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PMC:7402624 / 29832-31625 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T254 46-48 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T255 93-98 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T256 166-168 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T257 380-382 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T258 451-453 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T259 592-594 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T260 614-617 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T261 637-642 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T262 690-694 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T263 775-779 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T264 888-895 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T265 904-907 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T266 916-919 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T267 927-935 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T268 966-968 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T269 1028-1036 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T270 1141-1143 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T271 1161-1169 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T272 1212-1214 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T273 1292-1299 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T274 1393-1396 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T275 1401-1404 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T276 1563-1568 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T277 1666-1668 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T278 1755-1757 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T14 93-98 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1100 531-542 Gene denotes S5, B and C Gene:6193
1101 609-613 Gene denotes CD38 Gene:952
1102 631-634 Gene denotes CD4 Gene:920
1103 677-682 Gene denotes CXCR5 Gene:643
1104 684-687 Gene denotes CD4 Gene:920
1105 769-772 Gene denotes CD8 Gene:925
1106 299-310 Gene denotes S5, B and C Gene:6193
1107 331-339 Species denotes patients Tax:9606
1108 430-438 Species denotes patients Tax:9606
1109 830-838 Species denotes patients Tax:9606
1110 872-881 Species denotes SARS-CoV2 Tax:2697049
1111 1108-1116 Species denotes patients Tax:9606
1112 1534-1543 Species denotes SARS-CoV2 Tax:2697049
1113 1783-1792 Species denotes SARS-CoV2 Tax:2697049
1114 1252-1261 Species denotes SARS-CoV2 Tax:2697049
1115 1383-1392 Species denotes SARS-CoV2 Tax:2697049
1116 46-48 Chemical denotes PB
1117 118-122 Chemical denotes cTfh
1118 166-168 Chemical denotes PB
1119 195-199 Chemical denotes cTfh
1120 213-217 Chemical denotes cTfh
1121 276-280 Chemical denotes cTfh
1122 361-365 Chemical denotes cTfh
1123 380-382 Chemical denotes PB
1124 451-453 Chemical denotes PB
1125 508-512 Chemical denotes cTfh
1126 1458-1462 Chemical denotes cTfh
1127 1514-1518 Chemical denotes cTfh
1128 1755-1757 Chemical denotes PB
1129 13-29 Disease denotes viral infections MESH:D001102
1130 821-829 Disease denotes COVID-19 MESH:C000657245
1131 1307-1319 Disease denotes inflammation MESH:D007249

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T231 13-29 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T232 46-48 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T233 166-168 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T234 380-382 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T235 451-453 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T236 592-594 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T237 821-829 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T238 872-876 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T239 966-968 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T240 1141-1143 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T241 1212-1214 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T242 1252-1256 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T243 1307-1319 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T244 1383-1387 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T245 1534-1538 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T246 1666-1668 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T247 1755-1757 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T248 1783-1787 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T508 93-98 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T509 93-98 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T510 203-212 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T511 237-238 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T512 266-275 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T513 299-301 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T514 303-304 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T515 351-360 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T516 498-507 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T517 531-533 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T518 535-536 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T519 609-613 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T520 631-634 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T521 635-642 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T522 662-663 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T523 684-687 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T524 688-694 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T525 721-722 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T526 769-772 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T527 773-779 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T528 1090-1091 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T529 1184-1185 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T530 1432-1441 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T531 1498-1499 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T532 1561-1568 http://purl.obolibrary.org/obo/CL_0000236 denotes B cells
T533 1596-1598 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T202 46-48 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T204 166-168 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T206 299-301 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T207 380-382 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T209 451-453 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T211 531-533 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T212 592-594 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T214 618-620 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T215 888-895 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T216 966-968 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T218 1141-1143 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T220 1212-1214 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T222 1262-1270 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T223 1292-1299 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T224 1596-1598 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T225 1666-1668 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T227 1755-1757 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T66 13-29 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T67 1307-1319 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T174 0-138 Sentence denotes During acute viral infections or vaccination, PB responses are transiently detectable in the blood and correlate with cTfh responses (40).
T175 139-312 Sentence denotes Comparing the frequency of PB to the frequency of total cTfh or activated cTfh, however, revealed a weak correlation only with activated cTfh (Fig. 4F and fig. S5, B and C).
T176 313-544 Sentence denotes Furthermore, some patients had robust activated cTfh responses but PB frequencies similar to controls, whereas other patients with robust PB responses had relatively low frequencies of activated cTfh (Fig. 4F and fig. S5, B and C).
T177 545-803 Sentence denotes However, there was also an association between PB frequency and CD38+HLA-DR+ or KI67+ CD4 T cells that might reflect a role for non-CXCR5+ CD4 T cell help (fig. S5D), but such a relationship did not exist for the equivalent CD8 T cell populations (fig. S5E).
T178 804-1004 Sentence denotes Although ~70% of COVID-19 patients analyzed made antibodies against SARS-CoV2 spike protein (79/111 IgG; 77/115 IgM (44)), antibody levels did not correlate with PB frequencies (Fig. 4G and fig. S5F).
T179 1005-1128 Sentence denotes The occasional lack of antibody did not appear to be related to immunosuppression in a small number of patients (fig. S5G).
T180 1129-1368 Sentence denotes The lack of PB correlation with antibody suggests that a proportion of these large PB responses were: i) generated against SARS-CoV2 antigens other than the spike protein or ii) inflammation-driven and perhaps non-specific or low affinity.
T181 1369-1609 Sentence denotes Notably, anti-SARS-CoV2 IgG and IgM levels correlated with the activated, but not total, cTfh response, suggesting that at least a proportion of cTfh were providing SARS-CoV2-specific help to B cells (Fig. 4, H and I, and fig. S5, H and I).
T182 1610-1793 Sentence denotes Although defining the precise specificity of the robust PB populations will require future studies, these data suggest that at least some of the PB response is specific for SARS-CoV2.

2_test

Id Subject Object Predicate Lexical cue
32669297-28620653-135105210 134-136 28620653 denotes 40