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PMC:7402624 / 69983-71703 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T535 856-861 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T536 1256-1261 Body_part denotes Joint http://purl.org/sig/ont/fma/fma7490

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T38 275-280 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T39 856-861 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T40 1439-1444 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1503 1171-1179 Species denotes med usin Tax:9606

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1006 89-94 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T1007 285-286 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1008 468-473 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Tests
T1009 591-595 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T1010 640-644 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T1011 740-744 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T1012 762-769 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T1013 856-861 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T1014 856-861 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T1015 952-957 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T1016 990-991 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1017 1114-1121 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T1018 1256-1261 http://purl.obolibrary.org/obo/UBERON_0000982 denotes Joint
T1019 1256-1261 http://purl.obolibrary.org/obo/UBERON_0004905 denotes Joint
T1020 1358-1365 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T84878 287-294 Chemical denotes mixture http://purl.obolibrary.org/obo/CHEBI_60004

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T431 0-10 Sentence denotes Statistics
T432 11-184 Sentence denotes Due to the heterogeneity of clinical and flow cytometric data, non-parametric tests of association were preferentially used throughout this study unless otherwise specified.
T433 185-467 Sentence denotes Correlation coefficients between ordered features (including discrete ordinal, continuous scale, or a mixture of the two) were quantified by the Spearman rank correlation coefficient and significance was assessed by the corresponding non-parametric methods (null hypothesis: ρ = 0).
T434 468-668 Sentence denotes Tests of association between mixed continuous versus non-ordered categorical variables were performed by unpaired Wilcoxon test (for n = 2 categories) or by Kruskal-Wallis test (for n > 2 categories).
T435 669-745 Sentence denotes Association between categorical variables was assessed by Fisher-exact test.
T436 746-947 Sentence denotes For association testing illustrated in heatmaps, categorical variables with more than 2 categories (e.g., ABO blood type) were transformed into binary dummy variables for each category versus the rest.
T437 948-1062 Sentence denotes All tests were performed two-sided, using a nominal significance threshold of P < 0.05 unless otherwise specified.
T438 1063-1255 Sentence denotes When appropriate to adjust for multiple hypothesis testing, false discovery rate (FDR) correction was performed using the Benjamini-Hochberg procedure at the FDR < 0.05 significance threshold.
T439 1256-1545 Sentence denotes Joint statistical modeling to adjust for confounding of demographic factors (age, sex, and race) when testing for association of UMAP Components 1 and 2 with the NIH Ordinal Severity Scale was performed using ordinal logistic regression provided by the polr function of the R package MASS.
T440 1546-1628 Sentence denotes Statistical analysis of flow cytometry data was performed using R package rstatix.
T441 1629-1720 Sentence denotes Other details, if any, for each experiment are provided within the relevant figure legends.