PMC:7405836 / 21711-22626 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T29957","span":{"begin":111,"end":118},"obj":"Body_part"}],"attributes":[{"id":"A99683","pred":"fma_id","subj":"T29957","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"SplitsTree phylogeny analysis.\nIn the unrooted phylogenetic tree of different betacoronaviruses based on the S protein, virus sequences from different subgenera grouped into separate clusters. SARS-CoV-2 sequences from Wuhan and other countries exhibited a close relationship and appeared in a single cluster (Fig. 1). The CoVs from the subgenus Sarbecovirus appeared jointly in SplitsTree and divided into three subclusters, namely, SARS-CoV-2, bat-SARS-like-CoV (bat-SL-CoV), and SARS-CoV (Fig. 1). In the case of other subgenera, like Merbecovirus, all of the sequences grouped in a single cluster, whereas in Embecovirus, different species, comprised of canine respiratory CoVs, bovine CoVs, equine CoVs, and human CoV strain (OC43), grouped in a common cluster. Isolates in the subgenera Nobecovorus and Hibecovirus were found to be placed separately away from other reported SARS-CoVs but shared a bat origin."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T199","span":{"begin":193,"end":201},"obj":"Disease"},{"id":"T200","span":{"begin":193,"end":197},"obj":"Disease"},{"id":"T201","span":{"begin":434,"end":442},"obj":"Disease"},{"id":"T202","span":{"begin":434,"end":438},"obj":"Disease"},{"id":"T203","span":{"begin":450,"end":454},"obj":"Disease"},{"id":"T204","span":{"begin":482,"end":490},"obj":"Disease"},{"id":"T205","span":{"begin":482,"end":486},"obj":"Disease"},{"id":"T206","span":{"begin":881,"end":885},"obj":"Disease"}],"attributes":[{"id":"A199","pred":"mondo_id","subj":"T199","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A200","pred":"mondo_id","subj":"T200","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A201","pred":"mondo_id","subj":"T201","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A202","pred":"mondo_id","subj":"T202","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A203","pred":"mondo_id","subj":"T203","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A204","pred":"mondo_id","subj":"T204","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A205","pred":"mondo_id","subj":"T205","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A206","pred":"mondo_id","subj":"T206","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"SplitsTree phylogeny analysis.\nIn the unrooted phylogenetic tree of different betacoronaviruses based on the S protein, virus sequences from different subgenera grouped into separate clusters. SARS-CoV-2 sequences from Wuhan and other countries exhibited a close relationship and appeared in a single cluster (Fig. 1). The CoVs from the subgenus Sarbecovirus appeared jointly in SplitsTree and divided into three subclusters, namely, SARS-CoV-2, bat-SARS-like-CoV (bat-SL-CoV), and SARS-CoV (Fig. 1). In the case of other subgenera, like Merbecovirus, all of the sequences grouped in a single cluster, whereas in Embecovirus, different species, comprised of canine respiratory CoVs, bovine CoVs, equine CoVs, and human CoV strain (OC43), grouped in a common cluster. Isolates in the subgenera Nobecovorus and Hibecovirus were found to be placed separately away from other reported SARS-CoVs but shared a bat origin."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T38832","span":{"begin":120,"end":125},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T40021","span":{"begin":255,"end":256},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1642","span":{"begin":292,"end":293},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T41371","span":{"begin":368,"end":375},"obj":"http://purl.obolibrary.org/obo/UBERON_0000982"},{"id":"T81447","span":{"begin":368,"end":375},"obj":"http://purl.obolibrary.org/obo/UBERON_0004905"},{"id":"T30367","span":{"begin":446,"end":449},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T50486","span":{"begin":465,"end":468},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T74741","span":{"begin":584,"end":585},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T94159","span":{"begin":696,"end":702},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9796"},{"id":"T22104","span":{"begin":713,"end":718},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T51739","span":{"begin":749,"end":750},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T22238","span":{"begin":902,"end":903},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T23524","span":{"begin":904,"end":907},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"}],"text":"SplitsTree phylogeny analysis.