PMC:7402624 / 35674-36502
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T327 | 47-52 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T328 | 70-75 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T329 | 83-88 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T330 | 119-124 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T331 | 217-220 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T332 | 236-241 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T333 | 257-260 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T334 | 276-281 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T335 | 609-612 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T336 | 628-633 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1291 | 41-44 | Gene | denotes | CD8 | Gene:925 |
| 1292 | 64-67 | Gene | denotes | CD4 | Gene:920 |
| 1293 | 224-228 | Gene | denotes | CD38 | Gene:952 |
| 1294 | 230-233 | Gene | denotes | CD4 | Gene:920 |
| 1295 | 264-268 | Gene | denotes | CD38 | Gene:952 |
| 1296 | 270-273 | Gene | denotes | CD8 | Gene:925 |
| 1297 | 616-620 | Gene | denotes | CD38 | Gene:952 |
| 1298 | 622-625 | Gene | denotes | CD4 | Gene:920 |
| 1299 | 139-147 | Species | denotes | patients | Tax:9606 |
| 1300 | 378-386 | Species | denotes | patients | Tax:9606 |
| 1301 | 657-665 | Species | denotes | patients | Tax:9606 |
| 1302 | 290-293 | Chemical | denotes | PBs | MESH:D007854 |
| 1303 | 641-644 | Chemical | denotes | PBs | MESH:D007854 |
| 1304 | 130-138 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1305 | 326-328 | Disease | denotes | HD | MESH:D006816 |
| 1306 | 369-377 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1307 | 648-656 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T285 | 130-138 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T286 | 326-328 | Disease | denotes | HD | http://purl.obolibrary.org/obo/MONDO_0007739 |
| T287 | 355-357 | Disease | denotes | RD | http://purl.obolibrary.org/obo/MONDO_0009973 |
| T288 | 369-377 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T289 | 648-656 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T596 | 1-2 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T597 | 41-44 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
| T598 | 45-52 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T599 | 58-75 | http://purl.obolibrary.org/obo/CL_0000895 | denotes | naïve CD4 T cells |
| T600 | 81-88 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
| T601 | 119-124 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T602 | 204-205 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T603 | 224-228 | http://purl.obolibrary.org/obo/PR_000001408 | denotes | CD38 |
| T604 | 230-233 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T605 | 234-241 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T606 | 264-268 | http://purl.obolibrary.org/obo/PR_000001408 | denotes | CD38 |
| T607 | 270-273 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
| T608 | 274-281 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T609 | 355-357 | http://purl.obolibrary.org/obo/CLO_0008770 | denotes | RD |
| T610 | 503-507 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T611 | 616-620 | http://purl.obolibrary.org/obo/PR_000001408 | denotes | CD38 |
| T612 | 622-625 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T613 | 626-633 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T257 | 221-223 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
| T258 | 261-263 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
| T259 | 319-324 | Chemical | denotes | donor | http://purl.obolibrary.org/obo/CHEBI_17891 |
| T260 | 326-328 | Chemical | denotes | HD | http://purl.obolibrary.org/obo/CHEBI_73925 |
| T261 | 348-353 | Chemical | denotes | donor | http://purl.obolibrary.org/obo/CHEBI_17891 |
| T262 | 355-357 | Chemical | denotes | RD | http://purl.obolibrary.org/obo/CHEBI_73812 |
| T263 | 613-615 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T207 | 0-187 | Sentence | denotes | (A) Global viSNE projection of non-naïve CD8 T cells, non-naïve CD4 T cells, and B cells for all subjects pooled, with cells from COVID-19 patients at D0 and D7 concatenated and overlaid. |
| T208 | 188-459 | Sentence | denotes | Frequencies of (B) KI67+ and HLA-DR+CD38+ CD4 T cells, (C) KI67+ and HLA-DR+CD38+ CD8 T cells, or (D) PBs as indicated for healthy donor (HD; green), recovered donor (RD; blue), or COVID-19 patients (red) with paired samples at D0 and D7 indicated by the connecting line. |
| T209 | 460-565 | Sentence | denotes | Significance determined by paired Wilcoxon test: *p < 0.05, **p < 0.01, ***p < 0.001, and ****p < 0.0001. |
| T210 | 566-828 | Sentence | denotes | Longitudinal patterns (see Methods) of (E) HLA-DR+CD38+ CD4 T cells or (F) PBs in COVID-19 patients shown as frequency and representative flow cytometry plots. (G) Spearman correlations of clinical parameters with longitudinal fold changes in immune populations. |