PMC:7405836 / 9342-22626
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T97561 | 56-59 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T3215 | 1292-1296 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T55185 | 1392-1395 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T57154 | 1396-1402 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T31557 | 1471-1477 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T58680 | 1734-1737 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T56769 | 2006-2012 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T67784 | 2061-2077 | Body_part | denotes | structural genes | http://purl.org/sig/ont/fma/fma74402 |
| T16392 | 2177-2181 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T43992 | 2224-2240 | Body_part | denotes | structural genes | http://purl.org/sig/ont/fma/fma74402 |
| T67915 | 2333-2341 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T16102 | 2444-2450 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T48415 | 2473-2477 | Body_part | denotes | mRNA | http://purl.org/sig/ont/fma/fma67122 |
| T409 | 2639-2647 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T15201 | 2683-2687 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T17186 | 3238-3248 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T4307 | 3665-3681 | Body_part | denotes | structural genes | http://purl.org/sig/ont/fma/fma74402 |
| T53065 | 4122-4129 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T20479 | 4733-4740 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T27420 | 4774-4781 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T61724 | 4796-4801 | Body_part | denotes | helix | http://purl.org/sig/ont/fma/fma60992 |
| T16194 | 4899-4907 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T52269 | 5018-5030 | Body_part | denotes | Glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T90910 | 5045-5052 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T6390 | 5095-5116 | Body_part | denotes | transmembrane protein | http://purl.org/sig/ont/fma/fma67858 |
| T55301 | 5146-5153 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T95276 | 5172-5183 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
| T81422 | 5240-5251 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
| T95553 | 5467-5471 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T65392 | 5581-5587 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T45119 | 5649-5656 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T63666 | 5692-5700 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T95143 | 5787-5795 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T95436 | 6289-6296 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T39694 | 6406-6414 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T21074 | 6444-6454 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T80948 | 6484-6494 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
| T68680 | 6551-6562 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
| T78938 | 6662-6672 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T89404 | 7079-7085 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T52477 | 7169-7173 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T55542 | 7736-7743 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
| T74523 | 7750-7757 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T18598 | 7785-7792 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T37585 | 7982-7990 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T68033 | 8013-8023 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T24078 | 8112-8119 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T42949 | 8335-8342 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T9662 | 8374-8384 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T92572 | 8436-8443 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
| T6573 | 8462-8469 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T81130 | 8529-8537 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T17307 | 8763-8770 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T3919 | 8877-8884 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T27311 | 9056-9063 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T30130 | 9082-9092 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T92154 | 9140-9147 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
| T13665 | 9154-9161 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T82837 | 9271-9277 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T92091 | 9293-9300 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T46746 | 9485-9488 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T31431 | 9589-9595 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T26009 | 9713-9719 | Body_part | denotes | serine | http://purl.org/sig/ont/fma/fma82764 |
| T86388 | 9724-9732 | Body_part | denotes | arginine | http://purl.org/sig/ont/fma/fma82763 |
| T64065 | 9767-9773 | Body_part | denotes | serine | http://purl.org/sig/ont/fma/fma82764 |
| T38101 | 9778-9786 | Body_part | denotes | arginine | http://purl.org/sig/ont/fma/fma82763 |
| T98601 | 9856-9859 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T63939 | 9895-9899 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T65258 | 10026-10029 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T26171 | 10085-10092 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T21006 | 10120-10130 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T79154 | 10327-10335 | Body_part | denotes | Proteins | http://purl.org/sig/ont/fma/fma67257 |
| T94033 | 10369-10377 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T32909 | 10394-10400 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T45672 | 10469-10477 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T74876 | 10534-10542 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T46810 | 10612-10620 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T13888 | 10665-10672 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T63748 | 10708-10715 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T48025 | 10781-10789 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T28902 | 10822-10832 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T58100 | 11012-11024 | Body_part | denotes | Glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T29616 | 11025-11029 | Body_part | denotes | Gene | http://purl.org/sig/ont/fma/fma74402 |
| T60900 | 11094-11104 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T37693 | 11382-11392 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T55073 | 11534-11544 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T3191 | 11565-11575 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T29957 | 12480-12487 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T6 | 1456-1460 | Body_part | denotes | tail | http://purl.obolibrary.org/obo/UBERON_0002415 |
| T7 | 4796-4801 | Body_part | denotes | helix | http://purl.obolibrary.org/obo/UBERON_0002488 |
| T8 | 5581-5587 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T98 | 11-19 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T99 | 11-15 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T100 | 242-253 | Disease | denotes | common cold | http://purl.obolibrary.org/obo/MONDO_0005709 |
| T101 | 269-289 | Disease | denotes | respiratory diseases | http://purl.obolibrary.org/obo/MONDO_0005087 |