\nIn the unrooted phylogenetic tree of different betacoronaviruses based on the S protein, virus sequences from different subgenera grouped into separate clusters. SARS-CoV-2 sequences from Wuhan and other countries exhibited a close relationship and appeared in a single cluster (Fig. 1). The CoVs from the subgenus Sarbecovirus appeared jointly in SplitsTree and divided into three subclusters, namely, SARS-CoV-2, bat-SARS-like-CoV (bat-SL-CoV), and SARS-CoV (Fig. 1). In the case of other subgenera, like Merbecovirus, all of the sequences grouped in a single cluster, whereas in Embecovirus, different species, comprised of canine respiratory CoVs, bovine CoVs, equine CoVs, and human CoV strain (OC43), grouped in a common cluster. Isolates in the subgenera Nobecovorus and Hibecovirus were found to be placed separately away from other reported SARS-CoVs but shared a bat origin."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T127","span":{"begin":111,"end":118},"obj":"Chemical"},{"id":"T128","span":{"begin":469,"end":471},"obj":"Chemical"}],"attributes":[{"id":"A127","pred":"chebi_id","subj":"T127","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A128","pred":"chebi_id","subj":"T128","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"}],"text":"SplitsTree phylogeny analysis.\nIn the unrooted phylogenetic tree of different betacoronaviruses based on the S protein, virus sequences from different subgenera grouped into separate clusters. SARS-CoV-2 sequences from Wuhan and other countries exhibited a close relationship and appeared in a single cluster (Fig. 1). The CoVs from the subgenus Sarbecovirus appeared jointly in SplitsTree and divided into three subclusters, namely, SARS-CoV-2, bat-SARS-like-CoV (bat-SL-CoV), and SARS-CoV (Fig. 1). In the case of other subgenera, like Merbecovirus, all of the sequences grouped in a single cluster, whereas in Embecovirus, different species, comprised of canine respiratory CoVs, bovine CoVs, equine CoVs, and human CoV strain (OC43), grouped in a common cluster. Isolates in the subgenera Nobecovorus and Hibecovirus were found to be placed separately away from other reported SARS-CoVs but shared a bat origin."}

{"project":"LitCovid-sentences","denotations":[{"id":"T155","span":{"begin":0,"end":30},"obj":"Sentence"},{"id":"T156","span":{"begin":31,"end":192},"obj":"Sentence"},{"id":"T157","span":{"begin":193,"end":318},"obj":"Sentence"},{"id":"T158","span":{"begin":319,"end":500},"obj":"Sentence"},{"id":"T159","span":{"begin":501,"end":766},"obj":"Sentence"},{"id":"T160","span":{"begin":767,"end":915},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"SplitsTree phylogeny analysis.\nIn the unrooted phylogenetic tree of different betacoronaviruses based on the S protein, virus sequences from different subgenera grouped into separate clusters. SARS-CoV-2 sequences from Wuhan and other countries exhibited a close relationship and appeared in a single cluster (Fig. 1). The CoVs from the subgenus Sarbecovirus appeared jointly in SplitsTree and divided into three subclusters, namely, SARS-CoV-2, bat-SARS-like-CoV (bat-SL-CoV), and SARS-CoV (Fig. 1). In the case of other subgenera, like Merbecovirus, all of the sequences grouped in a single cluster, whereas in Embecovirus, different species, comprised of canine respiratory CoVs, bovine CoVs, equine CoVs, and human CoV strain (OC43), grouped in a common cluster. Isolates in the subgenera Nobecovorus and Hibecovirus were found to be placed separately away from other reported SARS-CoVs but shared a bat origin."}

