> top > docs > PMC:7394275 > spans > 6721-20735 > annotations

PMC:7394275 / 6721-20735 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T108 39-47 SP_7 denotes COVID-19
T109 100-108 SP_7 denotes COVID-19
T110 154-160 NCBITaxon:4751 denotes fungal
T111 259-265 NCBITaxon:4751 denotes fungal
T112 279-287 SP_7 denotes COVID-19
T113 388-396 SP_7 denotes COVID-19
T114 454-460 NCBITaxon:4751 denotes fungal
T115 571-585 UBERON:0000922 denotes extrapulmonary
T116 586-592 NCBITaxon:4751 denotes fungal
T117 634-639 UBERON:0001443 denotes chest
T118 709-715 NCBITaxon:4751 denotes fungal
T119 726-738 GO:0065007 denotes surveillance
T120 847-854 CHEBI:59132;CHEBI:59132 denotes antigen
T121 859-867 GO:0042571 denotes antibody
T122 879-885 CHEBI:37671;CHEBI:37671 denotes glucan
T123 933-938 UBERON:0001977 denotes serum
T124 997-1012 UBERON:0002186;BV_4 denotes bronchoalveolar
T125 1013-1019 BV_4;UBERON:0004821 denotes lavage
T126 1020-1025 BV_4;UBERON:0006314 denotes fluid
T127 1027-1031 UBERON:0001348;BV_4 denotes BALF
T128 1037-1045 UBERON:0003126 denotes tracheal
T129 1509-1525 CHEBI:86327;CHEBI:86327 denotes antifungal drugs
T130 1604-1610 NCBITaxon:4751 denotes fungal
T131 1625-1631 NCBITaxon:4751 denotes fungal
T132 1656-1664 SP_7 denotes COVID-19
T133 1678-1689 NCBITaxon:5052 denotes Aspergillus
T134 1694-1701 NCBITaxon:5478 denotes Candida
T135 1745-1751 NCBITaxon:4751 denotes fungus
T136 1759-1763 UBERON:0002048 denotes lung
T137 1864-1875 NCBITaxon:5052 denotes Aspergillus
T138 1876-1883 NCBITaxon:species denotes species
T139 1915-1919 UBERON:0000104 denotes life
T140 1945-1953 SP_7 denotes COVID-19
T141 2111-2120 UBERON:0002048 denotes pulmonary
T142 2148-2161 GO:0030097;CL:0000037 denotes hematopoietic
T143 2162-2171 CL:0000037 denotes stem cell
T144 2207-2212 UBERON:0000062 denotes organ
T145 2266-2277 GO:0030097 denotes hemopoietic
T146 2475-2479 UBERON:0002048 denotes lung
T147 2529-2540 GO:0050817 denotes coagulation
T148 2561-2572 UBERON:0001004 denotes respiratory
T149 2663-2667 UBERON:0002048 denotes lung
T150 2668-2673 UBERON:0006314 denotes fluid
T151 2677-2683 UBERON:0000479 denotes tissue
T152 2691-2697 NCBITaxon:4751 denotes fungal
T153 2795-2806 NCBITaxon:5052 denotes Aspergillus
T154 2834-2845 CHEBI:17790;CHEBI:17790 denotes methenamine
T155 2869-2882 CHEBI:29149;CHEBI:29149 denotes periodic acid
T156 2912-2918 UBERON:0000479 denotes tissue
T157 2970-2981 NCBITaxon:5052 denotes Aspergillus
T158 3010-3015 NCBITaxon:4751 denotes fungi
T159 3024-3032 NCBITaxon:5506 denotes Fusarium
T160 3033-3037 NCBITaxon:species denotes spp.
T161 3042-3054 NCBITaxon:286 denotes Scedosporium
T162 3055-3058 NCBITaxon:species denotes spp
T163 3336-3347 NCBITaxon:5052 denotes Aspergillus
T164 3379-3385 NCBITaxon:4751 denotes fungal
T165 3463-3474 NCBITaxon:5052 denotes Aspergillus
T166 3736-3745 GO:0005840 denotes ribosomal
T167 3801-3812 NCBITaxon:5052 denotes Aspergillus
T168 3816-3823 UBERON:0000479 denotes tissues
T169 3827-3831 BV_4 denotes BALF
T170 3883-3894 NCBITaxon:5052 denotes Aspergillus
T171 3895-3898 NCBITaxon:species denotes spp
T172 3904-3910 PR:000006147 denotes CYP51A
T173 3935-3936 NCBITaxon:8296 denotes A
T174 3936-3947 NCBITaxon:31032 denotes . fumigatus
T175 4056-4064 CHEBI:33893;CHEBI:33893 denotes reagents
T176 4094-4099 UBERON:0001977 denotes serum
T177 4104-4108 BV_4 denotes BALF
T178 4340-4345 UBERON:0000178 denotes blood
T179 4390-4401 UBERON:0001004 denotes respiratory
T180 4711-4716 CHEBI:23888;CHEBI:23888 denotes drugs
T181 4777-4786 CHEBI:35727;CHEBI:35727 denotes triazoles
T182 4788-4800 CHEBI:6076;CHEBI:6076 denotes itraconazole
T183 4802-4814 CHEBI:10023;CHEBI:10023 denotes voriconazole
T184 4816-4828 CHEBI:64355;CHEBI:64355 denotes posaconazole
T185 4844-4858 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T186 4950-4958 CHEBI:35727;CHEBI:35727 denotes triazole
T187 4959-4964 CHEBI:23888;CHEBI:23888 denotes drugs
T188 4999-5003 CHEBI:23888;CHEBI:23888 denotes drug
T189 5064-5070 CHEBI:68452;CHEBI:68452 denotes azoles
T190 5081-5086 CHEBI:23888;CHEBI:23888 denotes drugs
T191 5157-5165 SP_7 denotes COVID-19
T192 5235-5254 CHEBI:36047;CHEBI:36047 denotes antibacterial drugs
T193 5369-5375 UBERON:0002405 denotes immune
T194 5423-5430 NCBITaxon:5478 denotes Candida
T195 5431-5438 NCBITaxon:species denotes species
T196 5536-5541 UBERON:0000178 denotes blood
T197 5691-5697 CHEBI:37684;CHEBI:37684 denotes mannan
T198 5713-5716 GO:0071735 denotes IgG
T199 5724-5726 NCBITaxon:7719 denotes C.
T200 5727-5735 NCBITaxon:8296 denotes albicans
T201 5746-5754 GO:0042571 denotes antibody
T202 5902-5907 UBERON:0000178 denotes blood
T203 5938-5943 UBERON:0000178 denotes blood
T204 6192-6199 NCBITaxon:5475 denotes Candida
T205 6344-6351 NCBITaxon:5478 denotes Candida
T206 6382-6387 UBERON:0000178 denotes blood
T207 6552-6561 GO:0005618 denotes cell wall
T208 6577-6584 NCBITaxon:5478 denotes Candida
T209 6605-6610 NCBITaxon:4751 denotes fungi
T210 6622-6634 NCBITaxon:106841 denotes Cryptococcus
T211 6635-6642 NCBITaxon:species denotes species
T212 6644-6655 NCBITaxon:229219 denotes Blastomyces
T213 6656-6663 NCBITaxon:species denotes species
T214 6669-6678 NCBITaxon:10090 denotes Mucorales
T215 6747-6752 UBERON:0001977 denotes serum
T216 6785-6792 NCBITaxon:5478 denotes Candida
T217 6803-6808 NCBITaxon:4751 denotes fungi
T218 6824-6830 CHEBI:37684;CHEBI:37684 denotes mannan
T219 6846-6849 GO:0071735 denotes IgG
T220 6963-6969 CHEBI:37684;CHEBI:37684 denotes mannan
T221 7219-7226 NCBITaxon:5475 denotes Candida
T222 7363-7370 NCBITaxon:5478 denotes Candida
T223 7705-7710 UBERON:0000178 denotes blood
T224 8127-8132 UBERON:0000178 denotes blood
T225 8132-8139 UBERON:0006314 denotes -stream
T226 8170-8177 NCBITaxon:5478 denotes Candida
T227 8178-8186 SO:0001060 denotes isolates
T228 8203-8214 NCBITaxon:5478 denotes C. glabrata
T229 8218-8220 NCBITaxon:5478 denotes C.
