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PMC:7405836 / 66297-67322 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T205 259-265 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T206 352-362 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T207 404-414 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T208 619-621 Body_part denotes nt http://purl.org/sig/ont/fma/fma82740
T209 639-641 Body_part denotes nt http://purl.org/sig/ont/fma/fma82740

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T618 741-749 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T619 741-745 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T620 815-823 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T621 815-819 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T622 1008-1016 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T623 1008-1012 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T673 529-533 http://purl.obolibrary.org/obo/CLO_0007486 denotes M, 8
T674 715-716 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T97092 352-362 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T55801 404-414 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T94039 404-409 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T11522 410-414 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T475 0-272 Sentence denotes Recently, 95 full-length genomic sequences of SARAS-CoV-2 strains available in the National Center for Biotechnology Information and GISAID databases were subjected to multiple-sequence alignment and phylogenetic analyses for studying variations in the viral genome (260).
T476 273-421 Sentence denotes All the viral strains revealed high homology of 99.99% (99.91% to 100%) at the nucleotide level and 99.99% (99.79% to 100%) at the amino acid level.
T477 422-549 Sentence denotes Overall variation was found to be low in ORF regions, with 13 variation sites recognized in 1a, 1b, S, 3a, M, 8, and N regions.
T478 550-679 Sentence denotes Mutation rates of 30.53% (29/95) and 29.47% (28/95) were observed at nt 28144 (ORF8) and nt 8782 (ORF1a) positions, respectively.
T479 680-810 Sentence denotes Owing to such selective mutations, a few specific regions of SARS-CoV-2 should not be considered for designing primers and probes.
T480 811-1025 Sentence denotes The SARS-CoV-2 reference sequence could pave the way to study molecular biology and pathobiology, along with developing diagnostics and appropriate prevention and control strategies for countering SARS-CoV-2 (260).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2030 539-540 Gene denotes N Gene:43740575
2031 522-523 Gene denotes S Gene:43740568
2032 529-530 Gene denotes M Gene:43740571
2033 629-633 Gene denotes ORF8 Gene:43740577
2034 52-57 Species denotes CoV-2 Tax:2697049
2035 741-751 Species denotes SARS-CoV-2 Tax:2697049
2036 815-825 Species denotes SARS-CoV-2 Tax:2697049
2037 1008-1018 Species denotes SARS-CoV-2 Tax:2697049