related to hypertensive conditions may exacerbate symptoms.
T19 2558-2874 Sentence denotes To complete the picture, COVID-19 hospitalized patients suffering from chronic renal disease were usually low (0-3%) [1,2,3,4,5,6,7,8,9] if compared with the prevalence of the disease in China (10.2-11.3%) [12], suggesting that chronic kidney disease patients might be protected from COVID-19 as for asthma patients.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 975-995 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T3 1005-1017 Phenotype denotes coagulopathy http://purl.obolibrary.org/obo/HP_0003256
T4 1037-1045 Phenotype denotes acidosis http://purl.obolibrary.org/obo/HP_0001941
T5 1047-1054 Phenotype denotes hypoxia http://purl.obolibrary.org/obo/HP_0012418
T6 1061-1075 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T7 1162-1174 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T8 1333-1339 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T9 1554-1560 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T10 2166-2178 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T11 2786-2808 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T12 2858-2864 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099

2_test

Id Subject Object Predicate Lexical cue
32708755-32077115-20678617 604-605 32077115 denotes 1
32708755-32161940-20678618 606-607 32161940 denotes 2
32708755-32171076-20678619 608-609 32171076 denotes 3
32708755-32109013-20678620 612-613 32109013 denotes 5
32708755-32294485-20678621 614-615 32294485 denotes 6
32708755-32091533-20678622 616-617 32091533 denotes 7
32708755-31986264-20678623 618-619 31986264 denotes 8
32708755-32297671-20678624 620-621 32297671 denotes 9
32708755-32077115-20678625 888-889 32077115 denotes 1
32708755-32077115-20678626 1128-1129 32077115 denotes 1
32708755-32161940-20678627 1130-1131 32161940 denotes 2
32708755-32171076-20678628 1132-1133 32171076 denotes 3
32708755-32109013-20678629 1136-1137 32109013 denotes 5
32708755-32294485-20678630 1138-1139 32294485 denotes 6
32708755-32091533-20678631 1140-1141 32091533 denotes 7
32708755-31986264-20678632 1142-1143 31986264 denotes 8
32708755-32297671-20678633 1144-1145 32297671 denotes 9
32708755-32294485-20678634 1412-1413 32294485 denotes 6
32708755-32077115-20678635 1493-1494 32077115 denotes 1
32708755-32161940-20678636 1495-1496 32161940 denotes 2
32708755-32171076-20678637 1497-1498 32171076 denotes 3
32708755-32109013-20678638 1501-1502 32109013 denotes 5
32708755-32091533-20678639 1503-1504 32091533 denotes 7
32708755-31986264-20678640 1505-1506 31986264 denotes 8
32708755-32297671-20678641 1507-1508 32297671 denotes 9
32708755-32294485-20678642 1595-1596 32294485 denotes 6
32708755-31230828-20678643 1617-1619 31230828 denotes 10
32708755-32077115-20678644 1699-1700 32077115 denotes 1
32708755-29449338-20678645 2250-2252 29449338 denotes 11
32708755-32077115-20678646 2676-2677 32077115 denotes 1
32708755-32161940-20678647 2678-2679 32161940 denotes 2
32708755-32171076-20678648 2680-2681 32171076 denotes 3
32708755-32109013-20678649 2684-2685 32109013 denotes 5
32708755-32294485-20678650 2686-2687 32294485 denotes 6
32708755-32091533-20678651 2688-2689 32091533 denotes 7
32708755-31986264-20678652 2690-2691 31986264 denotes 8
32708755-32297671-20678653 2692-2693 32297671 denotes 9
32708755-22386035-20678654 2765-2767 22386035 denotes 12