| T102 | 295-299 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T103 | 342-350 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T104 | 342-346 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T105 | 639-686 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T106 | 639-672 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T107 | 688-696 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T108 | 688-692 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T109 | 804-837 | Disease | denotes | Severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T110 | 902-906 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T111 | 918-926 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T112 | 918-922 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T113 | 1481-1489 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T114 | 1481-1485 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T115 | 1780-1788 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T116 | 1780-1784 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T117 | 2247-2255 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T118 | 2247-2251 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T119 | 2844-2852 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T120 | 2844-2848 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T121 | 2995-2999 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T122 | 3048-3056 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T123 | 3048-3052 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T124 | 3279-3287 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T125 | 3279-3283 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T126 | 3307-3315 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T127 | 3307-3311 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T128 | 3361-3365 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T129 | 3452-3460 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T130 | 3452-3456 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T131 | 3473-3481 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T132 | 3473-3477 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T133 | 3497-3505 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T134 | 3497-3501 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T135 | 3619-3627 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T136 | 3619-3623 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T137 | 3701-3709 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T138 | 3701-3705 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T139 | 3729-3733 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T140 | 3758-3766 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T141 | 3758-3762 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T142 | 3954-3958 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T143 | 4026-4030 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T144 | 4534-4542 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T145 | 4534-4538 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T146 | 4659-4667 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T147 | 4659-4663 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T148 | 5190-5200 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T149 | 5201-5211 | Disease | denotes | bronchitis | http://purl.obolibrary.org/obo/MONDO_0003781 |
| T150 | 5430-5440 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T151 | 6059-6062 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T153 | 6418-6426 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T154 | 6779-6787 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T155 | 6779-6783 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T156 | 6990-6998 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T157 | 6990-6994 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T158 | 7027-7035 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T159 | 7027-7031 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T160 | 8346-8354 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T161 | 8346-8350 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T162 | 8418-8426 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T163 | 8418-8422 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T164 | 9043-9051 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T165 | 9043-9047 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T166 | 9477-9480 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T168 | 9550-9553 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T170 | 10069-10077 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T171 | 10069-10073 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T172 | 10096-10104 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T173 | 10096-10100 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T174 | 10238-10241 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T176 | 10383-10391 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T177 | 10383-10387 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T178 | 10624-10632 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T179 | 10624-10628 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T180 | 10634-10642 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T181 | 10634-10638 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T182 | 10925-10933 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T183 | 10925-10929 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T184 | 10966-10974 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T185 | 10966-10970 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T186 | 10995-11003 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T187 | 10995-10999 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T188 | 11200-11208 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T189 | 11200-11204 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T190 | 11309-11317 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T191 | 11309-11313 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T192 | 11471-11475 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T193 | 11516-11524 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T194 | 11516-11520 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T195 | 11862-11870 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T196 | 11862-11866 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T197 | 12118-12126 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T198 | 12118-12122 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T199 | 12562-12570 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T200 | 12562-12566 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T201 | 12803-12811 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T202 | 12803-12807 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T203 | 12819-12823 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T204 | 12851-12859 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T205 | 12851-12855 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T206 | 13250-13254 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T35545 | 4-9 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | VIRUS |
| T88144 | 60-67 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T18398 | 210-216 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T3660 | 353-356 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T46247 | 391-392 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T44089 | 575-580 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T93862 | 592-597 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T57907 | 598-601 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T63589 | 746-753 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Viruses |
| T12099 | 783-788 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T16241 | 882-887 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T2621 | 932-933 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T86871 | 1141-1143 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T16373 | 1209-1213 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T19657 | 1292-1296 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T66275 | 1416-1418 | http://purl.obolibrary.org/obo/CLO_0007074 | denotes | kb |
| T45005 | 1416-1418 | http://purl.obolibrary.org/obo/CLO_0051988 | denotes | kb |
| T35656 | 1432-1433 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T69516 | 1453-1454 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T24441 | 1456-1460 | http://purl.obolibrary.org/obo/UBERON_0002415 | denotes | tail |