T230 8221-8233 NCBITaxon:7656 denotes parapsilosis
T231 8566-8578 CHEBI:57248;CHEBI:57248 denotes echinocandin
T232 8633-8644 CHEBI:46081;CHEBI:46081 denotes fluconazole
T233 8646-8658 CHEBI:10023;CHEBI:10023 denotes voriconazole
T234 8660-8672 CHEBI:6076;CHEBI:6076 denotes itraconazole
T235 8679-8693 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T236 8734-8740 CHEBI:68452;CHEBI:68452 denotes azoles
T237 8820-8828 SP_7 denotes COVID-19
T238 9102-9108 UBERON:0007311 denotes sputum
T239 9110-9114 BV_4 denotes BALF
T240 9255-9264 CHEBI:26130;CHEBI:26130 denotes pigmented
T241 9280-9286 UBERON:0000479 denotes tissue
T242 9315-9321 UBERON:0000479 denotes tissue
T243 9344-9355 CHEBI:51686;CHEBI:51686 denotes hematoxylin
T244 9453-9458 NCBITaxon:genus denotes genus
T245 9463-9470 NCBITaxon:species denotes species
T246 9674-9679 NCBITaxon:4751 denotes fungi
T247 9716-9721 SO:0000704 denotes genes
T248 9948-9953 NCBITaxon:4751 denotes fungi
T249 9962-9967 UBERON:0001977 denotes serum
T250 9988-9999 UBERON:0006314 denotes body fluids
T251 10027-10033 UBERON:0000479 denotes tissue
T252 10740-10752 CHEBI:64355;CHEBI:64355 denotes posaconazole
T253 10773-10787 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T254 10788-10793 CHEBI:18059;CHEBI:18059 denotes lipid
T255 10794-10801 GO:0032991 denotes complex
T256 10813-10827 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T257 10832-10844 CHEBI:64355;CHEBI:64355 denotes posaconazole
T258 10845-10849 UBERON:0000165 denotes oral
T259 10921-10934 CHEBI:85979;CHEBI:85979 denotes isavuconazole
T260 11062-11070 CHEBI:48121;CHEBI:48121 denotes polyenes
T261 11075-11081 CHEBI:68452;CHEBI:68452 denotes azoles
T262 11085-11093 CHEBI:48121;CHEBI:48121 denotes polyenes
T263 11099-11112 CHEBI:57248;CHEBI:57248 denotes echinocandins
T264 11139-11147 SP_7 denotes COVID-19
T265 11162-11167 SP_6;NCBITaxon:9606 denotes human
T266 11185-11190 NCBITaxon:10239 denotes virus
T267 11222-11225 PR:000001004 denotes CD4
T268 11228-11240 CL:0000084 denotes T-lymphocyte
T269 11288-11294 UBERON:0002405 denotes immune
T270 11484-11496 NCBITaxon:106841 denotes Cryptococcus
T271 11497-11504 NCBITaxon:species denotes species
T272 11515-11517 NCBITaxon:7719 denotes C.
T273 11518-11528 NCBITaxon:5478 denotes neoformans
T274 11533-11535 NCBITaxon:7719 denotes C.
T275 11536-11542 NCBITaxon:5478 denotes gattii
T276 11543-11550 NCBITaxon:species denotes species
T277 11826-11845 UBERON:0001359 denotes cerebrospinal fluid
T278 11847-11850 UBERON:0001359 denotes CSF
T279 11947-11959 NCBITaxon:106841 denotes Cryptococcus
T280 11977-11984 GO:0007114 denotes budding
T281 12086-12090 CHEBI:2509;CHEBI:2509 denotes agar
T282 12247-12251 GO:0040007 denotes grow
T283 12310-12325 CHEBI:18154;CHEBI:18154 denotes polysaccharides
T284 12378-12389 UBERON:0006314 denotes body fluids
T285 12398-12403 UBERON:0001977 denotes serum
T286 12431-12437 UBERON:0000479 denotes tissue
T287 12469-12476 CHEBI:59132;CHEBI:59132 denotes antigen
T288 12478-12482 PR:000003817 denotes CrAg
T289 12723-12734 UBERON:0001004 denotes respiratory
T290 12758-12771 UBERON:0001087 denotes pleural fluid
T291 12776-12782 UBERON:0007311 denotes sputum
T292 12979-12985 NCBITaxon:4751 denotes fungal
T293 13166-13185 UBERON:0001359 denotes cerebrospinal fluid
T294 13215-13222 CHEBI:59132;CHEBI:59132 denotes antigen
T295 13300-13322 UBERON:0001017 denotes central nervous system
T296 13503-13509 UBERON:0007023 denotes adults
T297 13737-13751 CHEBI:2682;CHEBI:2682 denotes amphotericin B
T298 13771-13782 CHEBI:5100;CHEBI:5100 denotes flucytosine
T299 13796-13807 CHEBI:46081;CHEBI:46081 denotes fluconazole
T300 13833-13844 CHEBI:46081;CHEBI:46081 denotes fluconazole
T301 13847-13858 CHEBI:5100;CHEBI:5100 denotes flucytosine
T302 13862-13876 CHEBI:2682;CHEBI:2682 denotes amphotericin B
T303 13877-13889 CHEBI:23614;CHEBI:23614 denotes deoxycholate
T304 13892-13903 CHEBI:46081;CHEBI:46081 denotes fluconazole
T305 13934-13945 CHEBI:46081;CHEBI:46081 denotes fluconazole
T306 14002-14013 CHEBI:46081;CHEBI:46081 denotes fluconazole
T59922 39-47 SP_7 denotes COVID-19
T57253 100-108 SP_7 denotes COVID-19
T6252 154-160 NCBITaxon:4751 denotes fungal
T23292 259-265 NCBITaxon:4751 denotes fungal
T24130 279-287 SP_7 denotes COVID-19
T77495 388-396 SP_7 denotes COVID-19
T35520 454-460 NCBITaxon:4751 denotes fungal
T39402 571-585 UBERON:0000922 denotes extrapulmonary
T42455 586-592 NCBITaxon:4751 denotes fungal
T86981 634-639 UBERON:0001443 denotes chest
T59688 709-715 NCBITaxon:4751 denotes fungal
T73764 726-738 GO:0065007 denotes surveillance
T74324 847-854 CHEBI:59132;CHEBI:59132 denotes antigen
T30906 859-867 GO:0042571 denotes antibody
T87476 879-885 CHEBI:37671;CHEBI:37671 denotes glucan
T49156 933-938 UBERON:0001977 denotes serum
T64926 997-1012 UBERON:0002186;BV_4 denotes bronchoalveolar
T36463 1013-1019 BV_4;UBERON:0004821 denotes lavage
T72964 1020-1025 BV_4;UBERON:0006314 denotes fluid
T64314 1027-1031 UBERON:0001348;BV_4 denotes BALF
T62571 1037-1045 UBERON:0003126 denotes tracheal
T91278 1509-1525 CHEBI:86327;CHEBI:86327 denotes antifungal drugs
T63409 1604-1610 NCBITaxon:4751 denotes fungal
T27949 1625-1631 NCBITaxon:4751 denotes fungal
T13669 1656-1664 SP_7 denotes COVID-19
T90008 1678-1689 NCBITaxon:5052 denotes Aspergillus
T66500 1694-1701 NCBITaxon:5478 denotes Candida
T99249 1745-1751 NCBITaxon:4751 denotes fungus
T35314 1759-1763 UBERON:0002048 denotes lung
T1659 1864-1875 NCBITaxon:5052 denotes Aspergillus
T58904 1876-1883 NCBITaxon:species denotes species
T47255 1915-1919 UBERON:0000104 denotes life
T51772 1945-1953 SP_7 denotes COVID-19
T67109 2111-2120 UBERON:0002048 denotes pulmonary
T39323 2148-2161 GO:0030097;CL:0000037 denotes hematopoietic
T49768 2162-2171 CL:0000037 denotes stem cell
T85989 2207-2212 UBERON:0000062 denotes organ
T29170 2266-2277 GO:0030097 denotes hemopoietic
T75320 2475-2479 UBERON:0002048 denotes lung
T86222 2529-2540 GO:0050817 denotes coagulation
T89145 2561-2572 UBERON:0001004 denotes respiratory
T69728 2663-2667 UBERON:0002048 denotes lung
T44415 2668-2673 UBERON:0006314 denotes fluid
T93439 2677-2683 UBERON:0000479 denotes tissue
T55053 2691-2697 NCBITaxon:4751 denotes fungal
T56389 2795-2806 NCBITaxon:5052 denotes Aspergillus
T23187 2834-2845 CHEBI:17790;CHEBI:17790 denotes methenamine
T71536 2869-2882 CHEBI:29149;CHEBI:29149 denotes periodic acid
T44220 2912-2918 UBERON:0000479 denotes tissue
T96980 2970-2981 NCBITaxon:5052 denotes Aspergillus
T35360 3010-3015 NCBITaxon:4751 denotes fungi
T33859 3024-3032 NCBITaxon:5506 denotes Fusarium
T11824 3033-3037 NCBITaxon:species denotes spp.
