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PMC:7402624 / 6927-8060 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T34 456-462 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 456-462 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
205 9-17 Species denotes patients Tax:9606
206 224-232 Species denotes patients Tax:9606
207 335-343 Species denotes patients Tax:9606
208 528-536 Species denotes patients Tax:9606
209 583-591 Species denotes patients Tax:9606
210 697-705 Species denotes patients Tax:9606
211 886-894 Species denotes patients Tax:9606
212 1002-1010 Species denotes patients Tax:9606
213 724-742 Chemical denotes hydroxychloroquine MESH:D006886
214 744-747 Chemical denotes HCQ MESH:D006886
215 759-767 Chemical denotes steroids MESH:D013256
216 782-792 Chemical denotes remdesivir MESH:C000606551
217 0-8 Disease denotes COVID-19 MESH:C000657245
218 75-77 Disease denotes HD MESH:D006816
219 215-223 Disease denotes COVID-19 MESH:C000657245
220 326-334 Disease denotes COVID-19 MESH:C000657245
221 448-470 Disease denotes chronic kidney disease MESH:D051436
222 494-508 Disease denotes thromboembolic MESH:D013923
223 626-632 Disease denotes cancer MESH:D009369

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T56 0-8 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T57 75-77 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T58 82-84 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T59 215-223 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 326-334 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 448-470 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T62 456-470 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T64 626-632 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T71 22-23 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 82-84 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T73 100-102 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T74 304-306 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T75 304-306 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T76 456-462 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T77 456-462 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T78 456-462 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T79 475-477 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T80 483-484 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 516-517 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 538-540 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T83 611-612 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 636-637 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 686-688 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T86 846-847 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 1091-1099 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T20 75-77 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T21 82-84 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T22 304-306 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T23 724-742 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T24 759-767 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T25 782-792 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 448-470 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T5 494-514 Phenotype denotes thromboembolic event http://purl.obolibrary.org/obo/HP_0001907
T6 626-632 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T47 0-210 Sentence denotes COVID-19 patients had a median age of 60 and were significantly older than HD and RD (median age of 41 and 29 respectively), though the age distributions for all three cohorts overlapped (Fig. 1A and fig. S1A).
T48 211-308 Sentence denotes For COVID-19 patients, median BMI was 29 (range 16-78), and 68% were African American (table S2).
T49 309-410 Sentence denotes Comorbidities in COVID-19 patients were dominated by cardiovascular risk factors (83% of the cohort).
T50 411-515 Sentence denotes Nearly 20% of subjects suffered from chronic kidney disease and 18% had a previous thromboembolic event.
T51 516-685 Sentence denotes A subset of patients (18%) were immunosuppressed, and 7% and 6% of patients were known to have a diagnosis of cancer or a pre-existing pulmonary condition, respectively.
T52 686-793 Sentence denotes 45% of the patients were treated with hydroxychloroquine (HCQ), 31% with steroids, and 29% with remdesivir.
T53 794-865 Sentence denotes Eighteen individuals died in the hospital or within a 30 day follow-up.
T54 866-980 Sentence denotes The majority of the patients were symptomatic at diagnosis and were enrolled ~9 days after initiation of symptoms.
T55 981-1133 Sentence denotes Approximately 30% of patients required mechanical ventilation at presentation, with additional extracorporeal membrane oxygenation (ECMO) in four cases.