| T92697 | 1516-1517 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T85017 | 1549-1556 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T51486 | 1738-1745 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T62699 | 1800-1801 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T25841 | 1954-1959 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T76364 | 1978-1979 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T53349 | 2072-2077 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T30689 | 2100-2101 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T70922 | 2119-2124 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T59932 | 2137-2138 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T56925 | 2143-2144 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T49383 | 2177-2181 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T5940 | 2235-2240 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T86758 | 2258-2261 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T94196 | 2535-2536 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T62424 | 2597-2605 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T58532 | 2683-2687 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T71201 | 2689-2691 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 34 |
| T81895 | 2728-2729 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T67572 | 2802-2804 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
| T55965 | 2869-2870 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T82265 | 2935-2936 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T8748 | 2965-2972 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T22810 | 3077-3078 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T93066 | 3088-3093 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T53444 | 3184-3185 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T16126 | 3193-3194 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T52861 | 3382-3386 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T50725 | 3395-3397 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
| T29361 | 3426-3429 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T18080 | 3467-3472 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T54872 | 3491-3496 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T85624 | 3522-3523 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T67299 | 3676-3681 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T65625 | 3725-3728 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T5893 | 3796-3800 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T34134 | 3848-3849 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T69248 | 3882-3888 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T25458 | 3993-3997 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T92446 | 4055-4061 | http://purl.obolibrary.org/obo/NCBITaxon_9837 | denotes | camels |
| T2505 | 4105-4107 | http://purl.obolibrary.org/obo/CLO_0053794 | denotes | 41 |
| T82397 | 4215-4216 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T87267 | 4314-4315 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T86333 | 4319-4320 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T61879 | 4369-4374 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T69107 | 4638-4639 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T67548 | 4710-4711 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T10115 | 4763-4764 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T91278 | 4928-4936 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T71854 | 5056-5057 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T97323 | 5212-5217 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T49651 | 5296-5297 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T12838 | 5346-5347 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T50646 | 5467-5471 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T22585 | 5559-5560 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T63337 | 5633-5635 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T7231 | 5752-5754 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T89969 | 5816-5829 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organizations |
| T64278 | 5858-5860 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T31333 | 5865-5867 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T93842 | 5865-5867 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T90518 | 5889-5891 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T33265 | 5947-5949 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T55619 | 5947-5949 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T40645 | 5984-5986 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T45986 | 6204-6206 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T84021 | 6213-6215 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T85083 | 6311-6313 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T99435 | 6352-6354 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T97652 | 6352-6354 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T1834 | 6362-6364 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T3578 | 6441-6443 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T8835 | 6476-6477 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T73505 | 6570-6573 | http://purl.obolibrary.org/obo/CLO_0001409 | denotes | 528 |
| T58583 | 6634-6636 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T23988 | 7093-7098 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T13810 | 7169-7173 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T33275 | 7284-7285 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T63507 | 7454-7455 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T5066 | 7492-7497 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T10671 | 7575-7580 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T97239 | 7691-7696 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T25808 | 7700-7705 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T78760 | 7832-7833 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T15183 | 7872-7874 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T23598 | 7918-7919 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T6527 | 7928-7937 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organizer |
| T12003 | 8120-8123 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T4121 | 8164-8165 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T47456 | 8210-8211 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T5417 | 8553-8554 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T59324 | 8626-8631 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T37985 | 8633-8635 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
| T91644 | 8644-8645 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T87895 | 8661-8669 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T30412 | 8695-8696 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T61081 | 8920-8921 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T87404 | 8956-8957 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T9709 | 9072-9073 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T81401 | 9228-9229 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T90573 | 9393-9398 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T13118 | 9507-9508 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T74119 | 9534-9535 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T77281 | 9763-9765 | http://purl.obolibrary.org/obo/CLO_0009126 | denotes | SR |
| T2595 | 9895-9899 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T61322 | 9900-9909 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
| T45950 | 10487-10489 | http://purl.obolibrary.org/obo/CLO_0008339 | denotes | p6 |
| T38116 | 10548-10549 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T3669 | 10586-10588 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T74427 | 10677-10680 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T62291 | 10681-10682 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T80886 | 10761-10763 | http://purl.obolibrary.org/obo/CLO_0008339 | denotes | p6 |