T13465 3042-3054 NCBITaxon:286 denotes Scedosporium
T11097 3055-3058 NCBITaxon:species denotes spp
T71196 3336-3347 NCBITaxon:5052 denotes Aspergillus
T95830 3379-3385 NCBITaxon:4751 denotes fungal
T31042 3463-3474 NCBITaxon:5052 denotes Aspergillus
T44167 3736-3745 GO:0005840 denotes ribosomal
T80438 3801-3812 NCBITaxon:5052 denotes Aspergillus
T62724 3816-3823 UBERON:0000479 denotes tissues
T23730 3827-3831 BV_4 denotes BALF
T49081 3883-3894 NCBITaxon:5052 denotes Aspergillus
T81108 3895-3898 NCBITaxon:species denotes spp
T34970 3904-3910 PR:000006147 denotes CYP51A
T26672 3935-3936 NCBITaxon:8296 denotes A
T47994 3936-3947 NCBITaxon:31032 denotes . fumigatus
T85259 4056-4064 CHEBI:33893;CHEBI:33893 denotes reagents
T55352 4094-4099 UBERON:0001977 denotes serum
T62010 4104-4108 BV_4 denotes BALF
T90815 4340-4345 UBERON:0000178 denotes blood
T48524 4390-4401 UBERON:0001004 denotes respiratory
T65597 4711-4716 CHEBI:23888;CHEBI:23888 denotes drugs
T46137 4777-4786 CHEBI:35727;CHEBI:35727 denotes triazoles
T52391 4788-4800 CHEBI:6076;CHEBI:6076 denotes itraconazole
T91401 4802-4814 CHEBI:10023;CHEBI:10023 denotes voriconazole
T3792 11139-11147 SP_7 denotes COVID-19
T85248 4816-4828 CHEBI:64355;CHEBI:64355 denotes posaconazole
T90411 4844-4858 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T73200 4950-4958 CHEBI:35727;CHEBI:35727 denotes triazole
T5910 4959-4964 CHEBI:23888;CHEBI:23888 denotes drugs
T48332 4999-5003 CHEBI:23888;CHEBI:23888 denotes drug
T86042 5064-5070 CHEBI:68452;CHEBI:68452 denotes azoles
T32435 5081-5086 CHEBI:23888;CHEBI:23888 denotes drugs
T75578 5157-5165 SP_7 denotes COVID-19
T34882 5235-5254 CHEBI:36047;CHEBI:36047 denotes antibacterial drugs
T49366 5369-5375 UBERON:0002405 denotes immune
T64003 5423-5430 NCBITaxon:5478 denotes Candida
T61911 5431-5438 NCBITaxon:species denotes species
T23957 5536-5541 UBERON:0000178 denotes blood
T48865 5691-5697 CHEBI:37684;CHEBI:37684 denotes mannan
T92373 5713-5716 GO:0071735 denotes IgG
T47162 5724-5726 NCBITaxon:7719 denotes C.
T57710 5727-5735 NCBITaxon:8296 denotes albicans
T35396 5746-5754 GO:0042571 denotes antibody
T53099 5902-5907 UBERON:0000178 denotes blood
T24955 5938-5943 UBERON:0000178 denotes blood
T59727 6192-6199 NCBITaxon:5475 denotes Candida
T54891 6344-6351 NCBITaxon:5478 denotes Candida
T61456 6382-6387 UBERON:0000178 denotes blood
T65209 6552-6561 GO:0005618 denotes cell wall
T85105 6577-6584 NCBITaxon:5478 denotes Candida
T42218 6605-6610 NCBITaxon:4751 denotes fungi
T87069 6622-6634 NCBITaxon:106841 denotes Cryptococcus
T36492 6635-6642 NCBITaxon:species denotes species
T15328 6644-6655 NCBITaxon:229219 denotes Blastomyces
T4760 6656-6663 NCBITaxon:species denotes species
T58331 6669-6678 NCBITaxon:10090 denotes Mucorales
T42684 6747-6752 UBERON:0001977 denotes serum
T72467 6785-6792 NCBITaxon:5478 denotes Candida
T82705 6803-6808 NCBITaxon:4751 denotes fungi
T23301 6824-6830 CHEBI:37684;CHEBI:37684 denotes mannan
T42723 6846-6849 GO:0071735 denotes IgG
T74986 6963-6969 CHEBI:37684;CHEBI:37684 denotes mannan
T77993 7219-7226 NCBITaxon:5475 denotes Candida
T59886 7363-7370 NCBITaxon:5478 denotes Candida
T14852 7705-7710 UBERON:0000178 denotes blood
T20925 8127-8132 UBERON:0000178 denotes blood
T91350 8132-8139 UBERON:0006314 denotes -stream
T38107 8170-8177 NCBITaxon:5478 denotes Candida
T79192 8178-8186 SO:0001060 denotes isolates
T9230 8203-8214 NCBITaxon:5478 denotes C. glabrata
T87025 8218-8220 NCBITaxon:5478 denotes C.
T30437 8221-8233 NCBITaxon:7656 denotes parapsilosis
T22370 8566-8578 CHEBI:57248;CHEBI:57248 denotes echinocandin
T46371 8633-8644 CHEBI:46081;CHEBI:46081 denotes fluconazole
T37658 8646-8658 CHEBI:10023;CHEBI:10023 denotes voriconazole
T81153 8660-8672 CHEBI:6076;CHEBI:6076 denotes itraconazole
T23396 8679-8693 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T97471 8734-8740 CHEBI:68452;CHEBI:68452 denotes azoles
T23001 8820-8828 SP_7 denotes COVID-19
T32720 9102-9108 UBERON:0007311 denotes sputum
T9861 9110-9114 BV_4 denotes BALF
T91600 9255-9264 CHEBI:26130;CHEBI:26130 denotes pigmented
T10106 9280-9286 UBERON:0000479 denotes tissue
T83464 9315-9321 UBERON:0000479 denotes tissue
T35434 9344-9355 CHEBI:51686;CHEBI:51686 denotes hematoxylin
T10007 9453-9458 NCBITaxon:genus denotes genus
T7127 9463-9470 NCBITaxon:species denotes species
T90812 9674-9679 NCBITaxon:4751 denotes fungi
T23818 9716-9721 SO:0000704 denotes genes
T97689 9948-9953 NCBITaxon:4751 denotes fungi
T32801 9962-9967 UBERON:0001977 denotes serum
T94920 9988-9999 UBERON:0006314 denotes body fluids
T13019 10027-10033 UBERON:0000479 denotes tissue
T66115 10740-10752 CHEBI:64355;CHEBI:64355 denotes posaconazole
T48234 10773-10787 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T56630 10788-10793 CHEBI:18059;CHEBI:18059 denotes lipid
T55556 10794-10801 GO:0032991 denotes complex
T49844 10813-10827 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T95091 10832-10844 CHEBI:64355;CHEBI:64355 denotes posaconazole
T32997 10845-10849 UBERON:0000165 denotes oral
T69024 10921-10934 CHEBI:85979;CHEBI:85979 denotes isavuconazole
T31837 11062-11070 CHEBI:48121;CHEBI:48121 denotes polyenes
T93633 11075-11081 CHEBI:68452;CHEBI:68452 denotes azoles
T19394 11085-11093 CHEBI:48121;CHEBI:48121 denotes polyenes
T98903 11099-11112 CHEBI:57248;CHEBI:57248 denotes echinocandins
T4250 11162-11167 SP_6;NCBITaxon:9606 denotes human
T80532 11185-11190 NCBITaxon:10239 denotes virus
T69080 11222-11225 PR:000001004 denotes CD4
T57693 11228-11240 CL:0000084 denotes T-lymphocyte
T48016 11288-11294 UBERON:0002405 denotes immune
T2122 11484-11496 NCBITaxon:106841 denotes Cryptococcus
T52255 11497-11504 NCBITaxon:species denotes species
T50703 11515-11517 NCBITaxon:7719 denotes C.
T20343 11518-11528 NCBITaxon:5478 denotes neoformans
T17477 11533-11535 NCBITaxon:7719 denotes C.
