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PMC:7402624 / 1834-3144 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T7 29-34 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T8 141-153 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577
T9 191-196 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T10 325-329 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T11 366-370 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T12 408-412 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T13 605-608 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T14 625-630 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T15 638-643 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T16 697-715 Body_part denotes regulatory T cells http://purl.org/sig/ont/fma/fma84070
T17 710-715 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T18 731-736 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T19 747-751 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T20 832-837 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T21 935-939 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T22 999-1003 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 638-643 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
63 319-322 Gene denotes CD4 Gene:920
64 402-405 Gene denotes CD4 Gene:920
65 593-597 Gene denotes IL-6 Gene:3569
66 602-608 Gene denotes GM-CSF Gene:1437
67 619-622 Gene denotes CD4 Gene:920
68 360-363 Gene denotes CD8 Gene:925
69 432-445 Species denotes coronaviruses Tax:11118
70 503-512 Species denotes SARS-CoV2 Tax:2697049
71 1027-1035 Species denotes patients Tax:9606
72 0-9 Species denotes SARS-CoV2 Tax:2697049
73 215-224 Disease denotes infection MESH:D007239
74 1018-1026 Disease denotes COVID-19 MESH:C000657245
75 1109-1121 Disease denotes cytotoxicity MESH:D064420
76 1265-1273 Disease denotes COVID-19 MESH:C000657245
77 1274-1285 Disease denotes lymphopenia MESH:D008231

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 0-4 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 215-224 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 503-507 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 1018-1026 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 1265-1273 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 1274-1285 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T15 27-34 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T16 110-116 http://purl.obolibrary.org/obo/PR_000001015 denotes CD45RA
T17 191-196 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18 304-309 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 319-322 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T20 323-329 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T21 345-350 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T22 360-363 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T23 364-370 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T24 402-405 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T25 406-412 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T26 464-465 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 619-622 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T28 623-630 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T29 638-643 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T30 638-643 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T31 697-715 http://purl.obolibrary.org/obo/CL_0000815 denotes regulatory T cells
T32 717-721 http://purl.obolibrary.org/obo/CL_0000792 denotes Treg
T33 729-736 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T34 740-742 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T35 745-751 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T36 830-837 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T37 838-841 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T38 933-939 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T39 940-950 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T40 997-1003 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T41 1004-1014 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T42 1219-1229 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T43 1287-1289 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 10-17 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T2 84-92 Chemical denotes effector http://purl.obolibrary.org/obo/CHEBI_35224
T3 101-103 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T4 118-126 Chemical denotes effector http://purl.obolibrary.org/obo/CHEBI_35224
T5 593-595 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T7 602-604 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T9 71-77 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T10 93-99 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T11 127-133 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T12 228-240 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T13 527-549 http://purl.obolibrary.org/obo/GO_0006954 denotes Inflammatory responses
T14 933-950 http://purl.obolibrary.org/obo/GO_0042110 denotes T cell activation
T15 935-950 http://purl.obolibrary.org/obo/GO_0001775 denotes cell activation
T16 997-1014 http://purl.obolibrary.org/obo/GO_0042110 denotes T cell activation
T17 999-1014 http://purl.obolibrary.org/obo/GO_0001775 denotes cell activation

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 1274-1285 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T17 0-256 Sentence denotes SARS-CoV2 antigen-specific T cells have been identified in the central memory (CM), effector memory (EM), and CD45RA+ effector memory (EMRA) compartments (5) but the characteristics of these cells and their role in infection or pathogenesis remain unclear.
T18 257-526 Sentence denotes Recovered subjects more often have evidence of virus-specific CD4 T cell responses than virus-specific CD8 T cell responses, though pre-existing CD4 T cell responses to other coronaviruses also are found in a subset of subjects in the absence of SARS-CoV2 exposure (6).
T19 527-744 Sentence denotes Inflammatory responses have been reported, including increases in IL-6- or GM-CSF-producing CD4 T cells in the blood (7) or decreases in immunoregulatory subsets such as regulatory T cells (Treg) or ɣδ T cells (8–11).
T20 745-956 Sentence denotes T cell exhaustion (12, 13) or increased inhibitory receptor expression on peripheral T cells has also been reported (7, 14), though these inhibitory receptors are also increased following T cell activation (15).
T21 957-1196 Sentence denotes Moreover, although there is evidence of T cell activation in COVID-19 patients (16), some studies have found decreases in polyfunctionality (12, 17) or cytotoxicity (12); however, these changes have not been observed in other studies (13).
T22 1197-1310 Sentence denotes Furthermore, how this activation should be viewed in the context of COVID-19 lymphopenia (18–20) remains unclear.