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PMC:7405836 / 66297-67322
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T205 | 259-265 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
T206 | 352-362 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
T207 | 404-414 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T208 | 619-621 | Body_part | denotes | nt | http://purl.org/sig/ont/fma/fma82740 |
T209 | 639-641 | Body_part | denotes | nt | http://purl.org/sig/ont/fma/fma82740 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T618 | 741-749 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T619 | 741-745 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T620 | 815-823 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T621 | 815-819 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T622 | 1008-1016 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T623 | 1008-1012 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T673 | 529-533 | http://purl.obolibrary.org/obo/CLO_0007486 | denotes | M, 8 |
T674 | 715-716 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T97092 | 352-362 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
T55801 | 404-414 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T94039 | 404-409 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T11522 | 410-414 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T475 | 0-272 | Sentence | denotes | Recently, 95 full-length genomic sequences of SARAS-CoV-2 strains available in the National Center for Biotechnology Information and GISAID databases were subjected to multiple-sequence alignment and phylogenetic analyses for studying variations in the viral genome (260). |
T476 | 273-421 | Sentence | denotes | All the viral strains revealed high homology of 99.99% (99.91% to 100%) at the nucleotide level and 99.99% (99.79% to 100%) at the amino acid level. |
T477 | 422-549 | Sentence | denotes | Overall variation was found to be low in ORF regions, with 13 variation sites recognized in 1a, 1b, S, 3a, M, 8, and N regions. |
T478 | 550-679 | Sentence | denotes | Mutation rates of 30.53% (29/95) and 29.47% (28/95) were observed at nt 28144 (ORF8) and nt 8782 (ORF1a) positions, respectively. |
T479 | 680-810 | Sentence | denotes | Owing to such selective mutations, a few specific regions of SARS-CoV-2 should not be considered for designing primers and probes. |
T480 | 811-1025 | Sentence | denotes | The SARS-CoV-2 reference sequence could pave the way to study molecular biology and pathobiology, along with developing diagnostics and appropriate prevention and control strategies for countering SARS-CoV-2 (260). |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
2030 | 539-540 | Gene | denotes | N | Gene:43740575 |
2031 | 522-523 | Gene | denotes | S | Gene:43740568 |
2032 | 529-530 | Gene | denotes | M | Gene:43740571 |
2033 | 629-633 | Gene | denotes | ORF8 | Gene:43740577 |
2034 | 52-57 | Species | denotes | CoV-2 | Tax:2697049 |
2035 | 741-751 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
2036 | 815-825 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
2037 | 1008-1018 | Species | denotes | SARS-CoV-2 | Tax:2697049 |