T10330 11536-11542 NCBITaxon:5478 denotes gattii
T93842 11543-11550 NCBITaxon:species denotes species
T82098 11826-11845 UBERON:0001359 denotes cerebrospinal fluid
T15522 11847-11850 UBERON:0001359 denotes CSF
T58192 11947-11959 NCBITaxon:106841 denotes Cryptococcus
T54110 11977-11984 GO:0007114 denotes budding
T1942 12086-12090 CHEBI:2509;CHEBI:2509 denotes agar
T86453 12247-12251 GO:0040007 denotes grow
T63138 12310-12325 CHEBI:18154;CHEBI:18154 denotes polysaccharides
T61182 12378-12389 UBERON:0006314 denotes body fluids
T62464 12398-12403 UBERON:0001977 denotes serum
T61960 12431-12437 UBERON:0000479 denotes tissue
T30703 12469-12476 CHEBI:59132;CHEBI:59132 denotes antigen
T90969 12478-12482 PR:000003817 denotes CrAg
T24495 12723-12734 UBERON:0001004 denotes respiratory
T44771 12758-12771 UBERON:0001087 denotes pleural fluid
T43630 12776-12782 UBERON:0007311 denotes sputum
T49362 12979-12985 NCBITaxon:4751 denotes fungal
T52785 13166-13185 UBERON:0001359 denotes cerebrospinal fluid
T36771 13215-13222 CHEBI:59132;CHEBI:59132 denotes antigen
T28958 13300-13322 UBERON:0001017 denotes central nervous system
T89127 13503-13509 UBERON:0007023 denotes adults
T93441 13737-13751 CHEBI:2682;CHEBI:2682 denotes amphotericin B
T94698 13771-13782 CHEBI:5100;CHEBI:5100 denotes flucytosine
T49658 13796-13807 CHEBI:46081;CHEBI:46081 denotes fluconazole
T9605 13833-13844 CHEBI:46081;CHEBI:46081 denotes fluconazole
T18149 13847-13858 CHEBI:5100;CHEBI:5100 denotes flucytosine
T36092 13862-13876 CHEBI:2682;CHEBI:2682 denotes amphotericin B
T79474 13877-13889 CHEBI:23614;CHEBI:23614 denotes deoxycholate
T28968 13892-13903 CHEBI:46081;CHEBI:46081 denotes fluconazole
T44295 13934-13945 CHEBI:46081;CHEBI:46081 denotes fluconazole
T89336 14002-14013 CHEBI:46081;CHEBI:46081 denotes fluconazole

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 634-639 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T7 859-867 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T8 933-938 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T9 1759-1763 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T10 2148-2171 Body_part denotes hematopoietic stem cell http://purl.org/sig/ont/fma/fma86475
T11 2167-2171 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T12 2201-2212 Body_part denotes solid organ http://purl.org/sig/ont/fma/fma55670
T13 2475-2479 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 2663-2667 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T15 2677-2683 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T16 2912-2918 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T17 3521-3524 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T18 3736-3745 Body_part denotes ribosomal http://purl.org/sig/ont/fma/fma66867
T19 3746-3749 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T20 3816-3823 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T21 4094-4099 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T22 4340-4345 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T23 5536-5541 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T24 5713-5716 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T25 5746-5754 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T26 5902-5907 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T27 5928-5932 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T28 5938-5943 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T29 6120-6124 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T30 6382-6387 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T31 6552-6556 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T32 6747-6752 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T33 6846-6849 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T34 7371-7374 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T35 7705-7710 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T36 8127-8132 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T37 9102-9108 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T38 9120-9124 Body_part denotes skin http://purl.org/sig/ont/fma/fma7163
T39 9280-9286 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T40 9315-9321 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T41 9683-9686 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T42 9954-9957 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T43 9962-9967 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T44 9988-9999 Body_part denotes body fluids http://purl.org/sig/ont/fma/fma280556
T45 9988-9992 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T46 10027-10033 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T47 10788-10793 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T48 11192-11195 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T49 11222-11240 Body_part denotes CD4 + T-lymphocyte http://purl.org/sig/ont/fma/fma70572
T50 11228-11240 Body_part denotes T-lymphocyte http://purl.org/sig/ont/fma/fma62870
T51 11253-11258 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T52 11826-11845 Body_part denotes cerebrospinal fluid http://purl.org/sig/ont/fma/fma20935
T53 11847-11850 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T54 12310-12325 Body_part denotes polysaccharides http://purl.org/sig/ont/fma/fma82746
T55 12378-12389 Body_part denotes body fluids http://purl.org/sig/ont/fma/fma280556
T56 12378-12382 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T57 12398-12403 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T58 12405-12408 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T59 12431-12437 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T60 12758-12771 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T61 12776-12782 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T62 12991-12994 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T63 13166-13185 Body_part denotes cerebrospinal fluid http://purl.org/sig/ont/fma/fma20935
T64 13187-13190 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T65 13300-13322 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T66 13490-13493 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T67 13601-13604 Body_part denotes hiv http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 634-639 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 933-938 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T5 1759-1763 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 2207-2212 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T7 2475-2479 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 2663-2667 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 2677-2683 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T10 2912-2918 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T11 3437-3459 Body_part denotes morphological features http://purl.obolibrary.org/obo/UBERON_0034768
T12 4094-4099 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 4340-4345 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T14 5536-5541 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T15 5741-5745 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T16 5902-5907 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T17 5928-5932 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T18 5938-5943 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T19 6120-6124 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T20 6382-6387 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T21 6747-6752 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T22 7705-7710 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T23 8127-8132 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T24 9102-9108 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T25 9120-9124 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014
T26 9280-9286 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T27 9315-9321 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T28 9962-9967 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T29 10027-10033 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T30 11826-11845 Body_part denotes cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0001359
T31 12398-12403 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T32 12431-12437 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T33 12758-12771 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T34 12776-12782 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T35 13166-13185 Body_part denotes cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0001359
T36 13300-13322 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T37 13308-13322 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
274 39-47 Disease denotes COVID-19 MESH:C000657245
275 64-84 Disease denotes Fungal Co-infections MESH:D060085
294 288-296 Species denotes patients Tax:9606
295 444-452 Species denotes patients Tax:9606
296 689-697 Species denotes patients Tax:9606
297 981-989 Species denotes patients Tax:9606
298 1665-1673 Species denotes patients Tax:9606
299 1678-1689 Species denotes Aspergillus Tax:746128
300 1694-1701 Species denotes Candida Tax:5478
301 1821-1833 Species denotes Cryptococcus Tax:5207
302 100-108 Disease denotes COVID-19 MESH:C000657245
303 161-174 Disease denotes co-infections MESH:D060085
304 279-287 Disease denotes COVID-19 MESH:C000657245
305 388-396 Disease denotes COVID-19 MESH:C000657245
306 461-471 Disease denotes infections MESH:D007239
307 593-603 Disease denotes infections MESH:D007239
308 1215-1225 Disease denotes infections MESH:D007239
309 1632-1645 Disease denotes co-infections MESH:D060085
310 1656-1664 Disease denotes COVID-19 MESH:C000657245
311 1759-1774 Disease denotes lung infections MESH:D012141
313 1836-1858 Disease denotes Invasive Aspergillosis MESH:D055744
344 1954-1962 Species denotes patients Tax:9606
345 2043-2051 Species denotes patients Tax:9606
346 2458-2466 Species denotes patients Tax:9606
347 2515-2523 Species denotes patients Tax:9606
348 3935-3947 Species denotes A. fumigatus Tax:746128
349 4249-4257 Species denotes patients Tax:9606
350 1864-1875 Species denotes Aspergillus Tax:746128
351 2795-2806 Species denotes Aspergillus Tax:746128
352 2970-2981 Species denotes Aspergillus Tax:746128
353 3336-3347 Species denotes Aspergillus Tax:746128
354 3463-3474 Species denotes Aspergillus Tax:746128
355 3801-3812 Species denotes Aspergillus Tax:746128
356 3883-3894 Species denotes Aspergillus Tax:746128
357 2834-2845 Chemical denotes methenamine MESH:D008709
358 2846-2852 Chemical denotes silver MESH:D012834
359 2860-2863 Chemical denotes GMS
360 2869-2882 Chemical denotes periodic acid MESH:D010504
361 4109-4111 Chemical denotes GM MESH:C012990
362 1932-1941 Disease denotes infection MESH:D007239
363 1945-1953 Disease denotes COVID-19 MESH:C000657245
364 2078-2089 Disease denotes neutropenia MESH:D009503
365 2091-2128 Disease denotes chronic obstructive pulmonary disease MESH:D029424
366 2130-2134 Disease denotes COPD MESH:D029424
367 2246-2264 Disease denotes immunodeficiencies MESH:D007153
368 2266-2288 Disease denotes hemopoietic malignancy MESH:D009369
369 2295-2310 Disease denotes cystic fibrosis MESH:D003550
370 2529-2550 Disease denotes coagulation disorders MESH:D001778
371 2561-2580 Disease denotes respiratory failure MESH:D012131
372 2698-2707 Disease denotes infection MESH:D007239
373 4237-4248 Disease denotes neutropenic MESH:D009503
388 4930-4938 Species denotes patients Tax:9606
389 4777-4786 Chemical denotes triazoles MESH:D014230
390 4788-4800 Chemical denotes itraconazole MESH:D017964
391 4802-4814 Chemical denotes voriconazole MESH:D065819
392 4816-4828 Chemical denotes posaconazole MESH:C101425
393 4830-4841 Chemical denotes esaconazole
394 4844-4858 Chemical denotes Amphotericin B MESH:D000666
395 4881-4894 Chemical denotes echinococcins
396 4896-4906 Chemical denotes micafungin MESH:D000077551
397 4910-4922 Chemical denotes carpofenjing
398 4950-4958 Chemical denotes triazole MESH:D014230
399 5064-5070 Chemical denotes azoles MESH:D001393
400 4499-4518 Disease denotes Infectious Diseases MESH:D003141
401 4624-4645 Disease denotes aspergillus infection MESH:D001228
403 5116-5136 Disease denotes Invasive Candidiasis MESH:D058365
425 5166-5174 Species denotes patients Tax:9606
426 5311-5319 Species denotes patients Tax:9606
427 5724-5735 Species denotes C. albicans Tax:5476
428 7675-7681 Species denotes yeasts Tax:4932
429 8203-8214 Species denotes C. glabrata Tax:5478
430 8218-8233 Species denotes C. parapsilosis Tax:5480
431 5423-5430 Species denotes Candida Tax:5478
432 6192-6199 Species denotes Candida Tax:5478
433 6577-6584 Species denotes Candida Tax:5478
434 6622-6634 Species denotes Cryptococcus Tax:5207
435 6785-6792 Species denotes Candida Tax:5478
436 7219-7226 Species denotes Candida Tax:5478
437 7363-7370 Species denotes Candida Tax:5478
438 8170-8177 Species denotes Candida Tax:5478
439 6537-6540 Chemical denotes BDG
440 5157-5165 Disease denotes COVID-19 MESH:C000657245
441 5347-5358 Disease denotes neutropenia MESH:D009503
442 5408-5417 Disease denotes infection MESH:D007239
443 6298-6309 Disease denotes candidiasis MESH:D002177
444 6324-6361 Disease denotes candidiasis or deep Candida infection MESH:C536777
