PMC:7405836 / 37681-45317
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T67588 | 204-209 | Body_part | denotes | organ | http://purl.org/sig/ont/fma/fma67498 |
| T15622 | 1179-1193 | Body_part | denotes | immune systems | http://purl.org/sig/ont/fma/fma9825 |
| T92882 | 1235-1239 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T70939 | 2508-2514 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T34650 | 2663-2670 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T42759 | 3044-3052 | Body_part | denotes | endosome | http://purl.org/sig/ont/fma/fma67180 |
| T123 | 3064-3071 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T124 | 3092-3099 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T125 | 3175-3183 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T126 | 3528-3538 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T127 | 3540-3542 | Body_part | denotes | nt | http://purl.org/sig/ont/fma/fma82740 |
| T128 | 4123-4127 | Body_part | denotes | palm | http://purl.org/sig/ont/fma/fma24920 |
| T129 | 5179-5187 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T130 | 6337-6341 | Body_part | denotes | milk | http://purl.org/sig/ont/fma/fma62100 |
| T131 | 6343-6348 | Body_part | denotes | urine | http://purl.org/sig/ont/fma/fma12274 |
| T132 | 6350-6355 | Body_part | denotes | feces | http://purl.org/sig/ont/fma/fma64183 |
| T133 | 6371-6374 | Body_part | denotes | eye | http://purl.org/sig/ont/fma/fma54448 |
| T134 | 6767-6771 | Body_part | denotes | palm | http://purl.org/sig/ont/fma/fma24920 |
| T135 | 6962-6972 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T17 | 204-209 | Body_part | denotes | organ | http://purl.obolibrary.org/obo/UBERON_0000062 |
| T18 | 1179-1193 | Body_part | denotes | immune systems | http://purl.obolibrary.org/obo/UBERON_0002405 |
| T19 | 1235-1239 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T20 | 6337-6341 | Body_part | denotes | milk | http://purl.obolibrary.org/obo/UBERON_0001913 |
| T21 | 6343-6348 | Body_part | denotes | urine | http://purl.obolibrary.org/obo/UBERON_0001088 |
| T22 | 6350-6355 | Body_part | denotes | feces | http://purl.obolibrary.org/obo/UBERON_0001988 |
| T23 | 6371-6374 | Body_part | denotes | eye | http://purl.obolibrary.org/obo/UBERON_0000970 |
| T24 | 6418-6424 | Body_part | denotes | organs | http://purl.obolibrary.org/obo/UBERON_0000062 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T332 | 24-28 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T333 | 40-48 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T334 | 61-70 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T335 | 124-144 | Disease | denotes | respiratory diseases | http://purl.obolibrary.org/obo/MONDO_0005087 |
| T336 | 170-182 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T337 | 303-314 | Disease | denotes | common cold | http://purl.obolibrary.org/obo/MONDO_0005709 |
| T338 | 353-361 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T339 | 353-357 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T340 | 513-517 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T341 | 570-578 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T342 | 869-877 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T343 | 869-873 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T344 | 966-975 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T345 | 1240-1252 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T346 | 1274-1283 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T347 | 1290-1294 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T348 | 1306-1325 | Disease | denotes | respiratory disease | http://purl.obolibrary.org/obo/MONDO_0005087 |
| T349 | 1515-1519 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T350 | 1747-1755 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T351 | 1747-1751 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T352 | 1759-1767 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T353 | 1791-1799 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T354 | 1791-1795 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T355 | 1896-1905 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T356 | 2011-2030 | Disease | denotes | respiratory disease | http://purl.obolibrary.org/obo/MONDO_0005087 |