| T63741 | 10906-10911 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T90002 | 10977-10982 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T3134 | 11025-11029 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | Gene |
| T62091 | 11365-11368 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T91591 | 11833-11834 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T79207 | 11886-11889 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T70060 | 11909-11910 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T23742 | 12269-12272 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T96383 | 12294-12298 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T48063 | 12317-12318 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T27036 | 12359-12366 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T38832 | 12489-12494 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T40021 | 12624-12625 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1642 | 12661-12662 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T41371 | 12737-12744 | http://purl.obolibrary.org/obo/UBERON_0000982 | denotes | jointly |
| T81447 | 12737-12744 | http://purl.obolibrary.org/obo/UBERON_0004905 | denotes | jointly |
| T30367 | 12815-12818 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T50486 | 12834-12837 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T74741 | 12953-12954 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T94159 | 13065-13071 | http://purl.obolibrary.org/obo/NCBITaxon_9796 | denotes | equine |
| T22104 | 13082-13087 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T51739 | 13118-13119 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T22238 | 13271-13272 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T23524 | 13273-13276 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T21 | 1756-1764 | Chemical | denotes | electron | http://purl.obolibrary.org/obo/CHEBI_10545 |
| T22 | 1986-1992 | Chemical | denotes | corona | http://purl.obolibrary.org/obo/CHEBI_37409 |
| T23 | 2081-2084 | Chemical | denotes | E-M | http://purl.obolibrary.org/obo/CHEBI_73507 |
| T24 | 2333-2341 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T25 | 2639-2647 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T26 | 3238-3248 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T27 | 4047-4050 | Chemical | denotes | cat | http://purl.obolibrary.org/obo/CHEBI_32402 |
| T28 | 4733-4740 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T29 | 4774-4781 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T30 | 4790-4795 | Chemical | denotes | alpha | http://purl.obolibrary.org/obo/CHEBI_30216 |
| T31 | 4806-4810 | Chemical | denotes | beta | http://purl.obolibrary.org/obo/CHEBI_10545 |
| T32 | 4899-4907 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T33 | 5018-5030 | Chemical | denotes | Glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T34 | 5045-5052 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T35 | 5109-5116 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T36 | 5146-5153 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T37 | 5172-5183 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T38 | 5172-5177 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T39 | 5178-5183 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T40 | 5240-5251 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T41 | 5240-5245 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T42 | 5246-5251 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T43 | 5348-5354 | Chemical | denotes | corona | http://purl.obolibrary.org/obo/CHEBI_37409 |
| T44 | 5358-5363 | Chemical | denotes | crown | http://purl.obolibrary.org/obo/CHEBI_37409 |
| T45 | 5649-5656 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T46 | 5692-5700 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T47 | 5787-5795 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T48 | 5865-5867 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T49 | 5947-5949 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T50 | 6289-6296 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T51 | 6352-6354 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T52 | 6406-6414 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T53 | 6444-6454 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T54 | 6444-6449 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T55 | 6450-6454 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T56 | 6484-6489 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T57 | 6490-6494 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T58 | 6551-6562 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T59 | 6551-6556 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T60 | 6557-6562 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T61 | 6662-6672 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T62 | 6662-6667 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T63 | 6668-6672 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T64 | 6728-6739 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
| T65 | 7736-7743 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T66 | 7750-7757 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T67 | 7785-7792 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T68 | 7982-7990 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T69 | 8013-8023 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T70 | 8013-8018 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T71 | 8019-8023 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T72 | 8112-8119 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T73 | 8172-8177 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T74 | 8217-8224 | Chemical | denotes | carboxy | http://purl.obolibrary.org/obo/CHEBI_46883 |
| T75 | 8335-8342 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T76 | 8374-8384 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T77 | 8374-8379 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T78 | 8380-8384 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T79 | 8436-8443 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T80 | 8462-8469 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T81 | 8529-8537 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T82 | 8670-8681 | Chemical | denotes | polypeptide | http://purl.obolibrary.org/obo/CHEBI_15841 |
| T83 | 8708-8711 | Chemical | denotes | ion | http://purl.obolibrary.org/obo/CHEBI_24870 |
| T84 | 8763-8770 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T85 | 8877-8884 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T86 | 8940-8945 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T87 | 9056-9063 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T88 | 9082-9092 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T89 | 9082-9087 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T90 | 9088-9092 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T91 | 9140-9147 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T92 | 9154-9161 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T93 | 9293-9300 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T94 | 9713-9719 | Chemical | denotes | serine | http://purl.obolibrary.org/obo/CHEBI_17822 |
| T95 | 9724-9732 | Chemical | denotes | arginine | http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_29016|http://purl.obolibrary.org/obo/CHEBI_32696 |
| T98 | 9767-9773 | Chemical | denotes | serine | http://purl.obolibrary.org/obo/CHEBI_17822 |
| T99 | 9778-9786 | Chemical | denotes | arginine | http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_29016|http://purl.obolibrary.org/obo/CHEBI_32696 |
| T102 | 9942-9951 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
| T103 | 9990-10000 | Chemical | denotes | antagonist | http://purl.obolibrary.org/obo/CHEBI_48706 |