445 7418-7428 Disease denotes candidemia MESH:D058387
460 8495-8503 Species denotes patients Tax:9606
461 8566-8578 Chemical denotes echinocandin MESH:D054714
462 8580-8591 Chemical denotes caspofungin MESH:D000077336
463 8593-8603 Chemical denotes micafungin MESH:D000077551
464 8609-8622 Chemical denotes anidulafungin MESH:D000077612
465 8625-8631 Chemical denotes azoles MESH:D001393
466 8633-8644 Chemical denotes fluconazole MESH:D015725
467 8646-8658 Chemical denotes voriconazole MESH:D065819
468 8660-8672 Chemical denotes itraconazole MESH:D017964
469 8679-8693 Chemical denotes Amphotericin B MESH:D000666
470 8734-8740 Chemical denotes azoles MESH:D001393
471 8318-8337 Disease denotes Infectious Diseases MESH:D003141
472 8408-8429 Disease denotes candidiasis infection MESH:D002177
473 8787-8795 Disease denotes toxicity MESH:D064420
475 8798-8819 Disease denotes Invasive Mucormycosis MESH:D009091
488 8829-8837 Species denotes patients Tax:9606
489 9344-9361 Chemical denotes hematoxylin–eosin
490 9363-9365 Chemical denotes HE
491 9368-9371 Chemical denotes PAS
492 9376-9379 Chemical denotes GMS
493 10009-10017 Chemical denotes paraffin MESH:D010232
494 8820-8828 Disease denotes COVID-19 MESH:C000657245
495 8843-8849 Disease denotes trauma MESH:D014947
496 8851-8868 Disease denotes diabetes mellitus MESH:D003920
497 8892-8903 Disease denotes neutropenia MESH:D009503
498 9120-9132 Disease denotes skin lesions MESH:D012871
499 9251-9271 Disease denotes non-pigmented hyphae MESH:D010859
512 10647-10655 Species denotes patients Tax:9606
513 10740-10752 Chemical denotes posaconazole MESH:C101425
514 10773-10787 Chemical denotes Amphotericin B MESH:D000666
515 10788-10793 Chemical denotes lipid MESH:D008055
516 10813-10827 Chemical denotes Amphotericin B MESH:D000666
517 10832-10844 Chemical denotes posaconazole MESH:C101425
518 10921-10934 Chemical denotes isavuconazole MESH:C508735
519 11062-11081 Chemical denotes polyenes and azoles
520 11085-11093 Chemical denotes polyenes MESH:D011090
521 11099-11112 Chemical denotes echinocandins MESH:D054714
522 10635-10646 Disease denotes neutropenic MESH:D009503
523 10668-10693 Disease denotes graft-versus-host disease MESH:D006086
525 11115-11138 Disease denotes Invasive Cryptococcosis MESH:D003453
553 11222-11225 Gene denotes CD4 Gene:920
554 11259-11261 Gene denotes μL Gene:4591
555 11148-11156 Species denotes patients Tax:9606
556 11515-11528 Species denotes C. neoformans Tax:5207
557 11533-11542 Species denotes C. gattii Tax:552467
558 11998-12004 Species denotes yeasts Tax:4932
559 12179-12187 Species denotes patients Tax:9606
560 12812-12827 Species denotes Cryptococcus is Tax:1198465
561 13247-13255 Species denotes patients Tax:9606
562 11484-11496 Species denotes Cryptococcus Tax:5207
563 11947-11959 Species denotes Cryptococcus Tax:5207
564 12253-12265 Species denotes Cryptococcus Tax:5207
565 12329-12341 Species denotes Cryptococcus Tax:5207
566 13262-13274 Species denotes Cryptococcus Tax:5207
567 11870-11879 Chemical denotes India ink MESH:C028433
568 12067-12090 Chemical denotes Sabouraud dextrose agar
569 11139-11147 Disease denotes COVID-19 MESH:C000657245
570 11162-11206 Disease denotes human immunodeficiency virus (HIV) infection MESH:D015658
571 11323-11337 Disease denotes cryptococcosis MESH:D003453
572 11369-11388 Disease denotes meningoencephalitis MESH:D008590
573 11447-11461 Disease denotes cryptococcosis MESH:D003453
574 11569-11583 Disease denotes cryptococcosis MESH:D003453
575 11691-11700 Disease denotes infection MESH:D007239
576 11796-11810 Disease denotes cryptococcosis MESH:D003453
577 12927-12941 Disease denotes cryptococcosis MESH:D003453
578 13120-13134 Disease denotes cryptococcosis MESH:D003453
579 13331-13354 Disease denotes cryptococcal meningitis MESH:D016919
595 13528-13536 Species denotes children Tax:9606
596 13601-13604 Species denotes hiv Tax:12721
597 13737-13764 Chemical denotes amphotericin B deoxycholate MESH:C059765
598 13771-13782 Chemical denotes flucytosine MESH:D005437
599 13796-13807 Chemical denotes fluconazole MESH:D015725
600 13833-13844 Chemical denotes fluconazole MESH:D015725
601 13847-13858 Chemical denotes flucytosine MESH:D005437
602 13862-13876 Chemical denotes amphotericin B MESH:D000666
603 13877-13889 Chemical denotes deoxycholate MESH:D003840
604 13892-13903 Chemical denotes fluconazole MESH:D015725
605 13934-13945 Chemical denotes fluconazole MESH:D015725
606 14002-14013 Chemical denotes fluconazole MESH:D015725
607 13466-13486 Disease denotes cryptococcal disease MESH:D016919
608 13490-13502 Disease denotes HIV-infected MESH:D015658
609 13620-13640 Disease denotes cryptococcal-disease MESH:D016919

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T100 39-47 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 74-84 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T102 100-108 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 164-174 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T104 279-287 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T105 388-396 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 454-471 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T107 586-603 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T108 1056-1058 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T109 1215-1225 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T110 1635-1648 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T111 1656-1664 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T112 1764-1774 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T113 1836-1858 Disease denotes Invasive Aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T114 1845-1858 Disease denotes Aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T115 1860-1862 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T116 1932-1941 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T117 1945-1953 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 2078-2089 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T119 2091-2128 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T120 2111-2128 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T121 2130-2134 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T122 2246-2264 Disease denotes immunodeficiencies http://purl.obolibrary.org/obo/MONDO_0021094
T123 2295-2310 Disease denotes cystic fibrosis http://purl.obolibrary.org/obo/MONDO_0009061
T124 2312-2314 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T125 2344-2346 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T126 2529-2553 Disease denotes coagulation disorders or http://purl.obolibrary.org/obo/MONDO_0001531
T127 2561-2580 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T128 2691-2707 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T129 2698-2707 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T130 2891-2894 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T131 3699-3701 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T132 4283-4289 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T133 4499-4509 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T134 4636-4645 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T135 4766-4768 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T136 4974-4976 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T137 5116-5136 Disease denotes Invasive Candidiasis http://purl.obolibrary.org/obo/MONDO_0042233|http://purl.obolibrary.org/obo/MONDO_0044067
T139 5125-5136 Disease denotes Candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T140 5138-5140 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T141 5157-5165 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T142 5347-5358 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T143 5408-5417 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T144 5485-5487 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T145 5575-5582 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047
T146 5645-5647 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T147 6298-6309 Disease denotes candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T148 6324-6335 Disease denotes candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T149 6344-6361 Disease denotes Candida infection http://purl.obolibrary.org/obo/MONDO_0002026
T150 6352-6361 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T151 7418-7428 Disease denotes candidemia http://purl.obolibrary.org/obo/MONDO_0044070
T152 7938-7940 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T153 8318-8328 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T154 8408-8419 Disease denotes candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T155 8420-8429 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T156 8540-8542 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T157 8807-8819 Disease denotes Mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T158 8820-8828 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T159 8843-8849 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T160 8851-8868 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T161 8892-8903 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T162 8947-8959 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T163 8966-8978 Disease denotes Mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T164 9368-9371 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T165 10231-10243 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T166 10309-10316 Disease denotes Mycoses http://purl.obolibrary.org/obo/MONDO_0002041
T167 10414-10426 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T168 10554-10566 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T169 10668-10693 Disease denotes graft-versus-host disease http://purl.obolibrary.org/obo/MONDO_0013730
T170 11124-11138 Disease denotes Cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T171 11139-11147 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T172 11168-11184 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T173 11191-11206 Disease denotes (HIV) infection http://purl.obolibrary.org/obo/MONDO_0005109
T174 11197-11206 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T175 11323-11337 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T176 11369-11388 Disease denotes meningoencephalitis http://purl.obolibrary.org/obo/MONDO_0005845
T177 11447-11461 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T178 11569-11583 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T179 11691-11700 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T180 11796-11810 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T181 12927-12941 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T182 13120-13134 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T183 13331-13354 Disease denotes cryptococcal meningitis http://purl.obolibrary.org/obo/MONDO_0005723
T184 13344-13354 Disease denotes meningitis http://purl.obolibrary.org/obo/MONDO_0004796|http://purl.obolibrary.org/obo/MONDO_0021108

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T31 310-312 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T32 310-312 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T33 435-440 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T34 524-526 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T35 634-639 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 959-965 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T37 1095-1102 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T38 1458-1465 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T39 1759-1763 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T40 1759-1763 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T41 2162-2171 http://purl.obolibrary.org/obo/CL_0000034 denotes stem cell
T42 2207-2212 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T43 2231-2233 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T44 2311-2319 http://purl.obolibrary.org/obo/CLO_0002368 denotes (CF) [28