| T357 | 2224-2232 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T358 | 2224-2228 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T359 | 2236-2244 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T360 | 2236-2240 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T361 | 2329-2337 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T362 | 2329-2333 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T363 | 2548-2556 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T364 | 2548-2552 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T365 | 2564-2568 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T366 | 2650-2658 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T367 | 2650-2654 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T368 | 2698-2702 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T369 | 2929-2937 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T370 | 2929-2933 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T371 | 3187-3195 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T372 | 3187-3191 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T373 | 3314-3322 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T374 | 3367-3371 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T375 | 3423-3427 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T376 | 3661-3669 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T377 | 3661-3665 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T378 | 3810-3814 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T379 | 3951-3959 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T380 | 3951-3955 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T381 | 3963-3971 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T382 | 4039-4047 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T383 | 4039-4043 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T384 | 4061-4070 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T385 | 4138-4146 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T386 | 4138-4142 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T387 | 4184-4193 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T388 | 4250-4254 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T389 | 4389-4397 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T390 | 4529-4533 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T391 | 4615-4619 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T392 | 4643-4651 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T393 | 4643-4647 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T394 | 5210-5219 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T395 | 5967-5976 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T396 | 6060-6069 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T397 | 6175-6184 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T398 | 6514-6523 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T399 | 6701-6705 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T400 | 6716-6724 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T401 | 6716-6720 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T402 | 7131-7139 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T403 | 7131-7135 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T404 | 7289-7293 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T405 | 7541-7559 | Disease | denotes | SARS-CoV infection | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T406 | 7541-7545 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T407 | 7550-7559 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T82383 | 17-23 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Humans |
| T92525 | 74-80 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T49894 | 204-209 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organ |
| T28986 | 318-324 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T36295 | 428-434 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T96338 | 436-438 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T70007 | 589-594 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T3204 | 598-603 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T46420 | 707-712 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T28779 | 1179-1193 | http://purl.obolibrary.org/obo/UBERON_0002405 | denotes | immune systems |
| T11516 | 1235-1239 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T75600 | 1235-1239 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T84515 | 1298-1299 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T84569 | 1336-1337 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T46027 | 1360-1366 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T39494 | 1448-1453 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T57954 | 1498-1504 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T36452 | 1698-1700 | http://purl.obolibrary.org/obo/CLO_0001527 | denotes | 94 |
| T69592 | 1814-1815 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T43092 | 1906-1913 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T19152 | 1978-1979 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T81597 | 2123-2124 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T29637 | 2139-2141 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
