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PMC:7405836 / 12149-13451 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T17186 431-441 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T4307 858-874 Body_part denotes structural genes http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T119 37-45 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T120 37-41 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T121 188-192 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T122 241-249 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T123 241-245 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T124 472-480 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T125 472-476 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T126 500-508 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T127 500-504 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T128 554-558 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T129 645-653 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T130 645-649 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T131 666-674 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T132 666-670 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T133 690-698 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T134 690-694 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T135 812-820 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T136 812-816 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T137 894-902 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T138 894-898 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T139 922-926 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T140 951-959 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T141 951-955 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T142 1147-1151 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T143 1219-1223 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T55965 62-63 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82265 128-129 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T8748 158-165 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T22810 270-271 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93066 281-286 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T53444 377-378 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T16126 386-387 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T52861 575-579 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T50725 588-590 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T29361 619-622 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T18080 660-665 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T54872 684-689 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T85624 715-716 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T67299 869-874 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T65625 918-921 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T5893 989-993 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T34134 1041-1042 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69248 1075-1081 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T25458 1186-1190 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T92446 1248-1254 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camels
T2505 1298-1300 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T26 431-441 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T27 1240-1243 Chemical denotes cat http://purl.obolibrary.org/obo/CHEBI_32402

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T77 0-127 Sentence denotes Based on molecular characterization, SARS-CoV-2 is considered a new Betacoronavirus belonging to the subgenus Sarbecovirus (3).
T78 128-231 Sentence denotes A few other critical zoonotic viruses (MERS-related CoV and SARS-related CoV) belong to the same genus.
T79 232-415 Sentence denotes However, SARS-CoV-2 was identified as a distinct virus based on the percent identity with other Betacoronavirus; conserved open reading frame 1a/b (ORF1a/b) is below 90% identity (3).
T80 416-592 Sentence denotes An overall 80% nucleotide identity was observed between SARS-CoV-2 and the original SARS-CoV, along with 89% identity with ZC45 and ZXC21 SARS-related CoVs of bats (2, 31, 36).
T81 593-714 Sentence denotes In addition, 82% identity has been observed between SARS-CoV-2 and human SARS-CoV Tor2 and human SARS-CoV BJ01 2003 (31).
T82 715-828 Sentence denotes A sequence identity of only 51.8% was observed between MERS-related CoV and the recently emerged SARS-CoV-2 (37).
T83 829-939 Sentence denotes Phylogenetic analysis of the structural genes also revealed that SARS-CoV-2 is closer to bat SARS-related CoV.
T84 940-1087 Sentence denotes Therefore, SARS-CoV-2 might have originated from bats, while other amplifier hosts might have played a role in disease transmission to humans (31).
T85 1088-1200 Sentence denotes Of note, the other two zoonotic CoVs (MERS-related CoV and SARS-related CoV) also originated from bats (38, 39).
T86 1201-1302 Sentence denotes Nevertheless, for SARS and MERS, civet cat and camels, respectively, act as amplifier hosts (40, 41).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
412 355-378 Gene denotes open reading frame 1a/b
413 380-387 Gene denotes ORF1a/b Gene:43740578
414 918-921 Gene denotes bat Gene:570
415 37-47 Species denotes SARS-CoV-2 Tax:2697049
416 68-83 Species denotes Betacoronavirus Tax:694002
417 180-183 Species denotes CoV Tax:11118
418 188-204 Species denotes SARS-related CoV Tax:694009
419 241-251 Species denotes SARS-CoV-2 Tax:2697049
420 328-343 Species denotes Betacoronavirus Tax:694002
421 472-482 Species denotes SARS-CoV-2 Tax:2697049
422 500-508 Species denotes SARS-CoV Tax:694009
423 554-571 Species denotes SARS-related CoVs Tax:694009
424 645-655 Species denotes SARS-CoV-2 Tax:2697049
425 660-665 Species denotes human Tax:9606
426 666-674 Species denotes SARS-CoV Tax:694009
427 684-689 Species denotes human Tax:9606
428 690-698 Species denotes SARS-CoV Tax:694009
429 783-786 Species denotes CoV Tax:11118
430 812-822 Species denotes SARS-CoV-2 Tax:2697049
431 894-904 Species denotes SARS-CoV-2 Tax:2697049
432 922-938 Species denotes SARS-related CoV Tax:694009
433 951-961 Species denotes SARS-CoV-2 Tax:2697049
434 1075-1081 Species denotes humans Tax:9606
435 1120-1124 Species denotes CoVs Tax:11118
436 1139-1142 Species denotes CoV Tax:11118
437 1147-1163 Species denotes SARS-related CoV Tax:694009
438 1248-1254 Species denotes camels Tax:9838
439 675-679 Species denotes Tor2 Tax:227984
440 149-165 Disease denotes zoonotic viruses MESH:D015047
441 1111-1119 Disease denotes zoonotic MESH:D015047