PMC:7402624 / 63476-64078
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T516 | 11-16 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T517 | 43-50 | Body_part | denotes | heparin | http://purl.org/sig/ont/fma/fma82839 |
| T518 | 115-121 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
| T519 | 159-164 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T34 | 11-16 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T35 | 159-164 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T36 | 232-236 | Body_part | denotes | tube | http://purl.obolibrary.org/obo/UBERON_0000025 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1976 | 469-472 | Gene | denotes | ACK | Gene:10188 |
| 1977 | 43-50 | Chemical | denotes | heparin | MESH:D006493 |
| 1978 | 189-193 | Chemical | denotes | RPMI | |
| 1979 | 424-428 | Chemical | denotes | RPMI |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T420 | 58-60 | Disease | denotes | BD | http://purl.obolibrary.org/obo/MONDO_0007191 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T941 | 11-16 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T942 | 11-16 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T943 | 51-56 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tubes |
| T944 | 75-80 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | Tubes |
| T945 | 115-121 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
| T946 | 153-164 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | whole blood |
| T947 | 153-164 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | whole blood |
| T948 | 177-180 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 1:1 |
| T949 | 222-223 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T950 | 232-236 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tube |
| T951 | 342-347 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tubes |
| T952 | 550-551 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T61508 | 36-42 | Chemical | denotes | sodium | http://purl.obolibrary.org/obo/CHEBI_26708 |
| T55 | 43-50 | Chemical | denotes | heparin | http://purl.obolibrary.org/obo/CHEBI_28304 |
| T23659 | 479-485 | Chemical | denotes | buffer | http://purl.obolibrary.org/obo/CHEBI_35225 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T134 | 473-478 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | lysis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T374 | 0-74 | Sentence | denotes | Peripheral blood was collected into sodium heparin tubes (BD, Cat#367874). |
| T375 | 75-142 | Sentence | denotes | Tubes were spun (15 min, 3000 rpm, RT), plasma removed, and banked. |
| T376 | 143-333 | Sentence | denotes | Remaining whole blood was diluted 1:1 with 1% RPMI (table S7) and layered into a SEPMATE tube (STEMCELL Technologies, Cat#85450) pre-loaded with lymphoprep (Alere Technologies, Cat#1114547). |
| T377 | 334-522 | Sentence | denotes | SEPMATE tubes were spun (10 min, 1200xg, RT) and the PBMC layer collected, washed with 1% RPMI (10 min, 1600 rpm, RT) and treated with ACK lysis buffer (5 min, ThermoFisher, Cat#A1049201). |
| T378 | 523-602 | Sentence | denotes | Samples were filtered with a 70 μm filter, counted, and aliquoted for staining. |