PMC:7402624 / 75188-75599
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T554 | 196-198 | Body_part | denotes | PB | http://purl.org/sig/ont/fma/fma84371 |
| T555 | 209-214 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T556 | 246-251 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T557 | 283-288 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T558 | 290-293 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T559 | 327-332 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T560 | 334-337 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T561 | 371-376 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 2182 | 240-243 | Gene | denotes | CD4 | Gene:920 |
| 2183 | 277-280 | Gene | denotes | CD8 | Gene:925 |
| 2184 | 297-301 | Gene | denotes | CD38 | Gene:952 |
| 2185 | 321-324 | Gene | denotes | CD4 | Gene:920 |
| 2186 | 341-345 | Gene | denotes | CD38 | Gene:952 |
| 2187 | 365-368 | Gene | denotes | CD8 | Gene:925 |
| 2188 | 46-54 | Species | denotes | patients | Tax:9606 |
| 2189 | 37-45 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T440 | 37-45 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T441 | 196-198 | Disease | denotes | PB | http://purl.obolibrary.org/obo/MONDO_0019035 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1058 | 207-214 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
| T1059 | 234-251 | http://purl.obolibrary.org/obo/CL_0000895 | denotes | naïve CD4 T cells |
| T1060 | 277-280 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
| T1061 | 281-288 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T1062 | 297-301 | http://purl.obolibrary.org/obo/PR_000001408 | denotes | CD38 |
| T1063 | 315-332 | http://purl.obolibrary.org/obo/CL_0000895 | denotes | naïve CD4 T cells |
| T1064 | 341-345 | http://purl.obolibrary.org/obo/PR_000001408 | denotes | CD38 |
| T1065 | 365-368 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
| T1066 | 369-376 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T84888 | 196-198 | Chemical | denotes | PB | http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686 |
| T53019 | 294-296 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
| T74745 | 338-340 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T136 | 74-90 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T465 | 0-26 | Sentence | denotes | Definition of immunotype 3 |
| T466 | 27-411 | Sentence | denotes | To define COVID-19 patients with low or absent immune responses, classified as immunotype 3, the intersection of the bottom 50% of 5 different flow parameters was used: PB as % of B cells, KI67+ as % of non-naïve CD4 T cells, KI67+ as % of non-naïve CD8 T cells, HLA-DR+CD38+ as % of non-naïve CD4 T cells, HLA-DR+CD38+ as % of non-naïve CD8 T cells—graphically displayed in fig. S10. |