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PMC:7402624 / 52530-53776 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T440 12-16 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T441 188-192 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T442 272-289 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T443 300-307 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T444 456-460 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T445 603-609 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T446 748-756 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T23 272-289 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1716 29-38 Species denotes SARS-CoV2 Tax:2697049
1717 548-556 Species denotes patients Tax:9606
1718 650-658 Species denotes patients Tax:9606
1719 728-736 Species denotes patients Tax:9606
1720 839-847 Species denotes patients Tax:9606
1721 948-956 Species denotes patients Tax:9606
1722 1098-1106 Species denotes patients Tax:9606
1723 1237-1245 Species denotes patients Tax:9606
1724 474-483 Species denotes SARS-CoV2 Tax:2697049
1725 664-673 Species denotes SARS-CoV2 Tax:2697049
1726 39-48 Disease denotes infection MESH:D007239
1727 207-218 Disease denotes dysfunction MESH:D009461
1728 414-422 Disease denotes COVID-19 MESH:C000657245
1729 637-645 Disease denotes COVID-19 MESH:C000657245
1730 926-934 Disease denotes COVID-19 MESH:C000657245
1731 1068-1079 Disease denotes dysfunction MESH:D009461
1732 1083-1097 Disease denotes critically ill MESH:D016638
1733 1228-1236 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T356 29-33 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T357 39-48 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T358 414-422 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T359 474-478 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T360 637-645 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T361 664-668 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T362 926-934 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T363 1061-1079 Disease denotes immune dysfunction http://purl.obolibrary.org/obo/MONDO_0005046
T364 1228-1236 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T807 10-16 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T808 186-192 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T809 252-257 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T810 309-311 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T811 439-444 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T812 454-460 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T813 603-609 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T814 908-909 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T815 1041-1042 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T816 1140-1147 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T97 115-130 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T98 337-353 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses
T99 461-467 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T100 1209-1224 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T303 0-75 Sentence denotes The T and B cell response to SARS-CoV2 infection remains poorly understood.
T304 76-227 Sentence denotes Some studies suggest an overaggressive immune response leading to immunopathology (51) whereas others suggest T cell exhaustion or dysfunction (12–14).
T305 228-354 Sentence denotes Autopsies revealed high virus levels in the respiratory tract and other tissues (52), suggesting ineffective immune responses.
T306 355-473 Sentence denotes Nevertheless, non-hospitalized subjects who recovered from COVID-19 had evidence of virus-specific T cell memory (53).
T307 474-627 Sentence denotes SARS-CoV2-specific antibodies are also found in convalescent subjects and patients are currently being treated with convalescent plasma therapy (30, 54).
T308 628-795 Sentence denotes However, COVID-19 ICU patients have SARS-CoV2-specific antibodies (30), raising the question of why patients with these antibody responses are not controlling disease.
T309 796-969 Sentence denotes In general, these studies report on single patients or small cohorts and comprehensive deep immune profiling of a large number of COVID-19 hospitalized patients is limiting.
T310 970-1107 Sentence denotes Such knowledge would address the critical question of whether there is a common profile of immune dysfunction in critically ill patients.
T311 1108-1246 Sentence denotes Such data would also help guide testing of therapeutics to enhance, inhibit, or otherwise tailor the immune response in COVID-19 patients.

2_test

Id Subject Object Predicate Lexical cue
32669297-32203188-135105218 220-222 32203188 denotes 12
32669297-32203186-135105218 220-222 32203186 denotes 12
32669297-32425950-135105218 220-222 32425950 denotes 12
32669297-32085846-135105219 309-311 32085846 denotes 52
32669297-32219428-135105220 619-621 32219428 denotes 30
32669297-32113510-135105221 623-625 32113510 denotes 54
32669297-32219428-135105222 695-697 32219428 denotes 30