PMC:7402624 / 69983-71703
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T535 | 856-861 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T536 | 1256-1261 | Body_part | denotes | Joint | http://purl.org/sig/ont/fma/fma7490 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T38 | 275-280 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
T39 | 856-861 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T40 | 1439-1444 | Body_part | denotes | Scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
1503 | 1171-1179 | Species | denotes | med usin | Tax:9606 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1006 | 89-94 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
T1007 | 285-286 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T1008 | 468-473 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Tests |
T1009 | 591-595 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T1010 | 640-644 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T1011 | 740-744 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T1012 | 762-769 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
T1013 | 856-861 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T1014 | 856-861 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T1015 | 952-957 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
T1016 | 990-991 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T1017 | 1114-1121 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
T1018 | 1256-1261 | http://purl.obolibrary.org/obo/UBERON_0000982 | denotes | Joint |
T1019 | 1256-1261 | http://purl.obolibrary.org/obo/UBERON_0004905 | denotes | Joint |
T1020 | 1358-1365 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T84878 | 287-294 | Chemical | denotes | mixture | http://purl.obolibrary.org/obo/CHEBI_60004 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T431 | 0-10 | Sentence | denotes | Statistics |
T432 | 11-184 | Sentence | denotes | Due to the heterogeneity of clinical and flow cytometric data, non-parametric tests of association were preferentially used throughout this study unless otherwise specified. |
T433 | 185-467 | Sentence | denotes | Correlation coefficients between ordered features (including discrete ordinal, continuous scale, or a mixture of the two) were quantified by the Spearman rank correlation coefficient and significance was assessed by the corresponding non-parametric methods (null hypothesis: ρ = 0). |
T434 | 468-668 | Sentence | denotes | Tests of association between mixed continuous versus non-ordered categorical variables were performed by unpaired Wilcoxon test (for n = 2 categories) or by Kruskal-Wallis test (for n > 2 categories). |
T435 | 669-745 | Sentence | denotes | Association between categorical variables was assessed by Fisher-exact test. |
T436 | 746-947 | Sentence | denotes | For association testing illustrated in heatmaps, categorical variables with more than 2 categories (e.g., ABO blood type) were transformed into binary dummy variables for each category versus the rest. |
T437 | 948-1062 | Sentence | denotes | All tests were performed two-sided, using a nominal significance threshold of P < 0.05 unless otherwise specified. |
T438 | 1063-1255 | Sentence | denotes | When appropriate to adjust for multiple hypothesis testing, false discovery rate (FDR) correction was performed using the Benjamini-Hochberg procedure at the FDR < 0.05 significance threshold. |
T439 | 1256-1545 | Sentence | denotes | Joint statistical modeling to adjust for confounding of demographic factors (age, sex, and race) when testing for association of UMAP Components 1 and 2 with the NIH Ordinal Severity Scale was performed using ordinal logistic regression provided by the polr function of the R package MASS. |
T440 | 1546-1628 | Sentence | denotes | Statistical analysis of flow cytometry data was performed using R package rstatix. |
T441 | 1629-1720 | Sentence | denotes | Other details, if any, for each experiment are provided within the relevant figure legends. |