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PMC:7402624 / 63458-64078 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T516 29-34 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T517 61-68 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T518 133-139 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T519 177-182 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T34 29-34 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T35 177-182 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T36 250-254 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1976 487-490 Gene denotes ACK Gene:10188
1977 61-68 Chemical denotes heparin MESH:D006493
1978 207-211 Chemical denotes RPMI
1979 442-446 Chemical denotes RPMI

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T420 76-78 Disease denotes BD http://purl.obolibrary.org/obo/MONDO_0007191

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T941 29-34 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T942 29-34 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T943 69-74 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tubes
T944 93-98 http://purl.obolibrary.org/obo/UBERON_0000025 denotes Tubes
T945 133-139 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T946 171-182 http://purl.obolibrary.org/obo/UBERON_0000178 denotes whole blood
T947 171-182 http://www.ebi.ac.uk/efo/EFO_0000296 denotes whole blood
T948 195-198 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1:1
T949 240-241 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T950 250-254 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T951 360-365 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tubes
T952 568-569 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T61508 54-60 Chemical denotes sodium http://purl.obolibrary.org/obo/CHEBI_26708
T55 61-68 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T23659 497-503 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T134 491-496 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T373 0-17 Sentence denotes Sample processing
T374 18-92 Sentence denotes Peripheral blood was collected into sodium heparin tubes (BD, Cat#367874).
T375 93-160 Sentence denotes Tubes were spun (15 min, 3000 rpm, RT), plasma removed, and banked.
T376 161-351 Sentence denotes Remaining whole blood was diluted 1:1 with 1% RPMI (table S7) and layered into a SEPMATE tube (STEMCELL Technologies, Cat#85450) pre-loaded with lymphoprep (Alere Technologies, Cat#1114547).
T377 352-540 Sentence denotes SEPMATE tubes were spun (10 min, 1200xg, RT) and the PBMC layer collected, washed with 1% RPMI (10 min, 1600 rpm, RT) and treated with ACK lysis buffer (5 min, ThermoFisher, Cat#A1049201).
T378 541-620 Sentence denotes Samples were filtered with a 70 μm filter, counted, and aliquoted for staining.