PMC:7405836 / 36198-37679
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T57513 | 34-40 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T15658 | 1258-1281 | Body_part | denotes | lower respiratory tract | http://purl.org/sig/ont/fma/fma45662 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T15 | 1258-1281 | Body_part | denotes | lower respiratory tract | http://purl.obolibrary.org/obo/UBERON_0001558 |
| T16 | 1264-1281 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T317 | 54-62 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T318 | 54-58 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T319 | 233-241 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T320 | 233-237 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T321 | 339-347 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T322 | 339-343 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T323 | 518-526 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T324 | 518-522 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T325 | 559-567 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T326 | 559-563 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T327 | 855-859 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T328 | 1135-1143 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T329 | 1214-1218 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T330 | 1229-1237 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T331 | 1343-1351 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T65058 | 109-112 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T41921 | 129-132 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T70614 | 148-151 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T96748 | 192-196 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T18058 | 570-575 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T5219 | 579-584 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T27368 | 1054-1059 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T59314 | 1063-1068 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T72797 | 1258-1281 | http://purl.obolibrary.org/obo/UBERON_0001558 | denotes | lower respiratory tract |
| T13300 | 1305-1307 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T85555 | 1352-1355 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T133 | 133-135 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T134 | 152-154 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T669 | 1320-1332 | http://purl.obolibrary.org/obo/GO_0000003 | denotes | reproduction |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T248 | 0-211 | Sentence | denotes | Phylogenetic analysis of 10 whole-genome sequences of SARS-CoV-2 showed that they are related to two CoVs of bat origin, namely, bat-SL-CoVZC45 and bat-SL-CoVZXC21, which were reported during 2018 in China (17). |
| T249 | 212-367 | Sentence | denotes | It was reported that SARS-CoV-2 had been confirmed to use ACE2 as an entry receptor while exhibiting an RBD similar to that of SARS-CoV (17, 87, 254, 255). |
| T250 | 368-460 | Sentence | denotes | Several countries have provided recommendations to their people traveling to China (88, 89). |
| T251 | 461-621 | Sentence | denotes | Compared to the previous coronavirus outbreaks caused by SARS-CoV and MERS-CoV, the efficiency of SARS-CoV-2 human-to-human transmission was thought to be less. |
| T252 | 622-766 | Sentence | denotes | This assumption was based on the finding that health workers were affected less than they were in previous outbreaks of fatal coronaviruses (2). |
| T253 | 767-878 | Sentence | denotes | Superspreading events are considered the main culprit for the extensive transmission of SARS and MERS (90, 91). |
| T254 | 879-1087 | Sentence | denotes | Almost half of the MERS-CoV cases reported in Saudi Arabia are of secondary origin that occurred through contact with infected asymptomatic or symptomatic individuals through human-to-human transmission (92). |
| T255 | 1088-1208 | Sentence | denotes | The occurrence of superspreading events in the COVID-19 outbreak cannot be ruled out until its possibility is evaluated. |
| T256 | 1209-1309 | Sentence | denotes | Like SARS and MERS, COVID-19 can also infect the lower respiratory tract, with milder symptoms (27). |
| T257 | 1310-1481 | Sentence | denotes | The basic reproduction number of COVID-19 has been found to be in the range of 2.8 to 3.3 based on real-time reports and 3.2 to 3.9 based on predicted infected cases (84). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1010 | 270-274 | Gene | denotes | ACE2 | Gene:59272 |
| 1011 | 148-151 | Gene | denotes | bat | Gene:570 |
| 1012 | 129-132 | Gene | denotes | bat | Gene:570 |
| 1013 | 109-112 | Gene | denotes | bat | Gene:570 |
| 1014 | 54-64 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1015 | 101-105 | Species | denotes | CoVs | Tax:11118 |
| 1016 | 233-243 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1017 | 339-347 | Species | denotes | SARS-CoV | Tax:694009 |
| 1018 | 425-431 | Species | denotes | people | Tax:9606 |
| 1019 | 486-497 | Species | denotes | coronavirus | Tax:11118 |
| 1020 | 518-526 | Species | denotes | SARS-CoV | Tax:694009 |
| 1021 | 531-539 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1022 | 559-569 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1023 | 570-575 | Species | denotes | human | Tax:9606 |
| 1024 | 579-584 | Species | denotes | human | Tax:9606 |
| 1025 | 748-761 | Species | denotes | coronaviruses | Tax:11118 |
| 1026 | 898-906 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1027 | 1054-1059 | Species | denotes | human | Tax:9606 |
| 1028 | 1063-1068 | Species | denotes | human | Tax:9606 |
| 1029 | 200-205 | Species | denotes | China | Tax:998089 |
| 1030 | 445-450 | Species | denotes | China | Tax:998089 |
| 1031 | 997-1005 | Disease | denotes | infected | MESH:D007239 |
| 1032 | 1135-1143 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1033 | 1229-1237 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1034 | 1343-1351 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1035 | 1461-1469 | Disease | denotes | infected | MESH:D007239 |