T45 2356-2357 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 2475-2479 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T47 2475-2479 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T48 2663-2667 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T49 2663-2667 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T50 2689-2690 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 3101-3102 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 3647-3648 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 3935-3936 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T54 4112-4119 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T55 4332-4336 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T56 4340-4345 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T57 4340-4345 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T58 4857-4858 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T59 5536-5541 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T60 5536-5541 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T61 5675-5680 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T62 5717-5722 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T63 5741-5745 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T64 5902-5907 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T65 5902-5907 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T66 5938-5943 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T67 5938-5943 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T68 6080-6084 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T69 6266-6275 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T70 6362-6365 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T71 6382-6387 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T72 6382-6387 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T73 6426-6431 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T74 6544-6545 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 6552-6556 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T76 6850-6855 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T77 6944-6945 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 7030-7035 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T79 7121-7122 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 7256-7261 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T81 7293-7295 http://purl.obolibrary.org/obo/CLO_0050160 denotes T2
T82 7581-7582 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 7705-7710 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T84 7705-7710 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T85 7766-7767 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 8047-8048 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 8099-8106 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test is
T88 8127-8132 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T89 8127-8132 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T90 8479-8481 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T91 8692-8693 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T92 8961-8963 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T93 9120-9124 http://purl.obolibrary.org/obo/UBERON_0000014 denotes skin
T94 9120-9124 http://purl.obolibrary.org/obo/UBERON_0001003 denotes skin
T95 9120-9124 http://purl.obolibrary.org/obo/UBERON_0002097 denotes skin
T96 9120-9124 http://purl.obolibrary.org/obo/UBERON_0002199 denotes skin
T97 9120-9124 http://www.ebi.ac.uk/efo/EFO_0000962 denotes skin
T98 9196-9197 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 9381-9383 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T100 9716-9721 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T101 9988-9999 http://purl.obolibrary.org/obo/UBERON_0006314 denotes body fluids
T102 10476-10478 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T103 10786-10787 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T104 10826-10827 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T105 11162-11167 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T106 11185-11190 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T107 11222-11225 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T108 11253-11258 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T109 11604-11605 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 11899-11900 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 12094-12105 http://purl.obolibrary.org/obo/CLO_0001282 denotes 30 °C for 7
T112 12378-12389 http://purl.obolibrary.org/obo/UBERON_0006314 denotes body fluids
T113 12494-12499 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T114 12549-12553 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T115 12555-12558 http://purl.obolibrary.org/obo/CLO_0007247 denotes LAT
T116 12912-12913 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 12975-12978 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes pan
T118 13108-13109 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 13144-13145 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 13300-13322 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T121 13300-13322 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T122 13300-13322 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T123 13540-13544 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T124 13561-13573 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T125 13641-13643 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T126 13750-13751 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T127 13875-13876 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T20 71-73 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T21 310-312 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T22 832-835 Chemical denotes iii http://purl.obolibrary.org/obo/CHEBI_74062
T23 847-854 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T24 879-885 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T25 901-914 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T26 916-918 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T28 1056-1058 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T29 1085-1094 Chemical denotes biomarker http://purl.obolibrary.org/obo/CHEBI_59163
T30 1432-1442 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T31 1467-1470 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T32 1509-1525 Chemical denotes antifungal drugs http://purl.obolibrary.org/obo/CHEBI_35718|http://purl.obolibrary.org/obo/CHEBI_86327
T34 1520-1525 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T35 1534-1537 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T36 1860-1862 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T37 2060-2062 Chemical denotes GC http://purl.obolibrary.org/obo/CHEBI_73890
T38 2290-2292 Chemical denotes HM http://purl.obolibrary.org/obo/CHEBI_74053
T39 2344-2346 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T40 2834-2845 Chemical denotes methenamine http://purl.obolibrary.org/obo/CHEBI_6824
T41 2846-2852 Chemical denotes silver http://purl.obolibrary.org/obo/CHEBI_30512|http://purl.obolibrary.org/obo/CHEBI_9141
T43 2869-2882 Chemical denotes periodic acid http://purl.obolibrary.org/obo/CHEBI_29149
T44 2878-2882 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T45 2891-2894 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T46 3521-3524 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T47 3699-3701 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T48 3704-3707 Chemical denotes iii http://purl.obolibrary.org/obo/CHEBI_74062
T49 3746-3749 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T50 4056-4064 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T51 4109-4111 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T53 4711-4716 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T54 4766-4768 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T55 4777-4786 Chemical denotes triazoles http://purl.obolibrary.org/obo/CHEBI_35727
T56 4788-4800 Chemical denotes itraconazole http://purl.obolibrary.org/obo/CHEBI_6076
T57 4802-4814 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T58 4816-4828 Chemical denotes posaconazole http://purl.obolibrary.org/obo/CHEBI_64355
T59 4896-4906 Chemical denotes micafungin http://purl.obolibrary.org/obo/CHEBI_600520
T60 4950-4958 Chemical denotes triazole http://purl.obolibrary.org/obo/CHEBI_38597
T61 4959-4964 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T62 4974-4976 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T63 4999-5003 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T64 5064-5070 Chemical denotes azoles http://purl.obolibrary.org/obo/CHEBI_68452
T65 5081-5086 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T66 5235-5254 Chemical denotes antibacterial drugs http://purl.obolibrary.org/obo/CHEBI_36047
T67 5249-5254 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T68 5626-5630 Chemical denotes gold http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050
T70 5691-5697 Chemical denotes mannan http://purl.obolibrary.org/obo/CHEBI_28808
T71 6824-6830 Chemical denotes mannan http://purl.obolibrary.org/obo/CHEBI_28808
T72 6963-6969 Chemical denotes mannan http://purl.obolibrary.org/obo/CHEBI_28808
T73 7293-7295 Chemical denotes T2 http://purl.obolibrary.org/obo/CHEBI_29298|http://purl.obolibrary.org/obo/CHEBI_75710
T75 7371-7374 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T76 8566-8578 Chemical denotes echinocandin http://purl.obolibrary.org/obo/CHEBI_57248
T77 8580-8591 Chemical denotes caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T78 8593-8603 Chemical denotes micafungin http://purl.obolibrary.org/obo/CHEBI_600520
T79 8609-8622 Chemical denotes anidulafungin http://purl.obolibrary.org/obo/CHEBI_55346
T80 8625-8631 Chemical denotes azoles http://purl.obolibrary.org/obo/CHEBI_68452
T81 8633-8644 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T82 8646-8658 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T83 8660-8672 Chemical denotes itraconazole http://purl.obolibrary.org/obo/CHEBI_6076
T84 8734-8740 Chemical denotes azoles http://purl.obolibrary.org/obo/CHEBI_68452
T85 8870-8872 Chemical denotes GC http://purl.obolibrary.org/obo/CHEBI_73890
T86 8878-8880 Chemical denotes HM http://purl.obolibrary.org/obo/CHEBI_74053
T87 9344-9355 Chemical denotes hematoxylin http://purl.obolibrary.org/obo/CHEBI_51686
T88 9368-9371 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T89 9477-9480 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T90 9683-9686 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T91 9954-9957 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T92 10610-10620 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T93 10740-10752 Chemical denotes posaconazole http://purl.obolibrary.org/obo/CHEBI_64355
T94 10788-10793 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T95 10803-10827 Chemical denotes liposomal Amphotericin B http://purl.obolibrary.org/obo/CHEBI_2682
T96 10832-10844 Chemical denotes posaconazole http://purl.obolibrary.org/obo/CHEBI_64355
T97 10891-10901 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T98 10921-10934 Chemical denotes isavuconazole http://purl.obolibrary.org/obo/CHEBI_85979
T99 11028-11038 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T100 11062-11070 Chemical denotes polyenes http://purl.obolibrary.org/obo/CHEBI_48121
T101 11075-11081 Chemical denotes azoles http://purl.obolibrary.org/obo/CHEBI_68452
T102 11085-11093 Chemical denotes polyenes http://purl.obolibrary.org/obo/CHEBI_48121
T103 11099-11112 Chemical denotes echinocandins http://purl.obolibrary.org/obo/CHEBI_57248
T104 12077-12085 Chemical denotes dextrose http://purl.obolibrary.org/obo/CHEBI_17634
T105 12086-12090 Chemical denotes agar http://purl.obolibrary.org/obo/CHEBI_2509
T106 12207-12217 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T107 12310-12325 Chemical denotes polysaccharides http://purl.obolibrary.org/obo/CHEBI_18154
T108 12410-12413 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T109 12469-12476 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T110 12632-12635 Chemical denotes LFA http://purl.obolibrary.org/obo/CHEBI_139482
T111 12753-12756 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T112 12991-12994 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T113 13078-13083 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T114 13215-13222 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T115 13641-13643 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T116 13737-13751 Chemical denotes amphotericin B http://purl.obolibrary.org/obo/CHEBI_2682
T117 13752-13764 Chemical denotes deoxycholate http://purl.obolibrary.org/obo/CHEBI_23614
T118 13771-13782 Chemical denotes flucytosine http://purl.obolibrary.org/obo/CHEBI_5100
T119 13796-13807 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T120 13833-13844 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T121 13847-13858 Chemical denotes flucytosine http://purl.obolibrary.org/obo/CHEBI_5100
T122 13862-13876 Chemical denotes amphotericin B http://purl.obolibrary.org/obo/CHEBI_2682
T123 13877-13889 Chemical denotes deoxycholate http://purl.obolibrary.org/obo/CHEBI_23614
T124 13892-13903 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T125 13934-13945 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T126 13948-13951 Chemical denotes iii http://purl.obolibrary.org/obo/CHEBI_74062
T127 14002-14013 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 2529-2540 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation
T3 11977-11984 http://purl.obolibrary.org/obo/GO_0007114 denotes budding
T4 12535-12548 http://purl.obolibrary.org/obo/GO_0007157 denotes agglutination
T5 12535-12548 http://purl.obolibrary.org/obo/GO_0000752 denotes agglutination

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T3 916-918 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T4 4109-4111 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T2 901-914 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T40 0-84 Sentence denotes Clinical and Diagnostic Perspective of COVID-19 Associated with Fungal Co-infections
T41 85-175 Sentence denotes As the ongoing COVID-19 pandemic, more and more experts are aware of fungal co-infections.