{"project":"LitCovid-PubTator","denotations":[{"id":"637","span":{"begin":904,"end":907},"obj":"Gene"},{"id":"638","span":{"begin":465,"end":468},"obj":"Gene"},{"id":"639","span":{"begin":446,"end":449},"obj":"Gene"},{"id":"640","span":{"begin":78,"end":95},"obj":"Species"},{"id":"641","span":{"begin":193,"end":203},"obj":"Species"},{"id":"642","span":{"begin":301,"end":313},"obj":"Species"},{"id":"643","span":{"begin":323,"end":327},"obj":"Species"},{"id":"644","span":{"begin":434,"end":444},"obj":"Species"},{"id":"645","span":{"begin":460,"end":463},"obj":"Species"},{"id":"646","span":{"begin":472,"end":475},"obj":"Species"},{"id":"647","span":{"begin":482,"end":490},"obj":"Species"},{"id":"648","span":{"begin":658,"end":664},"obj":"Species"},{"id":"649","span":{"begin":677,"end":681},"obj":"Species"},{"id":"650","span":{"begin":683,"end":689},"obj":"Species"},{"id":"651","span":{"begin":690,"end":694},"obj":"Species"},{"id":"652","span":{"begin":696,"end":702},"obj":"Species"},{"id":"653","span":{"begin":703,"end":707},"obj":"Species"},{"id":"654","span":{"begin":713,"end":718},"obj":"Species"},{"id":"655","span":{"begin":719,"end":722},"obj":"Species"},{"id":"656","span":{"begin":881,"end":890},"obj":"Species"},{"id":"657","span":{"begin":593,"end":600},"obj":"Species"},{"id":"658","span":{"begin":758,"end":765},"obj":"Species"},{"id":"659","span":{"begin":731,"end":735},"obj":"Species"}],"attributes":[{"id":"A637","pred":"tao:has_database_id","subj":"637","obj":"Gene:570"},{"id":"A638","pred":"tao:has_database_id","subj":"638","obj":"Gene:570"},{"id":"A639","pred":"tao:has_database_id","subj":"639","obj":"Gene:570"},{"id":"A640","pred":"tao:has_database_id","subj":"640","obj":"Tax:694002"},{"id":"A641","pred":"tao:has_database_id","subj":"641","obj":"Tax:2697049"},{"id":"A642","pred":"tao:has_database_id","subj":"642","obj":"Tax:100569"},{"id":"A643","pred":"tao:has_database_id","subj":"643","obj":"Tax:11118"},{"id":"A644","pred":"tao:has_database_id","subj":"644","obj":"Tax:2697049"},{"id":"A645","pred":"tao:has_database_id","subj":"645","obj":"Tax:11118"},{"id":"A646","pred":"tao:has_database_id","subj":"646","obj":"Tax:11118"},{"id":"A647","pred":"tao:has_database_id","subj":"647","obj":"Tax:694009"},{"id":"A648","pred":"tao:has_database_id","subj":"648","obj":"Tax:9615"},{"id":"A649","pred":"tao:has_database_id","subj":"649","obj":"Tax:11118"},{"id":"A650","pred":"tao:has_database_id","subj":"650","obj":"Tax:9913"},{"id":"A651","pred":"tao:has_database_id","subj":"651","obj":"Tax:11118"},{"id":"A652","pred":"tao:has_database_id","subj":"652","obj":"Tax:9796"},{"id":"A653","pred":"tao:has_database_id","subj":"653","obj":"Tax:11118"},{"id":"A654","pred":"tao:has_database_id","subj":"654","obj":"Tax:9606"},{"id":"A655","pred":"tao:has_database_id","subj":"655","obj":"Tax:11118"},{"id":"A656","pred":"tao:has_database_id","subj":"656","obj":"Tax:694009"},{"id":"A657","pred":"tao:has_database_id","subj":"657","obj":"Tax:100569"},{"id":"A658","pred":"tao:has_database_id","subj":"658","obj":"Tax:100569"},{"id":"A659","pred":"tao:has_database_id","subj":"659","obj":"Tax:31631"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"SplitsTree phylogeny analysis.\nIn the unrooted phylogenetic tree of different betacoronaviruses based on the S protein, virus sequences from different subgenera grouped into separate clusters. SARS-CoV-2 sequences from Wuhan and other countries exhibited a close relationship and appeared in a single cluster (Fig. 1). The CoVs from the subgenus Sarbecovirus appeared jointly in SplitsTree and divided into three subclusters, namely, SARS-CoV-2, bat-SARS-like-CoV (bat-SL-CoV), and SARS-CoV (Fig. 1). In the case of other subgenera, like Merbecovirus, all of the sequences grouped in a single cluster, whereas in Embecovirus, different species, comprised of canine respiratory CoVs, bovine CoVs, equine CoVs, and human CoV strain (OC43), grouped in a common cluster. Isolates in the subgenera Nobecovorus and Hibecovirus were found to be placed separately away from other reported SARS-CoVs but shared a bat origin."}