| T76194 | 2460-2461 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T15423 | 2478-2481 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T30087 | 2616-2617 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T58006 | 2768-2769 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T92804 | 2800-2805 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T87530 | 2854-2855 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T16856 | 3000-3001 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T72963 | 3213-3214 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T65345 | 3395-3398 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T84390 | 3617-3622 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T94170 | 3724-3725 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T4183 | 3726-3731 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T45224 | 3737-3740 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T60784 | 3785-3792 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
| T37775 | 3796-3802 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T10395 | 3839-3842 | http://purl.obolibrary.org/obo/CLO_0054060 | denotes | 102 |
| T53192 | 3912-3915 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T86259 | 3974-3978 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | Bats |
| T10987 | 3997-3998 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T35344 | 4165-4170 | http://purl.obolibrary.org/obo/NCBITaxon_9837 | denotes | camel |
| T35883 | 4195-4198 | http://purl.obolibrary.org/obo/CLO_0054060 | denotes | 102 |
| T78999 | 4201-4205 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | Bats |
| T29923 | 4271-4275 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | Bats |
| T93951 | 4318-4323 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T31352 | 4561-4565 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T83875 | 4668-4672 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T85133 | 4856-4861 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T41290 | 4899-4905 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T17817 | 5060-5066 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T48131 | 5096-5099 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T14746 | 5204-5209 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T44907 | 5316-5320 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T44349 | 5327-5328 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T76481 | 5560-5564 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T31205 | 5568-5575 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
| T49133 | 5580-5586 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T6384 | 5619-5622 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T41688 | 5666-5673 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T49714 | 5736-5737 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T88218 | 5755-5758 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T59283 | 6038-6044 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T38682 | 6073-6079 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T90852 | 6098-6104 | http://purl.obolibrary.org/obo/NCBITaxon_9837 | denotes | camels |
| T20846 | 6134-6140 | http://purl.obolibrary.org/obo/NCBITaxon_9837 | denotes | camels |
| T29084 | 6220-6227 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
| T65204 | 6228-6236 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | actively |
| T424 | 6261-6264 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T425 | 6289-6295 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T426 | 6371-6374 | http://www.ebi.ac.uk/efo/EFO_0000827 | denotes | eye |
| T427 | 6418-6424 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organs |
| T428 | 6435-6436 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T429 | 6487-6493 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T430 | 6625-6631 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T431 | 6661-6667 | http://purl.obolibrary.org/obo/NCBITaxon_9837 | denotes | camels |
| T432 | 6730-6737 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T433 | 6800-6807 | http://purl.obolibrary.org/obo/NCBITaxon_9654 | denotes | raccoon |
| T434 | 6849-6850 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T435 | 6856-6862 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T436 | 6895-6901 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T437 | 6934-6940 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T438 | 6957-6958 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T439 | 7018-7023 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T440 | 7180-7183 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T441 | 7260-7261 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T442 | 7371-7374 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T443 | 7471-7476 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T444 | 7501-7502 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T445 | 7569-7576 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T446 | 7615-7618 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T135 | 2663-2670 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T136 | 2885-2895 | Chemical | denotes | inhibitors | http://purl.obolibrary.org/obo/CHEBI_35222 |
