PMC:7405836 / 40782-41359 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7405836","sourcedb":"PMC","sourceid":"7405836","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7405836","text":"Similarly, the destabilizing mutation near the phosphatase domain of nsp3 proteins in SARS-CoV-2 could indicate a potential mechanism that differentiates it from other CoVs (100). Even though the CFR reported for COVID-19 is meager compared to those of the previous SARS and MERS outbreaks, it has caused more deaths than SARS and MERS combined (101). Possibly related to the viral pathogenesis is the recent finding of an 832-nucleotide (nt) deletion in ORF8, which appears to reduce the replicative fitness of the virus and leads to attenuated phenotypes of SARS-CoV-2 (256).","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T125","span":{"begin":74,"end":82},"obj":"Body_part"},{"id":"T126","span":{"begin":427,"end":437},"obj":"Body_part"},{"id":"T127","span":{"begin":439,"end":441},"obj":"Body_part"}],"attributes":[{"id":"A125","pred":"fma_id","subj":"T125","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A126","pred":"fma_id","subj":"T126","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A127","pred":"fma_id","subj":"T127","obj":"http://purl.org/sig/ont/fma/fma82740"},{"subj":"T125","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T126","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T127","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T371","span":{"begin":86,"end":94},"obj":"Disease"},{"id":"T372","span":{"begin":86,"end":90},"obj":"Disease"},{"id":"T373","span":{"begin":213,"end":221},"obj":"Disease"},{"id":"T374","span":{"begin":266,"end":270},"obj":"Disease"},{"id":"T375","span":{"begin":322,"end":326},"obj":"Disease"},{"id":"T376","span":{"begin":560,"end":568},"obj":"Disease"},{"id":"T377","span":{"begin":560,"end":564},"obj":"Disease"}],"attributes":[{"id":"A371","pred":"mondo_id","subj":"T371","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A372","pred":"mondo_id","subj":"T372","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A373","pred":"mondo_id","subj":"T373","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A374","pred":"mondo_id","subj":"T374","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A375","pred":"mondo_id","subj":"T375","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A376","pred":"mondo_id","subj":"T376","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A377","pred":"mondo_id","subj":"T377","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T371","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T372","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T373","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T374","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T375","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T376","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T377","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T72963","span":{"begin":112,"end":113},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T65345","span":{"begin":294,"end":297},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T84390","span":{"begin":516,"end":521},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"}],"attributes":[{"subj":"T72963","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T65345","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T84390","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T139","span":{"begin":74,"end":82},"obj":"Chemical"},{"id":"T140","span":{"begin":427,"end":437},"obj":"Chemical"},{"id":"T141","span":{"begin":439,"end":441},"obj":"Chemical"}],"attributes":[{"id":"A139","pred":"chebi_id","subj":"T139","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A140","pred":"chebi_id","subj":"T140","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A141","pred":"chebi_id","subj":"T141","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"subj":"T139","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T140","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T141","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T86468","span":{"begin":47,"end":58},"obj":"http://purl.obolibrary.org/obo/GO_0016791"},{"id":"T29542","span":{"begin":382,"end":394},"obj":"http://purl.obolibrary.org/obo/GO_0009405"}],"attributes":[{"subj":"T86468","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T29542","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T280","span":{"begin":0,"end":179},"obj":"Sentence"},{"id":"T281","span":{"begin":180,"end":351},"obj":"Sentence"},{"id":"T282","span":{"begin":352,"end":577},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T280","pred":"source","obj":"LitCovid-sentences"},{"subj":"T281","pred":"source","obj":"LitCovid-sentences"},{"subj":"T282","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"1145","span":{"begin":69,"end":73},"obj":"Gene"},{"id":"1146","span":{"begin":455,"end":459},"obj":"Gene"},{"id":"1147","span":{"begin":86,"end":96},"obj":"Species"},{"id":"1148","span":{"begin":168,"end":172},"obj":"Species"},{"id":"1149","span":{"begin":560,"end":570},"obj":"Species"},{"id":"1150","span":{"begin":423,"end":437},"obj":"Chemical"},{"id":"1151","span":{"begin":439,"end":441},"obj":"Chemical"},{"id":"1152","span":{"begin":213,"end":221},"obj":"Disease"},{"id":"1153","span":{"begin":310,"end":316},"obj":"Disease"}],"attributes":[{"id":"A1145","pred":"tao:has_database_id","subj":"1145","obj":"Gene:10044"},{"id":"A1146","pred":"tao:has_database_id","subj":"1146","obj":"Gene:43740577"},{"id":"A1147","pred":"tao:has_database_id","subj":"1147","obj":"Tax:2697049"},{"id":"A1148","pred":"tao:has_database_id","subj":"1148","obj":"Tax:11118"},{"id":"A1149","pred":"tao:has_database_id","subj":"1149","obj":"Tax:2697049"},{"id":"A1152","pred":"tao:has_database_id","subj":"1152","obj":"MESH:C000657245"},{"id":"A1153","pred":"tao:has_database_id","subj":"1153","obj":"MESH:D003643"},{"subj":"1145","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1146","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1147","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1148","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1149","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1150","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1151","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1152","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1153","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93a7","default":true},{"id":"LitCovid-PD-MONDO","color":"#93c1ec"},{"id":"LitCovid-PD-CLO","color":"#dbec93"},{"id":"LitCovid-PD-CHEBI","color":"#e293ec"},{"id":"LitCovid-PD-GO-BP","color":"#93ecc8"},{"id":"LitCovid-sentences","color":"#ecae93"},{"id":"LitCovid-PubTator","color":"#9493ec"}]}]}}