| T104 | 10005-10015 | Chemical | denotes | interferon | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T105 | 10017-10020 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T106 | 10085-10092 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T107 | 10120-10130 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T108 | 10120-10125 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T109 | 10126-10130 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T110 | 10369-10377 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T111 | 10469-10477 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T112 | 10534-10542 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T113 | 10612-10620 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T114 | 10665-10672 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T115 | 10708-10715 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T116 | 10781-10789 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T117 | 10822-10832 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T118 | 10822-10827 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T119 | 10828-10832 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T120 | 11012-11024 | Chemical | denotes | Glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T121 | 11094-11104 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T122 | 11369-11371 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T123 | 11382-11392 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T124 | 11534-11544 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T125 | 11565-11575 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T126 | 11890-11892 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T127 | 12480-12487 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T128 | 12838-12840 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T92536 | 2549-2562 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T24596 | 2787-2800 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T68867 | 5588-5595 | http://purl.obolibrary.org/obo/GO_0009606 | denotes | tropism |
| T97335 | 5734-5750 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
| T96048 | 6897-6904 | http://purl.obolibrary.org/obo/GO_0009606 | denotes | tropism |
| T60831 | 8583-8595 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
| T2623 | 8697-8706 | http://purl.obolibrary.org/obo/GO_0039707 | denotes | viroporin |
| T70473 | 8708-8719 | http://purl.obolibrary.org/obo/GO_0022831 | denotes | ion channel |
| T71812 | 8797-8806 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | virulence |
| T78340 | 8797-8806 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | virulence |
| T63686 | 8857-8864 | http://purl.obolibrary.org/obo/GO_0009606 | denotes | tropism |
| T6706 | 9246-9255 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
| T85138 | 9327-9342 | http://purl.obolibrary.org/obo/GO_0019068 | denotes | virion assembly |
| T63681 | 9361-9374 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T76650 | 9900-9909 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T96883 | 9942-9960 | http://purl.obolibrary.org/obo/GO_0051607 | denotes | antiviral response |
| T60457 | 10026-10042 | http://purl.obolibrary.org/obo/GO_0016246 | denotes | RNA interference |
| T35914 | 10567-10584 | http://purl.obolibrary.org/obo/GO_0019079 | denotes | viral replication |
| T63895 | 10567-10584 | http://purl.obolibrary.org/obo/GO_0019058 | denotes | viral replication |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T59 | 0-22 | Sentence | denotes | THE VIRUS (SARS-CoV-2) |
| T60 | 23-164 | Sentence | denotes | Coronaviruses are positive-sense RNA viruses having an extensive and promiscuous range of natural hosts and affect multiple systems (23, 24). |
| T61 | 165-319 | Sentence | denotes | Coronaviruses can cause clinical diseases in humans that may extend from the common cold to more severe respiratory diseases like SARS and MERS (17, 279). |
| T62 | 320-586 | Sentence | denotes | The recently emerging SARS-CoV-2 has wrought havoc in China and caused a pandemic situation in the worldwide population, leading to disease outbreaks that have not been controlled to date, although extensive efforts are being put in place to counter this virus (25). |
| T63 | 587-917 | Sentence | denotes | This virus has been proposed to be designated/named severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) by the International Committee on Taxonomy of Viruses (ICTV), which determined the virus belongs to the Severe acute respiratory syndrome-related coronavirus category and found this virus is related to SARS-CoVs (26). |
| T64 | 918-1145 | Sentence | denotes | SARS-CoV-2 is a member of the order Nidovirales, family Coronaviridae, subfamily Orthocoronavirinae, which is subdivided into four genera, viz., Alphacoronavirus, Betacoronavirus, Gammacoronavirus, and Deltacoronavirus (3, 27). |
| T65 | 1146-1321 | Sentence | denotes | The genera Alphacoronavirus and Betacoronavirus originate from bats, while Gammacoronavirus and Deltacoronavirus have evolved from bird and swine gene pools (24, 28, 29, 275). |
| T66 | 1322-1466 | Sentence | denotes | Coronaviruses possess an unsegmented, single-stranded, positive-sense RNA genome of around 30 kb, enclosed by a 5′-cap and 3′-poly(A) tail (30). |
| T67 | 1467-1542 | Sentence | denotes | The genome of SARS-CoV-2 is 29,891 bp long, with a G+C content of 38% (31). |
| T68 | 1543-1618 | Sentence | denotes | These viruses are encircled with an envelope containing viral nucleocapsid. |
| T69 | 1619-1751 | Sentence | denotes | The nucleocapsids in CoVs are arranged in helical symmetry, which reflects an atypical attribute in positive-sense RNA viruses (30). |
| T70 | 1752-1997 | Sentence | denotes | The electron micrographs of SARS-CoV-2 revealed a diverging spherical outline with some degree of pleomorphism, virion diameters varying from 60 to 140 nm, and distinct spikes of 9 to 12 nm, giving the virus the appearance of a solar corona (3). |
| T71 | 1998-2108 | Sentence | denotes | The CoV genome is arranged linearly as 5′-leader-UTR-replicase-structural genes (S-E-M-N)-3′ UTR-poly(A) (32). |
| T72 | 2109-2246 | Sentence | denotes | Accessory genes, such as 3a/b, 4a/b, and the hemagglutinin-esterase gene (HE), are also seen intermingled with the structural genes (30). |
| T73 | 2247-2424 | Sentence | denotes | SARS-CoV-2 has also been found to be arranged similarly and encodes several accessory proteins, although it lacks the HE, which is characteristic of some betacoronaviruses (31). |
| T74 | 2425-2534 | Sentence | denotes | The positive-sense genome of CoVs serves as the mRNA and is translated to polyprotein 1a/1ab (pp1a/1ab) (33). |
| T75 | 2535-2693 | Sentence | denotes | A replication-transcription complex (RTC) is formed in double-membrane vesicles (DMVs) by nonstructural proteins (nsps), encoded by the polyprotein gene (34). |
| T76 | 2694-2806 | Sentence | denotes | Subsequently, the RTC synthesizes a nested set of subgenomic RNAs (sgRNAs) via discontinuous transcription (35). |
| T77 | 2807-2934 | Sentence | denotes | Based on molecular characterization, SARS-CoV-2 is considered a new Betacoronavirus belonging to the subgenus Sarbecovirus (3). |
| T78 | 2935-3038 | Sentence | denotes | A few other critical zoonotic viruses (MERS-related CoV and SARS-related CoV) belong to the same genus. |
| T79 | 3039-3222 | Sentence | denotes | However, SARS-CoV-2 was identified as a distinct virus based on the percent identity with other Betacoronavirus; conserved open reading frame 1a/b (ORF1a/b) is below 90% identity (3). |
| T80 | 3223-3399 | Sentence | denotes | An overall 80% nucleotide identity was observed between SARS-CoV-2 and the original SARS-CoV, along with 89% identity with ZC45 and ZXC21 SARS-related CoVs of bats (2, 31, 36). |
| T81 | 3400-3521 | Sentence | denotes | In addition, 82% identity has been observed between SARS-CoV-2 and human SARS-CoV Tor2 and human SARS-CoV BJ01 2003 (31). |
| T82 | 3522-3635 | Sentence | denotes | A sequence identity of only 51.8% was observed between MERS-related CoV and the recently emerged SARS-CoV-2 (37). |