| T137 | 3064-3071 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T138 | 3092-3099 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T139 | 3175-3183 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T140 | 3528-3538 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T141 | 3540-3542 | Chemical | denotes | nt | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T142 | 5179-5187 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T143 | 6962-6972 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31876 | 170-182 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
| T89089 | 891-906 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune response |
| T14843 | 998-1014 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
| T4655 | 1110-1118 | http://purl.obolibrary.org/obo/GO_0015297 | denotes | exchange |
| T3696 | 1172-1185 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immune |
| T35146 | 1240-1252 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
| T86468 | 3148-3159 | http://purl.obolibrary.org/obo/GO_0016791 | denotes | phosphatase |
| T29542 | 3483-3495 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
| T18275 | 5598-5610 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T258 | 0-48 | Sentence | denotes | Coronaviruses in Humans—SARS, MERS, and COVID-19 |
| T259 | 49-255 | Sentence | denotes | Coronavirus infection in humans is commonly associated with mild to severe respiratory diseases, with high fever, severe inflammation, cough, and internal organ dysfunction that can even lead to death (92). |
| T260 | 256-325 | Sentence | denotes | Most of the identified coronaviruses cause the common cold in humans. |
| T261 | 326-440 | Sentence | denotes | However, this changed when SARS-CoV was identified, paving the way for severe forms of the disease in humans (22). |
| T262 | 441-664 | Sentence | denotes | Our previous experience with the outbreaks of other coronaviruses, like SARS and MERS, suggests that the mode of transmission in COVID-19 as mainly human-to-human transmission via direct contact, droplets, and fomites (25). |
| T263 | 665-886 | Sentence | denotes | Recent studies have demonstrated that the virus could remain viable for hours in aerosols and up to days on surfaces; thus, aerosol and fomite contamination could play potent roles in the transmission of SARS-CoV-2 (257). |
| T264 | 887-976 | Sentence | denotes | The immune response against coronavirus is vital to control and get rid of the infection. |
| T265 | 977-1119 | Sentence | denotes | However, maladjusted immune responses may contribute to the immunopathology of the disease, resulting in impairment of pulmonary gas exchange. |
| T266 | 1120-1289 | Sentence | denotes | Understanding the interaction between CoVs and host innate immune systems could enlighten our understanding of the lung inflammation associated with this infection (24). |
| T267 | 1290-1510 | Sentence | denotes | SARS is a viral respiratory disease caused by a formerly unrecognized animal CoV that originated from the wet markets in southern China after adapting to the human host, thereby enabling transmission between humans (90). |
| T268 | 1511-1614 | Sentence | denotes | The SARS outbreak reported in 2002 to 2003 had 8,098 confirmed cases with 774 total deaths (9.6%) (93). |
| T269 | 1615-1702 | Sentence | denotes | The outbreak severely affected the Asia Pacific region, especially mainland China (94). |
| T270 | 1703-1924 | Sentence | denotes | Even though the case fatality rate (CFR) of SARS-CoV-2 (COVID-19) is lower than that of SARS-CoV, there exists a severe concern linked to this outbreak due to its epidemiological similarity to influenza viruses (95, 279). |
| T271 | 1925-1994 | Sentence | denotes | This can fail the public health system, resulting in a pandemic (96). |
| T272 | 1995-2092 | Sentence | denotes | MERS is another respiratory disease that was first reported in Saudi Arabia during the year 2012. |
| T273 | 2093-2148 | Sentence | denotes | The disease was found to have a CFR of around 35% (97). |
| T274 | 2149-2287 | Sentence | denotes | The analysis of available data sets suggests that the incubation period of SARS-CoV-2, SARS-CoV, and MERS-CoV is in almost the same range. |
| T275 | 2288-2351 | Sentence | denotes | The longest predicted incubation time of SARS-CoV-2 is 14 days. |
| T276 | 2352-2447 | Sentence | denotes | Hence, suspected individuals are isolated for 14 days to avoid the risk of further spread (98). |
| T277 | 2448-2718 | Sentence | denotes | Even though a high similarity has been reported between the genome sequence of the new coronavirus (SARS-CoV-2) and SARS-like CoVs, the comparative analysis recognized a furin-like cleavage site in the SARS-CoV-2 S protein that is missing from other SARS-like CoVs (99). |
