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PMC:7402624 / 5763-6926 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T32 577-582 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T33 639-649 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
147 29-36 Species denotes patient Tax:9606
167 567-570 Gene denotes CD4 Gene:920
168 571-574 Gene denotes CD8 Gene:925
169 612-615 Gene denotes CD4 Gene:920
170 616-619 Gene denotes CD8 Gene:925
171 128-135 Species denotes patient Tax:9606
172 221-229 Species denotes patients Tax:9606
173 289-297 Species denotes patients Tax:9606
174 322-329 Species denotes patient Tax:9606
175 459-467 Species denotes patients Tax:9606
176 660-667 Species denotes patient Tax:9606
177 1022-1029 Species denotes patient Tax:9606
178 180-182 Disease denotes HD MESH:D006816
179 212-220 Disease denotes COVID-19 MESH:C000657245
180 280-288 Disease denotes COVID-19 MESH:C000657245
181 313-321 Disease denotes COVID-19 MESH:C000657245
182 450-458 Disease denotes COVID-19 MESH:C000657245
183 768-770 Disease denotes HD MESH:D006816
184 840-851 Disease denotes lymphopenia MESH:D008231
185 1013-1021 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T45 180-182 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T46 203-205 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T47 212-220 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 280-288 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 313-321 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 450-458 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T51 768-770 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T52 840-851 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T53 999-1001 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T54 1013-1021 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 1092-1094 Disease denotes BH http://purl.obolibrary.org/obo/MONDO_0010873

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T60 113-114 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T61 203-205 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T62 232-233 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T63 311-312 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 567-570 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T65 571-574 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T66 575-582 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T67 612-615 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T68 616-619 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T69 999-1001 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T70 1082-1086 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T14 180-182 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T15 203-205 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T16 339-344 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T17 768-770 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T18 984-989 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T19 999-1001 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 840-851 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T42 112-298 Sentence denotes (A) Overview of patient cohorts in study, including healthy donors (HD), recovered donors (RD), and COVID-19 patients. (B) Quantification of key clinical parameters in COVID-19 patients.
T43 299-668 Sentence denotes Each dot is a COVID-19 patient; Healthy donor range indicated in green. (C) Spearman correlation and hierarchical clustering of indicated features for COVID-19 patients. (D) Representative flow cytometry plots and (E) frequencies of major immune subsets. (F) Ratio of CD4:CD8 T cells. (G) Spearman correlation of CD4:CD8 ratio and clinical lymphocyte count per patient.
T44 669-785 Sentence denotes Dark and light gray shaded regions represent clinical normal range and normal range based on study HD, respectively.
T45 786-1036 Sentence denotes Vertical dashed line indicates clinical threshold for lymphopenia. (H) Spearman correlations of indicated subsets with various clinical features. (E and F) Each dot represents an individual healthy donor (green), RD (blue), or COVID-19 patient (red).
T46 1037-1163 Sentence denotes Significance determined by unpaired Wilcoxon test with BH correction: *p < 0.05, **p < 0.01, ***p < 0.001, and ****p < 0.0001.