PMC:7405836 / 20382-21709
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T60900 | 54-64 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T37693 | 342-352 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T55073 | 494-504 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T3191 | 525-535 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T188 | 160-168 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T189 | 160-164 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T190 | 269-277 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T191 | 269-273 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T192 | 431-435 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T193 | 476-484 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T194 | 476-480 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T195 | 822-830 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T196 | 822-826 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T197 | 1078-1086 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T198 | 1078-1082 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T62091 | 325-328 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T91591 | 793-794 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T79207 | 846-849 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T70060 | 869-870 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T23742 | 1229-1232 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T96383 | 1254-1258 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T48063 | 1277-1278 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T27036 | 1319-1326 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T121 | 54-64 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T122 | 329-331 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T123 | 342-352 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T124 | 494-504 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T125 | 525-535 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T126 | 850-852 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T147 | 0-37 | Sentence | denotes | Sequence percent similarity analysis. |
| T148 | 38-214 | Sentence | denotes | We assessed the nucleotide percent similarity using the MegAlign software program, where the similarity between the novel SARS-CoV-2 isolates was in the range of 99.4% to 100%. |
| T149 | 215-402 | Sentence | denotes | Among the other Serbecovirus CoV sequences, the novel SARS-CoV-2 sequences revealed the highest similarity to bat-SL-CoV, with nucleotide percent identity ranges between 88.12 and 89.65%. |
| T150 | 403-511 | Sentence | denotes | Meanwhile, earlier reported SARS-CoVs showed 70.6 to 74.9% similarity to SARS-CoV-2 at the nucleotide level. |
| T151 | 512-724 | Sentence | denotes | Further, the nucleotide percent similarity was 55.4%, 45.5% to 47.9%, 46.2% to 46.6%, and 45.0% to 46.3% to the other four subgenera, namely, Hibecovirus, Nobecovirus, Merbecovirus, and Embecovirus, respectively. |
| T152 | 725-885 | Sentence | denotes | The percent similarity index of current outbreak isolates indicates a close relationship between SARS-CoV-2 isolates and bat-SL-CoV, indicating a common origin. |
| T153 | 886-1176 | Sentence | denotes | However, particular pieces of evidence based on further complete genomic analysis of current isolates are necessary to draw any conclusions, although it was ascertained that the current novel SARS-CoV-2 isolates belong to the subgenus Sarbecovirus in the diverse range of betacoronaviruses. |
| T154 | 1177-1327 | Sentence | denotes | Their possible ancestor was hypothesized to be from bat CoV strains, wherein bats might have played a crucial role in harboring this class of viruses. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 600 | 1229-1232 | Gene | denotes | bat | Gene:570 |
| 601 | 846-849 | Gene | denotes | bat | Gene:570 |
| 602 | 325-328 | Gene | denotes | bat | Gene:570 |
| 603 | 160-170 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 604 | 244-247 | Species | denotes | CoV | Tax:11118 |
| 605 | 269-279 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 606 | 332-335 | Species | denotes | CoV | Tax:11118 |
| 607 | 431-440 | Species | denotes | SARS-CoVs | Tax:694009 |
| 608 | 476-486 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 609 | 822-832 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 610 | 853-856 | Species | denotes | CoV | Tax:11118 |
| 611 | 1078-1088 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 612 | 1158-1175 | Species | denotes | betacoronaviruses | Tax:694002 |
| 613 | 1233-1236 | Species | denotes | CoV | Tax:11118 |