| T278 | 2719-2896 | Sentence | denotes | The furin-like cleavage site is expected to play a role in the life cycle of the virus and disease pathogenicity and might even act as a therapeutic target for furin inhibitors. |
| T279 | 2897-3100 | Sentence | denotes | The highly contagious nature of SARS-CoV-2 compared to that of its predecessors might be the result of a stabilizing mutation that occurred in the endosome-associated-protein-like domain of nsp2 protein. |
| T280 | 3101-3280 | Sentence | denotes | Similarly, the destabilizing mutation near the phosphatase domain of nsp3 proteins in SARS-CoV-2 could indicate a potential mechanism that differentiates it from other CoVs (100). |
| T281 | 3281-3452 | Sentence | denotes | Even though the CFR reported for COVID-19 is meager compared to those of the previous SARS and MERS outbreaks, it has caused more deaths than SARS and MERS combined (101). |
| T282 | 3453-3678 | Sentence | denotes | Possibly related to the viral pathogenesis is the recent finding of an 832-nucleotide (nt) deletion in ORF8, which appears to reduce the replicative fitness of the virus and leads to attenuated phenotypes of SARS-CoV-2 (256). |
| T283 | 3679-3844 | Sentence | denotes | Coronavirus is the most prominent example of a virus that has crossed the species barrier twice from wild animals to humans during SARS and MERS outbreaks (79, 102). |
| T284 | 3845-3973 | Sentence | denotes | The possibility of crossing the species barrier for the third time has also been suspected in the case of SARS-CoV-2 (COVID-19). |
| T285 | 3974-4071 | Sentence | denotes | Bats are recognized as a possible natural reservoir host of both SARS-CoV and MERS-CoV infection. |
| T286 | 4072-4200 | Sentence | denotes | In contrast, the possible intermediary host is the palm civet for SARS-CoV and the dromedary camel for MERS-CoV infection (102). |
| T287 | 4201-4270 | Sentence | denotes | Bats are considered the ancestral hosts for both SARS and MERS (103). |
| T288 | 4271-4373 | Sentence | denotes | Bats are also considered the reservoir host of human coronaviruses like HCoV-229E and HCoV-NL63 (104). |
| T289 | 4374-4572 | Sentence | denotes | In the case of COVID-19, there are two possibilities for primary transmission: it can be transmitted either through intermediate hosts, similar to that of SARS and MERS, or directly from bats (103). |
| T290 | 4573-4836 | Sentence | denotes | The emergence paradigm put forward in the SARS outbreak suggests that SARS-CoV originated from bats (reservoir host) and later jumped to civets (intermediate host) and incorporated changes within the receptor-binding domain (RBD) to improve binding to civet ACE2. |
| T291 | 4837-4995 | Sentence | denotes | This civet-adapted virus, during their subsequent exposure to humans at live markets, promoted further adaptations that resulted in the epidemic strain (104). |
| T292 | 4996-5091 | Sentence | denotes | Transmission can also occur directly from the reservoir host to humans without RBD adaptations. |
| T293 | 5092-5282 | Sentence | denotes | The bat coronavirus that is currently in circulation maintains specific “poised” spike proteins that facilitate human infection without the requirement of any mutations or adaptations (105). |
| T294 | 5283-5384 | Sentence | denotes | Altogether, different species of bats carry a massive number of coronaviruses around the world (106). |
| T295 | 5385-5593 | Sentence | denotes | The high plasticity in receptor usage, along with the feasibility of adaptive mutation and recombination, may result in frequent interspecies transmission of coronavirus from bats to animals and humans (106). |
| T296 | 5594-5707 | Sentence | denotes | The pathogenesis of most bat coronaviruses is unknown, as most of these viruses are not isolated and studied (4). |
| T297 | 5708-5804 | Sentence | denotes | Hedgehog coronavirus HKU31, a Betacoronavirus, has been identified from amur hedgehogs in China. |
| T298 | 5805-5916 | Sentence | denotes | Studies show that hedgehogs are the reservoir of Betacoronavirus, and there is evidence of recombination (107). |
| T299 | 5917-6110 | Sentence | denotes | The current scientific evidence available on MERS infection suggests that the significant reservoir host, as well as the animal source of MERS infection in humans, is the dromedary camels (97). |
| T300 | 6111-6296 | Sentence | denotes | The infected dromedary camels may not show any visible signs of infection, making it challenging to identify animals actively excreting MERS-CoV that has the potential to infect humans. |
| T301 | 6297-6431 | Sentence | denotes | However, they may shed MERS-CoV through milk, urine, feces, and nasal and eye discharge and can also be found in the raw organs (108). |
