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PMC:7394275 / 3066-4415 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T55 265-271 NCBITaxon:4751 denotes fungal
T56 381-389 SP_7 denotes COVID-19
T57 495-500 NCBITaxon:4751 denotes fungi
T58 563-571 SP_7 denotes COVID-19
T59 629-635 NCBITaxon:4751 denotes fungal
T60 669-680 NCBITaxon:5478 denotes Aspergillus
T61 681-687 NCBITaxon:5059 denotes flavus
T62 701-717 NCBITaxon:5478 denotes Candida glabrata
T63 737-739 NCBITaxon:7719 denotes C.
T64 740-748 NCBITaxon:8296 denotes albicans
T65 804-810 NCBITaxon:4751 denotes fungal
T66 877-888 NCBITaxon:31032 denotes . fumigatus
T67 893-895 NCBITaxon:7719 denotes C.
T68 896-904 NCBITaxon:8296 denotes albicans
T69 996-1004 SP_7 denotes COVID-19
T70 1049-1058 NCBITaxon:2 denotes bacterial
T71 1062-1068 NCBITaxon:4751 denotes fungal
T72 1168-1178 CHEBI:67079;CHEBI:67079 denotes antifungal
T73 1309-1315 NCBITaxon:4751 denotes fungal
T74928 265-271 NCBITaxon:4751 denotes fungal
T11317 381-389 SP_7 denotes COVID-19
T56598 495-500 NCBITaxon:4751 denotes fungi
T39068 563-571 SP_7 denotes COVID-19
T91984 629-635 NCBITaxon:4751 denotes fungal
T17638 669-680 NCBITaxon:5478 denotes Aspergillus
T7070 681-687 NCBITaxon:5059 denotes flavus
T19630 701-717 NCBITaxon:5478 denotes Candida glabrata
T48978 737-739 NCBITaxon:7719 denotes C.
T7397 740-748 NCBITaxon:8296 denotes albicans
T45290 804-810 NCBITaxon:4751 denotes fungal
T26007 877-888 NCBITaxon:31032 denotes . fumigatus
T92391 893-895 NCBITaxon:7719 denotes C.
T56812 896-904 NCBITaxon:8296 denotes albicans
T69365 996-1004 SP_7 denotes COVID-19
T51502 1049-1058 NCBITaxon:2 denotes bacterial
T90238 1062-1068 NCBITaxon:4751 denotes fungal
T79560 1168-1178 CHEBI:67079;CHEBI:67079 denotes antifungal
T75018 1309-1315 NCBITaxon:4751 denotes fungal

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
161 390-398 Species denotes patients Tax:9606
162 572-580 Species denotes patients Tax:9606
163 669-687 Species denotes Aspergillus flavus Tax:5059
164 701-717 Species denotes Candida glabrata Tax:5478
165 737-748 Species denotes C. albicans Tax:5476
166 791-799 Species denotes patients Tax:9606
167 845-853 Species denotes patients Tax:9606
168 865-874 Species denotes A. flavus Tax:5059
169 876-888 Species denotes A. fumigatus Tax:746128
170 893-904 Species denotes C. albicans Tax:5476
171 1005-1013 Species denotes patients Tax:9606
172 1141-1149 Species denotes patients Tax:9606
173 1224-1232 Species denotes patients Tax:9606
174 1258-1266 Species denotes patients Tax:9606
187 272-285 Disease denotes co-infections MESH:D060085
188 381-389 Disease denotes COVID-19 MESH:C000657245
189 478-491 Disease denotes co-infections MESH:D060085
190 563-571 Disease denotes COVID-19 MESH:C000657245
191 636-645 Disease denotes infection MESH:D007239
192 804-823 Disease denotes fungal co-infection MESH:D060085
193 830-844 Disease denotes critically ill MESH:D016638
194 964-984 Disease denotes secondary infections MESH:D060085
195 996-1004 Disease denotes COVID-19 MESH:C000657245
196 1062-1078 Disease denotes fungal infection MESH:D009181
197 1309-1328 Disease denotes fungal co-infection MESH:D060085

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T51 275-285 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T52 381-389 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 481-500 Disease denotes infections of fungi http://purl.obolibrary.org/obo/MONDO_0002041
T54 563-571 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 629-645 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T56 636-645 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T57 701-717 Disease denotes Candida glabrata http://purl.obolibrary.org/obo/MONDO_0022636
T58 814-823 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T59 974-984 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T60 996-1004 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 1062-1078 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T62 1069-1078 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T63 1319-1328 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T17 781-783 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T18 827-829 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T19 865-866 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 876-877 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T21 941-942 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 1205-1207 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T23 1330-1332 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T6 1168-1178 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T7 1179-1187 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T20 64-204 Sentence denotes The title, abstract, and full text of related articles determined according to these search criteria were carefully reviewed by the authors.
T21 205-362 Sentence denotes Unfortunately, we have found very few articles reporting on fungal co-infections, not only that, some studies have not provided the details of the pathogens.
T22 363-505 Sentence denotes Even so, we found COVID-19 patients, especially severely ill ones or accompanied with immunocompromised state, had co-infections of fungi [7].
T23 506-753 Sentence denotes In China, Chen et al. performed fungal culture on all 99 COVID-19 patients at admission and found five (5%, 5/99) cases of fungal infection, including one case of Aspergillus flavus, one case of Candida glabrata and three cases of C. albicans [8].
T24 754-909 Sentence denotes Yang et al. found there (3/52, 5.8%) patients had fungal co-infection in 52 critically ill patients, including A. flavus, A. fumigatus and C. albicans [5].
T25 910-1087 Sentence denotes Other China studies have found a higher percentage of secondary infections (8–15%) in COVID-19 patients, but it is not clear whether it is bacterial or fungal infection [9, 10].
T26 1088-1334 Sentence denotes In addition, one study mentioned that 2.8% (31/1099) patients were treated with antifungal medicine, including 1.9% (18/926) non-severe patients and 7.5% (13/173) severe patients, but there was no etiological evidence of fungal co-infection [11].

2_test

Id Subject Object Predicate Lexical cue
32737747-31849894-73473591 502-503 31849894 denotes 7
32737747-32007143-73473592 750-751 32007143 denotes 8
32737747-32598906-73473593 906-907 32598906 denotes 5
32737747-31986264-73473594 1080-1081 31986264 denotes 9
32737747-32253449-73473595 1083-1085 32253449 denotes 10
32737747-32220206-73473596 1330-1332 32220206 denotes 11