T42 176-301 Sentence denotes The French High Council for Public Health recommended to systematically screen for fungal pathogens in COVID-19 patients [6].
T43 302-528 Sentence denotes Lanjuan Li academician and her colleagues who have accumulated experience with severe COVID-19 treatment, reminded clinicians should focus on patients’ fungal infections, especially severely ill or immunocompromised ones [22].
T44 529-648 Sentence denotes At the early phase of the disease or with extrapulmonary fungal infections, it may present with atypical chest imaging.
T45 649-1255 Sentence denotes Hence, it is necessary for severely ill patients to receive fungal pathogens surveillance, including (i) etiological examination: direct microscopy and culture; (ii) histopathology; (iii) serology: antigen and antibody, (1,3)-β-d-glucan (BDG) [23] and galactomannan (GM) detection by serum are also need to be tested for suspicious patients, while bronchoalveolar lavage fluid (BALF) and tracheal aspirate (TA) sampling for culture and biomarker testing should be performed under well-protected conditions due to the risk of aerosol spreading and health care worker infections [24]; (iv) PCR-based methods:
T46 1256-1395 Sentence denotes Real-time polymerase chain reaction (PCR) techniques and molecular identification can be performed to identify pathogens if necessary [25].
T47 1396-1526 Sentence denotes After identifying the pathogen, the antifungal susceptibility testing (AST) can be performed to select sensitive antifungal drugs.
T48 1527-1594 Sentence denotes If the AST cannot be carried out, it should be treated empirically.
T49 1595-1702 Sentence denotes The main fungal pathogens for fungal co-infections in severe COVID-19 patients are Aspergillus and Candida.
T50 1703-1834 Sentence denotes Other infrequent opportunistic pathogenic fungus caused lung infections also need to be considered, such as Mucor and Cryptococcus.
T51 1836-1863 Sentence denotes Invasive Aspergillosis (IA)
T52 1864-2007 Sentence denotes Aspergillus species could be an important cause of life-threatening infection in COVID-19 patients, especially in those with high risk factors.
T53 2008-2326 Sentence denotes The potential risk factors for the patients include GC use, prolonged neutropenia, chronic obstructive pulmonary disease (COPD), allogeneic hematopoietic stem cell transplant (allo-HSCT) [26], solid organ transplant (SOT) [27], inherited immunodeficiencies, hemopoietic malignancy (HM), cystic fibrosis (CF) [28], etc.
T54 2327-2586 Sentence denotes The diagnosis of IA requires a microbiologic and/or histopathologic evidence, although specimen acquisition is challenging in many patients because lung biopsy might be contraindicated in patients with coagulation disorders or severe respiratory failure [13].
T55 2587-3065 Sentence denotes Histopathologic examination mainly rely on finding special fungal stains on lung fluid or tissue when a fungal infection is suspected and may reveal the characteristic acute angle branching septate hyphae of Aspergillus spp., and Grocott-Gomori’s methenamine-silver stain (GMS) and periodic acid-Schiff (PAS) stains of fixed tissue will helpful, while it is difficult to distinguish Aspergillus spp. from other filamentous fungi such as Fusarium spp. and Scedosporium spp. [29].
T56 3066-4415 Sentence denotes Therefore, it is necessary to have a definitive confirmation by culture or nonculture technique, including (i) direct microscopic examination with the optical brightener methods, Calcofluor or Blankophor, which may increase the sensitivity and specificity for detecting Aspergillus-like features; (ii) culture on fungal-specific media at 37 °C for 2–5 days, if positive, morphological features of Aspergillus can be identified under the microscope or the DNA sequencing may be used in reference laboratories to identify the species accurately, but usually culture yield is low and a negative result does not exclude the diagnosis of IA; (iii) molecular assays targeting ribosomal DNA (rDNA) sequences can also be used for detection of Aspergillus in tissues or BALF, especially PCR-based assays can be used to detect Aspergillus spp. and CYP51A resistance mutations in A. fumigatus, although these methods have not been standardized or limited by laboratory conditions or proven commercial reagents in some countries [30]; (iv) serum and BALF GM testing are also recommended as an early and accurate marker using less invasive techniques for the diagnosis, especially in neutropenic patients, with advantages of less injury and time-efficient, though sometimes this test in blood samples are less sensitive than cultures of respiratory samples [25].
T57 4416-4699 Sentence denotes The treatment recommendations can be supported by the 2016 Update guideline by the Infectious Diseases Society of America that the prophylaxis, therapeutic medication, combined, and alternative medication of aspergillus infection have been given more detailed guidance opinions [30].
T58 4700-4924 Sentence denotes Generally, drugs recommended for the treatment and prophylaxis of IA include triazoles (itraconazole, voriconazole, posaconazole, esaconazole), Amphotericin B and its liposomes and echinococcins (micafungin or carpofenjing).
T59 4925-5114 Sentence denotes Most patients can choose triazole drugs to treat IA, however, therapeutic drug monitoring (TDM) is recommended and the interaction between azoles and other drugs should be fully considered.
T60 5116-5141 Sentence denotes Invasive Candidiasis (IC)
T61 5142-5471 Sentence denotes For the severe COVID-19 patients who have more opportunities to be treat with broad-spectrum antibacterial drugs, parenteral nutrition and invasive examinations, or the patients accompanied with prolonged neutropenia and other immune impairment factors, the risk of infection with Candida species may significantly increase [31].
T62 5472-5860 Sentence denotes Diagnosis of IC depends on culture methods including culture of blood or other samples collected under sterile conditions which are usually considered as gold standards for IC, and nonculture diagnostic tests including mannan and antimannan IgG tests, C. albicans germ tube antibody (CAGTA), BDG and PCR-based assays, which are now entering clinical practice as adjuncts to cultures [32].
T63 5861-6388 Sentence denotes There are mainly two disadvantages about blood culture, on the one hand, the blood culture time is long, because the average positive alarm time is 2–3 days (range 1 to ≥ 7 days), plus identification and susceptibility test duration 4 to 6 days, on the other hand, it is not sensitive than PCR with much lower detection limit when Candida concentration is ≤ 1 CFU/mL and easy to have failure to detect in extremely low concentrations of candidiasis, intermittent candidiasis or deep Candida infection has not entered the blood.
T64 6389-6536 Sentence denotes Hence, several nonculture diagnostic tests are recommended, but also there is widespread uncertainty about their utility in clinical practice [31].
T65 6537-6814 Sentence denotes BDG is a major cell wall constituent of Candida and most pathogenic fungi, excluding Cryptococcus species, Blastomyces species, and Mucorales, which is widely used in clinical and well recommended by detecting serum, but cannot distinguish between Candida and other fungi [25].
T66 6815-7005 Sentence denotes Besides, mannan and antimannan IgG tests, CAGTA are employed at many European centers, and higher sensitivity and specificity by a combination with mannan/antimannan assay are observed [33].
T67 7006-7283 Sentence denotes There are promising PCR tests, including multiplex-PCR platforms, at the same time, it exists some limitations for a lack of multicenter validation of assay performance, so there are no FDA-cleared PCR assays for Candida, but commercial and in-house tests are widely available.
T68 7284-7445 Sentence denotes Further, T2 magnetic resonance is also can be used by amplifying and detecting Candida DNA, but its feasibility in early diagnosis of candidemia remains unclear.
T69 7446-7784 Sentence denotes MALDI-TOF technology is available in more hospitals with the biggest advantage of its promptness taking no more than 5 min to identify a microorganism from isolated colonies, even researchers have developed protocols to identify yeasts directly from positive blood culture bottles within half an hour without performing a subculture [32].