| T302 | 6432-6674 | Sentence | denotes | In a study conducted to evaluate the susceptibility of animal species to MERS-CoV infection, llamas and pigs were found to be susceptible, indicating the possibility of MERS-CoV circulation in animal species other than dromedary camels (109). |
| T303 | 6675-6890 | Sentence | denotes | Following the outbreak of SARS in China, SARS-CoV-like viruses were isolated from Himalayan palm civets (Paguma larvata) and raccoon dogs (Nyctereutes procyonoides) found in a live-animal market in Guangdong, China. |
| T304 | 6891-7038 | Sentence | denotes | The animal isolates obtained from the live-animal market retained a 29-nucleotide sequence that was not present in most of the human isolates (78). |
| T305 | 7039-7140 | Sentence | denotes | These findings were critical in identifying the possibility of interspecies transmission in SARS-CoV. |
| T306 | 7141-7288 | Sentence | denotes | The higher diversity and prevalence of bat coronaviruses in this region compared to those in previous reports indicate a host/pathogen coevolution. |
| T307 | 7289-7409 | Sentence | denotes | SARS-like coronaviruses also have been found circulating in the Chinese horseshoe bat (Rhinolophus sinicus) populations. |
| T308 | 7410-7636 | Sentence | denotes | The in vitro and in vivo studies carried out on the isolated virus confirmed that there is a potential risk for the reemergence of SARS-CoV infection from the viruses that are currently circulating in the bat population (105). |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T17 | 156-161 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T18 | 184-189 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1039 | 0-13 | Species | denotes | Coronaviruses | Tax:11118 |
| 1040 | 17-23 | Species | denotes | Humans | Tax:9606 |
| 1041 | 40-48 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1060 | 74-80 | Species | denotes | humans | Tax:9606 |
| 1061 | 279-292 | Species | denotes | coronaviruses | Tax:11118 |
| 1062 | 318-324 | Species | denotes | humans | Tax:9606 |
| 1063 | 353-361 | Species | denotes | SARS-CoV | Tax:694009 |
| 1064 | 428-434 | Species | denotes | humans | Tax:9606 |
| 1065 | 493-506 | Species | denotes | coronaviruses | Tax:11118 |
| 1066 | 589-594 | Species | denotes | human | Tax:9606 |
| 1067 | 598-603 | Species | denotes | human | Tax:9606 |
| 1068 | 869-879 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1069 | 49-70 | Disease | denotes | Coronavirus infection | MESH:D018352 |
| 1070 | 124-144 | Disease | denotes | respiratory diseases | MESH:D012140 |
| 1071 | 151-161 | Disease | denotes | high fever | MESH:D005334 |
| 1072 | 170-182 | Disease | denotes | inflammation | MESH:D007249 |
| 1073 | 184-189 | Disease | denotes | cough | MESH:D003371 |
| 1074 | 204-221 | Disease | denotes | organ dysfunction | MESH:D009102 |
| 1075 | 244-249 | Disease | denotes | death | MESH:D003643 |
| 1076 | 310-314 | Disease | denotes | cold | MESH:D000067390 |
| 1077 | 570-578 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1083 | 915-926 | Species | denotes | coronavirus | Tax:11118 |
| 1084 | 1158-1162 | Species | denotes | CoVs | Tax:11118 |
| 1085 | 966-975 | Disease | denotes | infection | MESH:D007239 |
| 1086 | 1235-1252 | Disease | denotes | lung inflammation | MESH:D011014 |
| 1087 | 1274-1283 | Disease | denotes | infection | MESH:D007239 |
| 1099 | 1367-1370 | Species | denotes | CoV | Tax:11118 |
| 1100 | 1448-1453 | Species | denotes | human | Tax:9606 |
| 1101 | 1498-1504 | Species | denotes | humans | Tax:9606 |
| 1102 | 1747-1757 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1103 | 1791-1799 | Species | denotes | SARS-CoV | Tax:694009 |
| 1104 | 1896-1913 | Species | denotes | influenza viruses | Tax:11308 |
| 1105 | 1420-1425 | Species | denotes | China | Tax:998089 |
| 1106 | 1691-1696 | Species | denotes | China | Tax:998089 |
| 1107 | 1300-1325 | Disease | denotes | viral respiratory disease | |
| 1108 | 1595-1601 | Disease | denotes | deaths | MESH:D003643 |
| 1109 | 1759-1767 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1123 | 3087-3091 | Gene | denotes | nsp2 | Gene:6253 |
| 1124 | 2661-2662 | Gene | denotes | S | Gene:43740568 |
| 1125 | 2224-2234 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1126 | 2236-2244 | Species | denotes | SARS-CoV | Tax:694009 |
| 1127 | 2250-2258 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1128 | 2329-2339 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1129 | 2531-2546 | Species | denotes | new coronavirus | Tax:2697049 |
| 1130 | 2548-2558 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1131 | 2574-2578 | Species | denotes | CoVs | Tax:11118 |
| 1132 | 2650-2660 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1133 | 2708-2712 | Species | denotes | CoVs | Tax:11118 |
| 1134 | 2929-2939 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1135 | 2011-2030 | Disease | denotes | respiratory disease | MESH:D012140 |
| 1145 | 3170-3174 | Gene | denotes | nsp3 | Gene:10044 |