| T83 | 3636-3746 | Sentence | denotes | Phylogenetic analysis of the structural genes also revealed that SARS-CoV-2 is closer to bat SARS-related CoV. |
| T84 | 3747-3894 | Sentence | denotes | Therefore, SARS-CoV-2 might have originated from bats, while other amplifier hosts might have played a role in disease transmission to humans (31). |
| T85 | 3895-4007 | Sentence | denotes | Of note, the other two zoonotic CoVs (MERS-related CoV and SARS-related CoV) also originated from bats (38, 39). |
| T86 | 4008-4109 | Sentence | denotes | Nevertheless, for SARS and MERS, civet cat and camels, respectively, act as amplifier hosts (40, 41). |
| T87 | 4110-4166 | Sentence | denotes | Coronavirus genomes and subgenomes encode six ORFs (31). |
| T88 | 4167-4241 | Sentence | denotes | The majority of the 5′ end is occupied by ORF1a/b, which produces 16 nsps. |
| T89 | 4242-4364 | Sentence | denotes | The two polyproteins, pp1a and pp1ab, are initially produced from ORF1a/b by a −1 frameshift between ORF1a and ORF1b (32). |
| T90 | 4365-4533 | Sentence | denotes | The virus-encoded proteases cleave polyproteins into individual nsps (main protease [Mpro], chymotrypsin-like protease [3CLpro], and papain-like proteases [PLPs]) (42). |
| T91 | 4534-4625 | Sentence | denotes | SARS-CoV-2 also encodes these nsps, and their functions have been elucidated recently (31). |
| T92 | 4626-4855 | Sentence | denotes | Remarkably, a difference between SARS-CoV-2 and other CoVs is the identification of a novel short putative protein within the ORF3 band, a secreted protein with an alpha helix and beta-sheet with six strands encoded by ORF8 (31). |
| T93 | 4856-5014 | Sentence | denotes | Coronaviruses encode four major structural proteins, namely, spike (S), membrane (M), envelope (E), and nucleocapsid (N), which are described in detail below. |
| T94 | 5016-5030 | Sentence | denotes | S Glycoprotein |
| T95 | 5031-5117 | Sentence | denotes | Coronavirus S protein is a large, multifunctional class I viral transmembrane protein. |
| T96 | 5118-5284 | Sentence | denotes | The size of this abundant S protein varies from 1,160 amino acids (IBV, infectious bronchitis virus, in poultry) to 1,400 amino acids (FCoV, feline coronavirus) (43). |
| T97 | 5285-5380 | Sentence | denotes | It lies in a trimer on the virion surface, giving the virion a corona or crown-like appearance. |
| T98 | 5381-5534 | Sentence | denotes | Functionally it is required for the entry of the infectious virion particles into the cell through interaction with various host cellular receptors (44). |
| T99 | 5535-5637 | Sentence | denotes | Furthermore, it acts as a critical factor for tissue tropism and the determination of host range (45). |
| T100 | 5638-5756 | Sentence | denotes | Notably, S protein is one of the vital immunodominant proteins of CoVs capable of inducing host immune responses (45). |
| T101 | 5757-5873 | Sentence | denotes | The ectodomains in all CoVs S proteins have similar domain organizations, divided into two subunits, S1 and S2 (43). |
| T102 | 5874-5971 | Sentence | denotes | The first one, S1, helps in host receptor binding, while the second one, S2, accounts for fusion. |
| T103 | 5972-6092 | Sentence | denotes | The former (S1) is further divided into two subdomains, namely, the N-terminal domain (NTD) and C-terminal domain (CTD). |
| T104 | 6093-6208 | Sentence | denotes | Both of these subdomains act as receptor-binding domains, interacting efficiently with various host receptors (45). |
| T105 | 6209-6262 | Sentence | denotes | The S1 CTD contains the receptor-binding motif (RBM). |
| T106 | 6263-6366 | Sentence | denotes | In each coronavirus spike protein, the trimeric S1 locates itself on top of the trimeric S2 stalk (45). |
| T107 | 6367-6508 | Sentence | denotes | Recently, structural analyses of the S proteins of COVID-19 have revealed 27 amino acid substitutions within a 1,273-amino-acid stretch (16). |
| T108 | 6509-6649 | Sentence | denotes | Six substitutions are located in the RBD (amino acids 357 to 528), while four substitutions are in the RBM at the CTD of the S1 domain (16). |
| T109 | 6650-6797 | Sentence | denotes | Of note, no amino acid change is seen in the RBM, which binds directly to the angiotensin-converting enzyme-2 (ACE2) receptor in SARS-CoV (16, 46). |
| T110 | 6798-6905 | Sentence | denotes | At present, the main emphasis is knowing how many differences would be required to change the host tropism. |
| T111 | 6906-7036 | Sentence | denotes | Sequence comparison revealed 17 nonsynonymous changes between the early sequence of SARS-CoV-2 and the later isolates of SARS-CoV. |
| T112 | 7037-7229 | Sentence | denotes | The changes were found scattered over the genome of the virus, with nine substitutions in ORF1ab, ORF8 (4 substitutions), the spike gene (3 substitutions), and ORF7a (single substitution) (4). |
| T113 | 7230-7394 | Sentence | denotes | Notably, the same nonsynonymous changes were found in a familial cluster, indicating that the viral evolution happened during person-to-person transmission (4, 47). |
| T114 | 7395-7527 | Sentence | denotes | Such adaptive evolution events are frequent and constitute a constantly ongoing process once the virus spreads among new hosts (47). |
| T115 | 7528-7732 | Sentence | denotes | Even though no functional changes occur in the virus associated with this adaptive evolution, close monitoring of the viral mutations that occur during subsequent human-to-human transmission is warranted. |
| T116 | 7734-7743 | Sentence | denotes | M Protein |
| T117 | 7744-7876 | Sentence | denotes | The M protein is the most abundant viral protein present in the virion particle, giving a definite shape to the viral envelope (48). |
| T118 | 7877-7967 | Sentence | denotes | It binds to the nucleocapsid and acts as a central organizer of coronavirus assembly (49). |
| T119 | 7968-8105 | Sentence | denotes | Coronavirus M proteins are highly diverse in amino acid contents but maintain overall structural similarity within different genera (50). |
| T120 | 8106-8257 | Sentence | denotes | The M protein has three transmembrane domains, flanked by a short amino terminus outside the virion and a long carboxy terminus inside the virion (50). |
| T121 | 8258-8319 | Sentence | denotes | Overall, the viral scaffold is maintained by M-M interaction. |
| T122 | 8320-8432 | Sentence | denotes | Of note, the M protein of SARS-CoV-2 does not have an amino acid substitution compared to that of SARS-CoV (16). |
| T123 | 8434-8443 | Sentence | denotes | E Protein |
| T124 | 8444-8543 | Sentence | denotes | The coronavirus E protein is the most enigmatic and smallest of the major structural proteins (51). |
| T125 | 8544-8637 | Sentence | denotes | It plays a multifunctional role in the pathogenesis, assembly, and release of the virus (52). |
| T126 | 8638-8726 | Sentence | denotes | It is a small integral membrane polypeptide that acts as a viroporin (ion channel) (53). |
| T127 | 8727-8870 | Sentence | denotes | The inactivation or absence of this protein is related to the altered virulence of coronaviruses due to changes in morphology and tropism (54). |
| T128 | 8871-9038 | Sentence | denotes | The E protein consists of three domains, namely, a short hydrophilic amino terminal, a large hydrophobic transmembrane domain, and an efficient C-terminal domain (51). |
| T129 | 9039-9136 | Sentence | denotes | The SARS-CoV-2 E protein reveals a similar amino acid constitution without any substitution (16). |
| T130 | 9138-9147 | Sentence | denotes | N Protein |
| T131 | 9148-9193 | Sentence | denotes | The N protein of coronavirus is multipurpose. |
| T132 | 9194-9408 | Sentence | denotes | Among several functions, it plays a role in complex formation with the viral genome, facilitates M protein interaction needed during virion assembly, and enhances the transcription efficiency of the virus (55, 56). |
