PMC:7402624 / 74175-74559 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"2169","span":{"begin":83,"end":91},"obj":"Species"},{"id":"2170","span":{"begin":349,"end":356},"obj":"Species"},{"id":"2172","span":{"begin":74,"end":82},"obj":"Disease"},{"id":"2173","span":{"begin":340,"end":348},"obj":"Disease"}],"attributes":[{"id":"A2169","pred":"tao:has_database_id","subj":"2169","obj":"Tax:9606"},{"id":"A2170","pred":"tao:has_database_id","subj":"2170","obj":"Tax:9606"},{"id":"A2172","pred":"tao:has_database_id","subj":"2172","obj":"MESH:C000657245"},{"id":"A2173","pred":"tao:has_database_id","subj":"2173","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"embedding space\nA feature-weighted kernel density was computed across all COVID-19 patients, and was displayed as a contour plot (Fig. 6G and fig. S8, A to D). Whereas traditional kernel density methods apply the same base kernel function to every point to visualize point density, here the base kernel function centered at each individual COVID-19 patient sample was instead weighted"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T438","span":{"begin":74,"end":82},"obj":"Disease"},{"id":"T439","span":{"begin":340,"end":348},"obj":"Disease"}],"attributes":[{"id":"A438","pred":"mondo_id","subj":"T438","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A439","pred":"mondo_id","subj":"T439","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"embedding space\nA feature-weighted kernel density was computed across all COVID-19 patients, and was displayed as a contour plot (Fig. 6G and fig. S8, A to D). Whereas traditional kernel density methods apply the same base kernel function to every point to visualize point density, here the base kernel function centered at each individual COVID-19 patient sample was instead weighted"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1053","span":{"begin":16,"end":17},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1054","span":{"begin":114,"end":115},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1055","span":{"begin":151,"end":152},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"embedding space\nA feature-weighted kernel density was computed across all COVID-19 patients, and was displayed as a contour plot (Fig. 6G and fig. S8, A to D). Whereas traditional kernel density methods apply the same base kernel function to every point to visualize point density, here the base kernel function centered at each individual COVID-19 patient sample was instead weighted"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T50300","span":{"begin":147,"end":149},"obj":"Chemical"},{"id":"T64153","span":{"begin":218,"end":222},"obj":"Chemical"},{"id":"T67801","span":{"begin":291,"end":295},"obj":"Chemical"}],"attributes":[{"id":"A47010","pred":"chebi_id","subj":"T50300","obj":"http://purl.obolibrary.org/obo/CHEBI_29385"},{"id":"A95782","pred":"chebi_id","subj":"T64153","obj":"http://purl.obolibrary.org/obo/CHEBI_22695"},{"id":"A87264","pred":"chebi_id","subj":"T67801","obj":"http://purl.obolibrary.org/obo/CHEBI_22695"}],"text":"embedding space\nA feature-weighted kernel density was computed across all COVID-19 patients, and was displayed as a contour plot (Fig. 6G and fig. S8, A to D). Whereas traditional kernel density methods apply the same base kernel function to every point to visualize point density, here the base kernel function centered at each individual COVID-19 patient sample was instead weighted"}

{"project":"LitCovid-sentences","denotations":[{"id":"T461","span":{"begin":16,"end":159},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"embedding space\nA feature-weighted kernel density was computed across all COVID-19 patients, and was displayed as a contour plot (Fig. 6G and fig. S8, A to D). Whereas traditional kernel density methods apply the same base kernel function to every point to visualize point density, here the base kernel function centered at each individual COVID-19 patient sample was instead weighted"}