T70 7785-8074 Sentence denotes Overall, not only it is necessary to fully realize the benefits of combining culture and nonculture methods, but also, clinicians must take the types of IC, the strengths and limitations of each assay and the context of the clinical setting into account to have a judicious interpretation.
T71 8075-8234 Sentence denotes Besides, susceptibility test is recommended for all blood-stream and other clinically relevant Candida isolates, especially for C. glabrata or C. parapsilosis.
T72 8235-8483 Sentence denotes The treatment recommendations can be supported by the 2016 Update guideline by the Infectious Diseases Society of America that the therapeutic and alternative medication of candidiasis infection have been given more detailed guidance opinions [34].
T73 8484-8796 Sentence denotes Generally, patients who are suspected or confirmed with IC should be treated with echinocandin (caspofungin, micafungin, and anidulafungin), azoles (fluconazole, voriconazole, itraconazole), and Amphotericin B and its liposomes, what’s more, TDM for azoles should be used to optimize efficacy and limit toxicity.
T74 8798-8819 Sentence denotes Invasive Mucormycosis
T75 8820-8965 Sentence denotes COVID-19 patients with trauma, diabetes mellitus, GC use, HM, prolonged neutropenia, allo-HSCT, SOT are more likely to develop mucormycosis [35].
T76 8966-9224 Sentence denotes Mucormycosis is usually suspected based on results of direct microscopy or plus fluorescent brighteners from clinical specimens such as sputum, BALF, and skin lesions that Mucorales hyphae are non-septate or pauci-septatethe with a variable width of 6–16 μm.
T77 9225-9385 Sentence denotes To confirm the diagnosis, non-pigmented hyphae showing tissue invasion should be shown in tissue sections stained with hematoxylin–eosin (HE), PAS, or GMS [36].
T78 9386-9481 Sentence denotes Culture of specimens is strongly recommended for identification of genus and species, also AST.
T79 9482-9755 Sentence denotes What’s more, it is suggested to be cultured at 30 °C and 37 °C separately that typically cottony white or grayish black colony usually will be found, afterward morphological identification of fungi or DNA sequencing based on bar code genes, such as 18S, ITS, 28 s, or rDNA.
T80 9756-9912 Sentence denotes MALDI-TOF identification is just moderately supported because it depends mainly on in-house databases, and many laboratories do not have this capacity [37].
T81 9913-10123 Sentence denotes Further, it is promising to detect fungi DNA, in serum as well as in other body fluids, even in paraffin-embedded tissue, however, because of lack of standardization supported it is only with moderate strength.
T82 10124-10480 Sentence denotes The treatment recommendations can be supported by the global guideline for the diagnosis and management of mucormycosis in 2019 by European Confederation of Medical Mycology (ECMM) and Mycoses Study Group Education and Research Consortium that the therapeutic and alternative medication of mucormycosis have been given more detailed guidance opinions [35].
T83 10481-10631 Sentence denotes Generally, it strongly supports an early complete surgical treatment for mucormycosis whenever possible, in addition to systemic antifungal treatment.
T84 10632-10772 Sentence denotes In neutropenic patients, those with graft-versus-host disease or high risk factor, primary prophylaxis with posaconazole may be recommended.
T85 10773-10978 Sentence denotes Amphotericin B lipid complex, liposomal Amphotericin B and posaconazole oral suspension are treated as the first-line antifungal monotherapy, while isavuconazole is strongly supported as salvage treatment.
T86 10979-11113 Sentence denotes There are no convincing data to guide the use of antifungal combination therapy of polyenes and azoles or polyenes plus echinocandins.
T87 11115-11138 Sentence denotes Invasive Cryptococcosis
T88 11139-11394 Sentence denotes COVID-19 patients with human immunodeficiency virus (HIV) infection accompanied by CD4 + T-lymphocyte count < 200 cells/μL, allo-HSCT, SOT, or other immune impaired are susceptible to cryptococcosis which predominantly present as meningoencephalitis [38].
T89 11395-11658 Sentence denotes Given the complexities surrounding the diagnosis of cryptococcosis and identification of Cryptococcus species including C. neoformans and C. gattii species, the diagnosis of cryptococcosis is usually based on a combination of clinical and laboratory confirmation.
T90 11659-11783 Sentence denotes The methods used to confirm the infection are culture, direct microscopy, histopathology, serology, and molecular detection.
T91 11784-12026 Sentence denotes To diagnose cryptococcosis, specimen from cerebrospinal fluid (CSF) can be mixed with India ink and observed under a microscope that the distinctive structure for Cryptococcus spp. with narrow budding encapsulated yeasts usually can be found.
T92 12027-12154 Sentence denotes Samples for culture should be placed on Sabouraud dextrose agar at 30 °C for 7 days, in aerobic conditions, and observed daily.
T93 12155-12252 Sentence denotes Moreover, cultures from patients receiving systemic antifungal therapy might need longer to grow.
T94 12253-12300 Sentence denotes Cryptococcus appears as mucoid creamy colonies.
T95 12301-12438 Sentence denotes Capsular polysaccharides of Cryptococcus can be detected and quantified from body fluids such as serum, CSF, BAL, or pathological tissue.
T96 12439-12637 Sentence denotes Three formats of cryptococcal antigen (CrAg) detection tests are currently available: the latex agglutination test (LAT), the enzyme-linked immunoassay (EIA), and the lateral flow immunoassay (LFA).
T97 12638-12788 Sentence denotes These methods are rapid, sensitive, and specific, but have not been standardized for respiratory specimens such as BAL, pleural fluid, or sputum [32].
T98 12789-12942 Sentence denotes Molecular detection of Cryptococcus is required in specific situations where other diagnostic tools have failed to confirm a diagnosis of cryptococcosis.
T99 12943-13102 Sentence denotes These molecular methods include pan-fungal PCR, DNA sequencing for identification, multiplex PCR, isothermal amplification method, and probe-based microarrays.
T100 13103-13261 Sentence denotes Once a diagnosis cryptococcosis is made, a lumbar puncture and cerebrospinal fluid (CSF) examination (including antigen) are recommended in all patients [39].
T101 13262-13355 Sentence denotes Cryptococcus can disseminate into the central nervous system causing cryptococcal meningitis.
T102 13356-13646 Sentence denotes The treatment recommendations can be supported by guidelines for the diagnosis, prevention, and management of cryptococcal disease in HIV-infected adults, adolescents, and children in 2018 by World Health Organization (from: https://www.who.int/hiv/pub/guidelines/cryptococcal-disease/en/).
T103 13647-14014 Sentence denotes Generally, the following is recommended as the preferred regimen: (i) Induction phase for amphotericin B deoxycholate and + flucytosine, followed by fluconazole; alternative options for fluconazole + flucytosine or amphotericin B deoxycholate + fluconazole. (ii) Consolidation phase for fluconazole. (iii) Maintenance (or secondary prophylaxis) phase for fluconazole.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T10 2078-2089 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T11 2091-2128 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T12 2130-2134 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T13 2246-2264 Phenotype denotes immunodeficiencies http://purl.obolibrary.org/obo/HP_0002721
T14 2561-2580 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T15 5347-5358 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T16 8851-8868 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T17 8892-8903 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T18 11168-11184 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T19 13331-13354 Phenotype denotes cryptococcal meningitis http://purl.obolibrary.org/obo/HP_0032160

2_test

Id Subject Object Predicate Lexical cue
32737747-32334948-73473607 298-299 32334948 denotes 6
32737747-32275128-73473608 524-526 32275128 denotes 22
32737747-28378239-73473609 893-895 28378239 denotes 23
32737747-32395423-73473610 1227-1229 32395423 denotes 24
32737747-28124219-73473611 2196-2198 28124219 denotes 26
32737747-32233057-73473612 2231-2233 32233057 denotes 27
32737747-32303430-73473613 2317-2319 32303430 denotes 28
32737747-32687390-73473614 2582-2584 32687390 denotes 13
32737747-22517788-73473615 3061-3063 22517788 denotes 29
32737747-27365388-73473616 4084-4086 27365388 denotes 30
32737747-27365388-73473617 4695-4697 27365388 denotes 30
32737747-29444828-73473618 5467-5469 29444828 denotes 31
32737747-28882009-73473619 5856-5858 28882009 denotes 32
32737747-29444828-73473620 6532-6534 29444828 denotes 31
32737747-21143834-73473621 7001-7003 21143834 denotes 33
32737747-28882009-73473622 7780-7782 28882009 denotes 32
32737747-26679628-73473623 8479-8481 26679628 denotes 34
32737747-31699664-73473624 8961-8963 31699664 denotes 35
32737747-29538730-73473625 9381-9383 29538730 denotes 36
32737747-30203997-73473626 9908-9910 30203997 denotes 37
32737747-31699664-73473627 10476-10478 31699664 denotes 35
32737747-30329097-73473628 11390-11392 30329097 denotes 38
32737747-28882009-73473629 12784-12786 28882009 denotes 32
32737747-29663539-73473630 13257-13259 29663539 denotes 39