| T133 | 9409-9545 | Sentence | denotes | It contains three highly conserved and distinct domains, namely, an NTD, an RNA-binding domain or a linker region (LKR), and a CTD (57). |
| T134 | 9546-9693 | Sentence | denotes | The NTD binds with the 3′ end of the viral genome, perhaps via electrostatic interactions, and is highly diverged both in length and sequence (58). |
| T135 | 9694-9800 | Sentence | denotes | The charged LKR is serine and arginine rich and is also known as the SR (serine and arginine) domain (59). |
| T136 | 9801-9919 | Sentence | denotes | The LKR is capable of direct interaction with in vitro RNA interaction and is responsible for cell signaling (60, 61). |
| T137 | 9920-10048 | Sentence | denotes | It also modulates the antiviral response of the host by working as an antagonist for interferon (IFN) and RNA interference (62). |
| T138 | 10049-10306 | Sentence | denotes | Compared to that of SARS-CoV, the N protein of SARS-CoV-2 possess five amino acid mutations, where two are in the intrinsically dispersed region (IDR; positions 25 and 26), one each in the NTD (position 103), LKR (position 217), and CTD (position 334) (16). |
| T139 | 10308-10335 | Sentence | denotes | nsps and Accessory Proteins |
| T140 | 10336-10523 | Sentence | denotes | Besides the important structural proteins, the SARS-CoV-2 genome contains 15 nsps, nsp1 to nsp10 and nsp12 to nsp16, and 8 accessory proteins (3a, 3b, p6, 7a, 7b, 8b, 9b, and ORF14) (16). |
| T141 | 10524-10590 | Sentence | denotes | All these proteins play a specific role in viral replication (27). |
| T142 | 10591-10721 | Sentence | denotes | Unlike the accessory proteins of SARS-CoV, SARS-CoV-2 does not contain 8a protein and has a longer 8b and shorter 3b protein (16). |
| T143 | 10722-10901 | Sentence | denotes | The nsp7, nsp13, envelope, matrix, and p6 and 8b accessory proteins have not been detected with any amino acid substitutions compared to the sequences of other coronaviruses (16). |
| T144 | 10902-10958 | Sentence | denotes | The virus structure of SARS-CoV-2 is depicted in Fig. 2. |
| T145 | 10959-10993 | Sentence | denotes | FIG 2 SARS-CoV-2 virus structure. |
| T146 | 10995-11038 | Sentence | denotes | SARS-CoV-2 Spike Glycoprotein Gene Analysis |
| T147 | 11040-11077 | Sentence | denotes | Sequence percent similarity analysis. |
| T148 | 11078-11254 | Sentence | denotes | We assessed the nucleotide percent similarity using the MegAlign software program, where the similarity between the novel SARS-CoV-2 isolates was in the range of 99.4% to 100%. |
| T149 | 11255-11442 | Sentence | denotes | Among the other Serbecovirus CoV sequences, the novel SARS-CoV-2 sequences revealed the highest similarity to bat-SL-CoV, with nucleotide percent identity ranges between 88.12 and 89.65%. |
| T150 | 11443-11551 | Sentence | denotes | Meanwhile, earlier reported SARS-CoVs showed 70.6 to 74.9% similarity to SARS-CoV-2 at the nucleotide level. |
| T151 | 11552-11764 | Sentence | denotes | Further, the nucleotide percent similarity was 55.4%, 45.5% to 47.9%, 46.2% to 46.6%, and 45.0% to 46.3% to the other four subgenera, namely, Hibecovirus, Nobecovirus, Merbecovirus, and Embecovirus, respectively. |
| T152 | 11765-11925 | Sentence | denotes | The percent similarity index of current outbreak isolates indicates a close relationship between SARS-CoV-2 isolates and bat-SL-CoV, indicating a common origin. |
| T153 | 11926-12216 | Sentence | denotes | However, particular pieces of evidence based on further complete genomic analysis of current isolates are necessary to draw any conclusions, although it was ascertained that the current novel SARS-CoV-2 isolates belong to the subgenus Sarbecovirus in the diverse range of betacoronaviruses. |
| T154 | 12217-12367 | Sentence | denotes | Their possible ancestor was hypothesized to be from bat CoV strains, wherein bats might have played a crucial role in harboring this class of viruses. |
| T155 | 12369-12399 | Sentence | denotes | SplitsTree phylogeny analysis. |
| T156 | 12400-12561 | Sentence | denotes | In the unrooted phylogenetic tree of different betacoronaviruses based on the S protein, virus sequences from different subgenera grouped into separate clusters. |
| T157 | 12562-12687 | Sentence | denotes | SARS-CoV-2 sequences from Wuhan and other countries exhibited a close relationship and appeared in a single cluster (Fig. 1). |
| T158 | 12688-12869 | Sentence | denotes | The CoVs from the subgenus Sarbecovirus appeared jointly in SplitsTree and divided into three subclusters, namely, SARS-CoV-2, bat-SARS-like-CoV (bat-SL-CoV), and SARS-CoV (Fig. 1). |
| T159 | 12870-13135 | Sentence | denotes | In the case of other subgenera, like Merbecovirus, all of the sequences grouped in a single cluster, whereas in Embecovirus, different species, comprised of canine respiratory CoVs, bovine CoVs, equine CoVs, and human CoV strain (OC43), grouped in a common cluster. |
| T160 | 13136-13284 | Sentence | denotes | Isolates in the subgenera Nobecovorus and Hibecovirus were found to be placed separately away from other reported SARS-CoVs but shared a bat origin. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T13 | 5201-5211 | Phenotype | denotes | bronchitis | http://purl.obolibrary.org/obo/HP_0012387 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 327 | 11-21 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 344 | 23-36 | Species | denotes | Coronaviruses | Tax:11118 |
| 345 | 165-178 | Species | denotes | Coronaviruses | Tax:11118 |
| 346 | 210-216 | Species | denotes | humans | Tax:9606 |
| 347 | 342-352 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 348 | 639-686 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
| 349 | 688-698 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 350 | 804-857 | Species | denotes | Severe acute respiratory syndrome-related coronavirus | Tax:694009 |
| 351 | 902-911 | Species | denotes | SARS-CoVs | Tax:694009 |
| 352 | 918-928 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 353 | 974-987 | Species | denotes | Coronaviridae | Tax:11118 |
| 354 | 1081-1096 | Species | denotes | Betacoronavirus | Tax:694002 |
| 355 | 1178-1193 | Species | denotes | Betacoronavirus | Tax:694002 |
| 356 | 1286-1291 | Species | denotes | swine | Tax:9823 |
| 357 | 374-379 | Species | denotes | China | Tax:998089 |
| 358 | 249-253 | Disease | denotes | cold | MESH:D000067390 |
| 359 | 269-289 | Disease | denotes | respiratory diseases | MESH:D012140 |
| 371 | 2126-2144 | Gene | denotes | such as 3a/b, 4a/b | |
| 372 | 1605-1617 | Gene | denotes | nucleocapsid | Gene:43740575 |
| 373 | 2597-2605 | Gene | denotes | membrane | Gene:43740571 |
| 374 | 1322-1335 | Species | denotes | Coronaviruses | Tax:11118 |
| 375 | 1481-1491 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 376 | 1640-1644 | Species | denotes | CoVs | Tax:11118 |
| 377 | 1780-1790 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 378 | 2002-2005 | Species | denotes | CoV | Tax:11118 |
| 379 | 2247-2257 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 380 | 2401-2418 | Species | denotes | betacoronaviruses | Tax:694002 |
| 381 | 2454-2458 | Species | denotes | CoVs | Tax:11118 |
| 412 | 3162-3185 | Gene | denotes | open reading frame 1a/b | |
| 413 | 3187-3194 | Gene | denotes | ORF1a/b | Gene:43740578 |
| 414 | 3725-3728 | Gene | denotes | bat | Gene:570 |
| 415 | 2844-2854 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 416 | 2875-2890 | Species | denotes | Betacoronavirus | Tax:694002 |
| 417 | 2987-2990 | Species | denotes | CoV | Tax:11118 |
| 418 | 2995-3011 | Species | denotes | SARS-related CoV | Tax:694009 |
| 419 | 3048-3058 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 420 | 3135-3150 | Species | denotes | Betacoronavirus | Tax:694002 |
| 421 | 3279-3289 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 422 | 3307-3315 | Species | denotes | SARS-CoV | Tax:694009 |
| 423 | 3361-3378 | Species | denotes | SARS-related CoVs | Tax:694009 |
| 424 | 3452-3462 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 425 | 3467-3472 | Species | denotes | human | Tax:9606 |
