PMC:7405836 / 18480-19648
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T92154 | 2-9 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
| T13665 | 16-23 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T82837 | 133-139 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T92091 | 155-162 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T46746 | 347-350 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T31431 | 451-457 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T26009 | 575-581 | Body_part | denotes | serine | http://purl.org/sig/ont/fma/fma82764 |
| T86388 | 586-594 | Body_part | denotes | arginine | http://purl.org/sig/ont/fma/fma82763 |
| T64065 | 629-635 | Body_part | denotes | serine | http://purl.org/sig/ont/fma/fma82764 |
| T38101 | 640-648 | Body_part | denotes | arginine | http://purl.org/sig/ont/fma/fma82763 |
| T98601 | 718-721 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T63939 | 757-761 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T65258 | 888-891 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T26171 | 947-954 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T21006 | 982-992 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T166 | 339-342 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T168 | 412-415 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T170 | 931-939 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T171 | 931-935 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T172 | 958-966 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T173 | 958-962 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T174 | 1100-1103 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T81401 | 90-91 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T90573 | 255-260 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T13118 | 369-370 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T74119 | 396-397 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T77281 | 625-627 | http://purl.obolibrary.org/obo/CLO_0009126 | denotes | SR |
| T2595 | 757-761 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T61322 | 762-771 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T91 | 2-9 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T92 | 16-23 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T93 | 155-162 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T94 | 575-581 | Chemical | denotes | serine | http://purl.obolibrary.org/obo/CHEBI_17822 |
| T95 | 586-594 | Chemical | denotes | arginine | http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_29016|http://purl.obolibrary.org/obo/CHEBI_32696 |
| T98 | 629-635 | Chemical | denotes | serine | http://purl.obolibrary.org/obo/CHEBI_17822 |
| T99 | 640-648 | Chemical | denotes | arginine | http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_29016|http://purl.obolibrary.org/obo/CHEBI_32696 |
| T102 | 804-813 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
| T103 | 852-862 | Chemical | denotes | antagonist | http://purl.obolibrary.org/obo/CHEBI_48706 |
| T104 | 867-877 | Chemical | denotes | interferon | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T105 | 879-882 | Chemical | denotes | IFN | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T106 | 947-954 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T107 | 982-992 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T108 | 982-987 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T109 | 988-992 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6706 | 108-117 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
| T85138 | 189-204 | http://purl.obolibrary.org/obo/GO_0019068 | denotes | virion assembly |
| T63681 | 223-236 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T76650 | 762-771 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T96883 | 804-822 | http://purl.obolibrary.org/obo/GO_0051607 | denotes | antiviral response |
| T60457 | 888-904 | http://purl.obolibrary.org/obo/GO_0016246 | denotes | RNA interference |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T130 | 0-9 | Sentence | denotes | N Protein |
| T131 | 10-55 | Sentence | denotes | The N protein of coronavirus is multipurpose. |
| T132 | 56-270 | Sentence | denotes | Among several functions, it plays a role in complex formation with the viral genome, facilitates M protein interaction needed during virion assembly, and enhances the transcription efficiency of the virus (55, 56). |
| T133 | 271-407 | Sentence | denotes | It contains three highly conserved and distinct domains, namely, an NTD, an RNA-binding domain or a linker region (LKR), and a CTD (57). |
| T134 | 408-555 | Sentence | denotes | The NTD binds with the 3′ end of the viral genome, perhaps via electrostatic interactions, and is highly diverged both in length and sequence (58). |
| T135 | 556-662 | Sentence | denotes | The charged LKR is serine and arginine rich and is also known as the SR (serine and arginine) domain (59). |
| T136 | 663-781 | Sentence | denotes | The LKR is capable of direct interaction with in vitro RNA interaction and is responsible for cell signaling (60, 61). |
| T137 | 782-910 | Sentence | denotes | It also modulates the antiviral response of the host by working as an antagonist for interferon (IFN) and RNA interference (62). |
| T138 | 911-1168 | Sentence | denotes | Compared to that of SARS-CoV, the N protein of SARS-CoV-2 possess five amino acid mutations, where two are in the intrinsically dispersed region (IDR; positions 25 and 26), one each in the NTD (position 103), LKR (position 217), and CTD (position 334) (16). |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 551 | 0-1 | Gene | denotes | N | Gene:43740575 |
| 561 | 153-154 | Gene | denotes | M | Gene:43740571 |
| 562 | 27-38 | Species | denotes | coronavirus | Tax:11118 |
| 563 | 931-939 | Species | denotes | SARS-CoV | Tax:694009 |
| 564 | 958-968 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 565 | 575-581 | Chemical | denotes | serine | MESH:D012694 |
| 566 | 586-594 | Chemical | denotes | arginine | MESH:D001120 |
| 567 | 625-627 | Chemical | denotes | SR | MESH:D013324 |
| 568 | 629-635 | Chemical | denotes | serine | MESH:D012694 |
| 569 | 640-648 | Chemical | denotes | arginine | MESH:D001120 |