PMC:7402624 / 63458-64078
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T516 | 29-34 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T517 | 61-68 | Body_part | denotes | heparin | http://purl.org/sig/ont/fma/fma82839 |
T518 | 133-139 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T519 | 177-182 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T34 | 29-34 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T35 | 177-182 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T36 | 250-254 | Body_part | denotes | tube | http://purl.obolibrary.org/obo/UBERON_0000025 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
1976 | 487-490 | Gene | denotes | ACK | Gene:10188 |
1977 | 61-68 | Chemical | denotes | heparin | MESH:D006493 |
1978 | 207-211 | Chemical | denotes | RPMI | |
1979 | 442-446 | Chemical | denotes | RPMI |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T420 | 76-78 | Disease | denotes | BD | http://purl.obolibrary.org/obo/MONDO_0007191 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T941 | 29-34 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T942 | 29-34 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T943 | 69-74 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tubes |
T944 | 93-98 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | Tubes |
T945 | 133-139 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T946 | 171-182 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | whole blood |
T947 | 171-182 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | whole blood |
T948 | 195-198 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 1:1 |
T949 | 240-241 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T950 | 250-254 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tube |
T951 | 360-365 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tubes |
T952 | 568-569 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T61508 | 54-60 | Chemical | denotes | sodium | http://purl.obolibrary.org/obo/CHEBI_26708 |
T55 | 61-68 | Chemical | denotes | heparin | http://purl.obolibrary.org/obo/CHEBI_28304 |
T23659 | 497-503 | Chemical | denotes | buffer | http://purl.obolibrary.org/obo/CHEBI_35225 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T134 | 491-496 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | lysis |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T373 | 0-17 | Sentence | denotes | Sample processing |
T374 | 18-92 | Sentence | denotes | Peripheral blood was collected into sodium heparin tubes (BD, Cat#367874). |
T375 | 93-160 | Sentence | denotes | Tubes were spun (15 min, 3000 rpm, RT), plasma removed, and banked. |
T376 | 161-351 | Sentence | denotes | Remaining whole blood was diluted 1:1 with 1% RPMI (table S7) and layered into a SEPMATE tube (STEMCELL Technologies, Cat#85450) pre-loaded with lymphoprep (Alere Technologies, Cat#1114547). |
T377 | 352-540 | Sentence | denotes | SEPMATE tubes were spun (10 min, 1200xg, RT) and the PBMC layer collected, washed with 1% RPMI (10 min, 1600 rpm, RT) and treated with ACK lysis buffer (5 min, ThermoFisher, Cat#A1049201). |
T378 | 541-620 | Sentence | denotes | Samples were filtered with a 70 μm filter, counted, and aliquoted for staining. |