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PMC:7402624 / 8061-9115 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T35 136-143 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 342-350 Body_part denotes troponin http://purl.org/sig/ont/fma/fma62338
T37 603-619 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T38 615-619 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T39 664-673 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T40 970-978 Body_part denotes monocyte http://purl.org/sig/ont/fma/fma62864
T41 980-990 Body_part denotes eosinophil http://purl.org/sig/ont/fma/fma62861
T42 996-1004 Body_part denotes basophil http://purl.org/sig/ont/fma/fma62862

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 609-614 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
243 125-143 Gene denotes C reactive protein Gene:1401
244 145-148 Gene denotes CRP Gene:1401
245 456-460 Gene denotes IL-6 Gene:3569
246 932-938 Gene denotes ALC <1 Gene:9557
247 40-48 Species denotes patients Tax:9606
248 298-306 Species denotes patients Tax:9606
249 388-396 Species denotes patients Tax:9606
250 424-432 Species denotes patients Tax:9606
251 485-493 Species denotes patients Tax:9606
252 520-528 Species denotes patients Tax:9606
253 558-566 Species denotes patients Tax:9606
254 711-719 Species denotes patients Tax:9606
255 743-751 Species denotes patients Tax:9606
256 894-902 Species denotes patients Tax:9606
257 31-39 Disease denotes COVID-19 MESH:C000657245
258 60-68 Disease denotes COVID-19 MESH:C000657245
259 289-297 Disease denotes COVID-19 MESH:C000657245
260 702-710 Disease denotes COVID-19 MESH:C000657245
261 885-893 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T65 31-39 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T66 60-68 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 289-297 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 702-710 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 885-893 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T88 3-6 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T89 91-92 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 412-413 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 535-537 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T92 575-577 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T93 609-614 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T94 615-619 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T95 731-732 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T96 822-823 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 970-978 http://purl.obolibrary.org/obo/CL_0000576 denotes monocyte

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T26 136-143 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T27 456-458 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T56 0-124 Sentence denotes As has been reported for other COVID-19 patients (31), this COVID-19 cohort presented with a clinical inflammatory syndrome.
T57 125-330 Sentence denotes C reactive protein (CRP) was elevated in over 90% of subjects and LDH and D-dimer were increased in the vast majority, whereas ferritin was above normal in ~75% of COVID-19 patients (Fig. 1B and fig. S1B).
T58 331-408 Sentence denotes Similarly, troponin and NT-proBNP were increased in some patients (fig. S1B).
T59 409-593 Sentence denotes In a subset of patients where it was measured, IL-6 levels were normal in 5 patients, moderately elevated in 5 patients (6-20 pg/ml), and high in 31 patients (21-738 pg/ml) (fig. S1B).
T60 594-730 Sentence denotes Although white blood cell counts (WBC) were mostly normal, individual leukocyte populations were altered in COVID-19 patients (Fig. 1B).
T61 731-845 Sentence denotes A subset of patients had high PMN counts (fig. S1B) as described previously (8, 32) and in a companion study (33).
T62 846-956 Sentence denotes Furthermore, approximately half of the COVID-19 patients were clinically lymphopenic (ALC <1 THO/ul, Fig. 1B).
T63 957-1054 Sentence denotes In contrast, monocyte, eosinophil, and basophil counts were mostly normal (Fig. 1B and fig. S1B).

2_test

Id Subject Object Predicate Lexical cue
32669297-32346093-135105194 50-52 32346093 denotes 31
32669297-32161940-135105195 808-809 32161940 denotes 8
32669297-32242950-135105196 811-813 32242950 denotes 32