| 1146 | 3556-3560 | Gene | denotes | ORF8 | Gene:43740577 |
| 1147 | 3187-3197 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1148 | 3269-3273 | Species | denotes | CoVs | Tax:11118 |
| 1149 | 3661-3671 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1150 | 3524-3538 | Chemical | denotes | 832-nucleotide | |
| 1151 | 3540-3542 | Chemical | denotes | nt | |
| 1152 | 3314-3322 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1153 | 3411-3417 | Disease | denotes | deaths | MESH:D003643 |
| 1178 | 4831-4835 | Gene | denotes | ACE2 | Gene:59272 |
| 1179 | 5173-5178 | Gene | denotes | spike | Gene:43740568 |
| 1180 | 3679-3690 | Species | denotes | Coronavirus | Tax:11118 |
| 1181 | 3796-3802 | Species | denotes | humans | Tax:9606 |
| 1182 | 3951-3961 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1183 | 4039-4047 | Species | denotes | SARS-CoV | Tax:694009 |
| 1184 | 4138-4146 | Species | denotes | SARS-CoV | Tax:694009 |
| 1185 | 4155-4164 | Species | denotes | dromedary | Tax:9838 |
| 1186 | 4165-4170 | Species | denotes | camel | Tax:9838 |
| 1187 | 4318-4323 | Species | denotes | human | Tax:9606 |
| 1188 | 4324-4337 | Species | denotes | coronaviruses | Tax:11118 |
| 1189 | 4343-4352 | Species | denotes | HCoV-229E | Tax:11137 |
| 1190 | 4357-4366 | Species | denotes | HCoV-NL63 | Tax:277944 |
| 1191 | 4643-4651 | Species | denotes | SARS-CoV | Tax:694009 |
| 1192 | 4899-4905 | Species | denotes | humans | Tax:9606 |
| 1193 | 5060-5066 | Species | denotes | humans | Tax:9606 |
| 1194 | 5096-5111 | Species | denotes | bat coronavirus | Tax:1508220 |
| 1195 | 5204-5209 | Species | denotes | human | Tax:9606 |
| 1196 | 5347-5360 | Species | denotes | coronaviruses | Tax:11118 |
| 1197 | 3963-3971 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1198 | 4052-4070 | Disease | denotes | MERS-CoV infection | MESH:D018352 |
| 1199 | 4175-4193 | Disease | denotes | MERS-CoV infection | MESH:D018352 |
| 1200 | 4389-4397 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1201 | 5210-5219 | Disease | denotes | infection | MESH:D007239 |
| 1211 | 5619-5622 | Gene | denotes | bat | Gene:570 |
| 1212 | 5543-5554 | Species | denotes | coronavirus | Tax:11118 |
| 1213 | 5580-5586 | Species | denotes | humans | Tax:9606 |
| 1214 | 5623-5636 | Species | denotes | coronaviruses | Tax:11118 |
| 1215 | 5717-5728 | Species | denotes | coronavirus | Tax:11118 |
| 1216 | 5738-5753 | Species | denotes | Betacoronavirus | Tax:694002 |
| 1217 | 5780-5794 | Species | denotes | amur hedgehogs | Tax:757341 |
| 1218 | 5854-5869 | Species | denotes | Betacoronavirus | Tax:694002 |
| 1219 | 5798-5803 | Species | denotes | China | Tax:998089 |
| 1238 | 6073-6079 | Species | denotes | humans | Tax:9606 |
| 1239 | 6088-6097 | Species | denotes | dromedary | Tax:9838 |
| 1240 | 6098-6104 | Species | denotes | camels | Tax:9838 |
| 1241 | 6124-6133 | Species | denotes | dromedary | Tax:9838 |
| 1242 | 6134-6140 | Species | denotes | camels | Tax:9838 |
| 1243 | 6247-6255 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1244 | 6289-6295 | Species | denotes | humans | Tax:9606 |
| 1245 | 6320-6328 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1246 | 6525-6531 | Species | denotes | llamas | Tax:9844 |
| 1247 | 6536-6540 | Species | denotes | pigs | Tax:9823 |
| 1248 | 6601-6609 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1249 | 6651-6660 | Species | denotes | dromedary | Tax:9838 |
| 1250 | 6661-6667 | Species | denotes | camels | Tax:9838 |
| 1251 | 5967-5976 | Disease | denotes | infection | MESH:D007239 |
| 1252 | 6055-6069 | Disease | denotes | MERS infection | MESH:D018352 |
| 1253 | 6115-6123 | Disease | denotes | infected | MESH:D007239 |
| 1254 | 6175-6184 | Disease | denotes | infection | MESH:D007239 |
| 1255 | 6510-6523 | Disease | denotes | CoV infection | MESH:D018352 |
| 1272 | 7615-7618 | Gene | denotes | bat | Gene:570 |
| 1273 | 7371-7374 | Gene | denotes | bat | Gene:570 |
| 1274 | 7180-7183 | Gene | denotes | bat | Gene:570 |
| 1275 | 6716-6724 | Species | denotes | SARS-CoV | Tax:694009 |
| 1276 | 6780-6794 | Species | denotes | Paguma larvata | Tax:9675 |
| 1277 | 6800-6812 | Species | denotes | raccoon dogs | Tax:34880 |
| 1278 | 6814-6838 | Species | denotes | Nyctereutes procyonoides | Tax:34880 |
| 1279 | 7018-7023 | Species | denotes | human | Tax:9606 |
| 1280 | 7131-7139 | Species | denotes | SARS-CoV | Tax:694009 |
| 1281 | 7184-7197 | Species | denotes | coronaviruses | Tax:11118 |
| 1282 | 7299-7312 | Species | denotes | coronaviruses | Tax:11118 |
| 1283 | 7376-7395 | Species | denotes | Rhinolophus sinicus | Tax:89399 |
| 1284 | 6709-6714 | Species | denotes | China | Tax:998089 |
| 1285 | 6884-6889 | Species | denotes | China | Tax:998089 |
| 1286 | 6959-6972 | Chemical | denotes | 29-nucleotide | |
| 1287 | 7541-7559 | Disease | denotes | SARS-CoV infection | MESH:C000657245 |