PMC:7402624 / 8061-9115
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T35 | 136-143 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T36 | 342-350 | Body_part | denotes | troponin | http://purl.org/sig/ont/fma/fma62338 |
T37 | 603-619 | Body_part | denotes | white blood cell | http://purl.org/sig/ont/fma/fma62852 |
T38 | 615-619 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T39 | 664-673 | Body_part | denotes | leukocyte | http://purl.org/sig/ont/fma/fma62852 |
T40 | 970-978 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
T41 | 980-990 | Body_part | denotes | eosinophil | http://purl.org/sig/ont/fma/fma62861 |
T42 | 996-1004 | Body_part | denotes | basophil | http://purl.org/sig/ont/fma/fma62862 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T5 | 609-614 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
243 | 125-143 | Gene | denotes | C reactive protein | Gene:1401 |
244 | 145-148 | Gene | denotes | CRP | Gene:1401 |
245 | 456-460 | Gene | denotes | IL-6 | Gene:3569 |
246 | 932-938 | Gene | denotes | ALC <1 | Gene:9557 |
247 | 40-48 | Species | denotes | patients | Tax:9606 |
248 | 298-306 | Species | denotes | patients | Tax:9606 |
249 | 388-396 | Species | denotes | patients | Tax:9606 |
250 | 424-432 | Species | denotes | patients | Tax:9606 |
251 | 485-493 | Species | denotes | patients | Tax:9606 |
252 | 520-528 | Species | denotes | patients | Tax:9606 |
253 | 558-566 | Species | denotes | patients | Tax:9606 |
254 | 711-719 | Species | denotes | patients | Tax:9606 |
255 | 743-751 | Species | denotes | patients | Tax:9606 |
256 | 894-902 | Species | denotes | patients | Tax:9606 |
257 | 31-39 | Disease | denotes | COVID-19 | MESH:C000657245 |
258 | 60-68 | Disease | denotes | COVID-19 | MESH:C000657245 |
259 | 289-297 | Disease | denotes | COVID-19 | MESH:C000657245 |
260 | 702-710 | Disease | denotes | COVID-19 | MESH:C000657245 |
261 | 885-893 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T65 | 31-39 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T66 | 60-68 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T67 | 289-297 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T68 | 702-710 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T69 | 885-893 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T88 | 3-6 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T89 | 91-92 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T90 | 412-413 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T91 | 535-537 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
T92 | 575-577 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
T93 | 609-614 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T94 | 615-619 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T95 | 731-732 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T96 | 822-823 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T97 | 970-978 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T26 | 136-143 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T27 | 456-458 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T56 | 0-124 | Sentence | denotes | As has been reported for other COVID-19 patients (31), this COVID-19 cohort presented with a clinical inflammatory syndrome. |
T57 | 125-330 | Sentence | denotes | C reactive protein (CRP) was elevated in over 90% of subjects and LDH and D-dimer were increased in the vast majority, whereas ferritin was above normal in ~75% of COVID-19 patients (Fig. 1B and fig. S1B). |
T58 | 331-408 | Sentence | denotes | Similarly, troponin and NT-proBNP were increased in some patients (fig. S1B). |
T59 | 409-593 | Sentence | denotes | In a subset of patients where it was measured, IL-6 levels were normal in 5 patients, moderately elevated in 5 patients (6-20 pg/ml), and high in 31 patients (21-738 pg/ml) (fig. S1B). |
T60 | 594-730 | Sentence | denotes | Although white blood cell counts (WBC) were mostly normal, individual leukocyte populations were altered in COVID-19 patients (Fig. 1B). |
T61 | 731-845 | Sentence | denotes | A subset of patients had high PMN counts (fig. S1B) as described previously (8, 32) and in a companion study (33). |
T62 | 846-956 | Sentence | denotes | Furthermore, approximately half of the COVID-19 patients were clinically lymphopenic (ALC <1 THO/ul, Fig. 1B). |
T63 | 957-1054 | Sentence | denotes | In contrast, monocyte, eosinophil, and basophil counts were mostly normal (Fig. 1B and fig. S1B). |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32669297-32346093-135105194 | 50-52 | 32346093 | denotes | 31 |
32669297-32161940-135105195 | 808-809 | 32161940 | denotes | 8 |
32669297-32242950-135105196 | 811-813 | 32242950 | denotes | 32 |