| 426 | 3473-3481 | Species | denotes | SARS-CoV | Tax:694009 |
| 427 | 3491-3496 | Species | denotes | human | Tax:9606 |
| 428 | 3497-3505 | Species | denotes | SARS-CoV | Tax:694009 |
| 429 | 3590-3593 | Species | denotes | CoV | Tax:11118 |
| 430 | 3619-3629 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 431 | 3701-3711 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 432 | 3729-3745 | Species | denotes | SARS-related CoV | Tax:694009 |
| 433 | 3758-3768 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 434 | 3882-3888 | Species | denotes | humans | Tax:9606 |
| 435 | 3927-3931 | Species | denotes | CoVs | Tax:11118 |
| 436 | 3946-3949 | Species | denotes | CoV | Tax:11118 |
| 437 | 3954-3970 | Species | denotes | SARS-related CoV | Tax:694009 |
| 438 | 4055-4061 | Species | denotes | camels | Tax:9838 |
| 439 | 3482-3486 | Species | denotes | Tor2 | Tax:227984 |
| 440 | 2956-2972 | Disease | denotes | zoonotic viruses | MESH:D015047 |
| 441 | 3918-3926 | Disease | denotes | zoonotic | MESH:D015047 |
| 451 | 4209-4216 | Gene | denotes | ORF1a/b | Gene:43740578 |
| 452 | 4264-4268 | Gene | denotes | pp1a | Gene:5499 |
| 453 | 4308-4315 | Gene | denotes | ORF1a/b | Gene:43740578 |
| 454 | 4450-4454 | Gene | denotes | Mpro | Gene:8673700 |
| 455 | 4845-4849 | Gene | denotes | ORF8 | Gene:43740577 |
| 456 | 4110-4121 | Species | denotes | Coronavirus | Tax:11118 |
| 457 | 4534-4544 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 458 | 4659-4669 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 459 | 4680-4684 | Species | denotes | CoVs | Tax:11118 |
| 468 | 4924-4925 | Gene | denotes | S | Gene:43740568 |
| 469 | 4928-4936 | Gene | denotes | membrane | Gene:43740571 |
| 470 | 4938-4939 | Gene | denotes | M | Gene:43740571 |
| 471 | 4960-4972 | Gene | denotes | nucleocapsid | Gene:43740575 |
| 472 | 4974-4975 | Gene | denotes | N | Gene:43740575 |
| 473 | 4952-4953 | Gene | denotes | E | Gene:43740570 |
| 474 | 4917-4922 | Gene | denotes | spike | Gene:43740568 |
| 475 | 4856-4869 | Species | denotes | Coronaviruses | Tax:11118 |
| 477 | 5016-5017 | Gene | denotes | S | Gene:43740568 |
| 483 | 5043-5044 | Gene | denotes | S | Gene:43740568 |
| 484 | 5031-5042 | Species | denotes | Coronavirus | Tax:11118 |
| 485 | 5190-5217 | Species | denotes | infectious bronchitis virus | Tax:11120 |
| 486 | 5259-5277 | Species | denotes | feline coronavirus | Tax:12663 |
| 487 | 5430-5440 | Species | denotes | infectious | Tax:11120 |
| 505 | 6728-6759 | Gene | denotes | angiotensin-converting enzyme-2 | Gene:59272 |
| 506 | 6761-6765 | Gene | denotes | ACE2 | Gene:59272 |
| 507 | 7127-7133 | Gene | denotes | ORF1ab | Gene:43740578 |
| 508 | 7135-7139 | Gene | denotes | ORF8 | Gene:43740577 |
| 509 | 7197-7202 | Gene | denotes | ORF7a | Gene:43740573 |
| 510 | 7163-7168 | Gene | denotes | spike | Gene:43740568 |
| 511 | 6283-6288 | Gene | denotes | spike | Gene:43740568 |
| 512 | 5704-5708 | Species | denotes | CoVs | Tax:11118 |
| 513 | 5780-5784 | Species | denotes | CoVs | Tax:11118 |
| 514 | 6271-6282 | Species | denotes | coronavirus | Tax:11118 |
| 515 | 6779-6787 | Species | denotes | SARS-CoV | Tax:694009 |
| 516 | 6990-7000 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 517 | 7027-7035 | Species | denotes | SARS-CoV | Tax:694009 |
| 518 | 7691-7696 | Species | denotes | human | Tax:9606 |
| 519 | 7700-7705 | Species | denotes | human | Tax:9606 |
| 520 | 7295-7302 | Species | denotes | cluster | Tax:100569 |
| 521 | 6418-6426 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 523 | 7734-7735 | Gene | denotes | M | Gene:43740571 |
| 531 | 8333-8334 | Gene | denotes | M | Gene:43740571 |
| 532 | 7748-7749 | Gene | denotes | M | Gene:43740571 |
| 533 | 7893-7905 | Gene | denotes | nucleocapsid | Gene:43740575 |
| 534 | 7941-7952 | Species | denotes | coronavirus | Tax:11118 |
| 535 | 7968-7979 | Species | denotes | Coronavirus | Tax:11118 |
| 536 | 8346-8356 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 537 | 8418-8426 | Species | denotes | SARS-CoV | Tax:694009 |
| 539 | 8434-8435 | Gene | denotes | E | Gene:43740570 |
| 545 | 9054-9055 | Gene | denotes | E | Gene:43740570 |
| 546 | 8661-8669 | Gene | denotes | membrane | Gene:43740571 |
| 547 | 8448-8459 | Species | denotes | coronavirus | Tax:11118 |
| 548 | 8810-8823 | Species | denotes | coronaviruses | Tax:11118 |
| 549 | 9043-9053 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 551 | 9138-9139 | Gene | denotes | N | Gene:43740575 |
| 561 | 9291-9292 | Gene | denotes | M | Gene:43740571 |
| 562 | 9165-9176 | Species | denotes | coronavirus | Tax:11118 |
| 563 | 10069-10077 | Species | denotes | SARS-CoV | Tax:694009 |
| 564 | 10096-10106 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 565 | 9713-9719 | Chemical | denotes | serine | MESH:D012694 |
| 566 | 9724-9732 | Chemical | denotes | arginine | MESH:D001120 |
| 567 | 9763-9765 | Chemical | denotes | SR | MESH:D013324 |
| 568 | 9767-9773 | Chemical | denotes | serine | MESH:D012694 |
| 569 | 9778-9786 | Chemical | denotes | arginine | MESH:D001120 |
| 575 | 10419-10423 | Gene | denotes | nsp1 | Gene:10045 |
| 576 | 10383-10393 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 577 | 10624-10632 | Species | denotes | SARS-CoV | Tax:694009 |
| 578 | 10634-10644 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 579 | 10882-10895 | Species | denotes | coronaviruses | Tax:11118 |
| 581 | 10925-10935 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 583 | 10966-10976 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 585 | 10995-11005 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 600 | 12269-12272 | Gene | denotes | bat | Gene:570 |
| 601 | 11886-11889 | Gene | denotes | bat | Gene:570 |
| 602 | 11365-11368 | Gene | denotes | bat | Gene:570 |
| 603 | 11200-11210 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 604 | 11284-11287 | Species | denotes | CoV | Tax:11118 |
| 605 | 11309-11319 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 606 | 11372-11375 | Species | denotes | CoV | Tax:11118 |
| 607 | 11471-11480 | Species | denotes | SARS-CoVs | Tax:694009 |
| 608 | 11516-11526 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 609 | 11862-11872 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 610 | 11893-11896 | Species | denotes | CoV | Tax:11118 |
| 611 | 12118-12128 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 612 | 12198-12215 | Species | denotes | betacoronaviruses | Tax:694002 |
| 613 | 12273-12276 | Species | denotes | CoV | Tax:11118 |
| 637 | 13273-13276 | Gene | denotes | bat | Gene:570 |
| 638 | 12834-12837 | Gene | denotes | bat | Gene:570 |
| 639 | 12815-12818 | Gene | denotes | bat | Gene:570 |
| 640 | 12447-12464 | Species | denotes | betacoronaviruses | Tax:694002 |
| 641 | 12562-12572 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 642 | 12670-12682 | Species | denotes | cluster (Fig | Tax:100569 |
| 643 | 12692-12696 | Species | denotes | CoVs | Tax:11118 |
| 644 | 12803-12813 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 645 | 12829-12832 | Species | denotes | CoV | Tax:11118 |
| 646 | 12841-12844 | Species | denotes | CoV | Tax:11118 |
| 647 | 12851-12859 | Species | denotes | SARS-CoV | Tax:694009 |
| 648 | 13027-13033 | Species | denotes | canine | Tax:9615 |
| 649 | 13046-13050 | Species | denotes | CoVs | Tax:11118 |
| 650 | 13052-13058 | Species | denotes | bovine | Tax:9913 |
| 651 | 13059-13063 | Species | denotes | CoVs | Tax:11118 |
| 652 | 13065-13071 | Species | denotes | equine | Tax:9796 |
| 653 | 13072-13076 | Species | denotes | CoVs | Tax:11118 |
| 654 | 13082-13087 | Species | denotes | human | Tax:9606 |
| 655 | 13088-13091 | Species | denotes | CoV | Tax:11118 |
| 656 | 13250-13259 | Species | denotes | SARS-CoVs | Tax:694009 |
| 657 | 12962-12969 | Species | denotes | cluster | Tax:100569 |
| 658 | 13127-13134 | Species | denotes | cluster | Tax:100569 |
| 659 | 13100-13104 | Species | denotes | OC43 | Tax:31631 |