> top > docs > PMC:7394275 > spans > 17860-20076 > annotations

PMC:7394275 / 17860-20076 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T264 0-8 SP_7 denotes COVID-19
T265 23-28 SP_6;NCBITaxon:9606 denotes human
T266 46-51 NCBITaxon:10239 denotes virus
T267 83-86 PR:000001004 denotes CD4
T268 89-101 CL:0000084 denotes T-lymphocyte
T269 149-155 UBERON:0002405 denotes immune
T270 345-357 NCBITaxon:106841 denotes Cryptococcus
T271 358-365 NCBITaxon:species denotes species
T272 376-378 NCBITaxon:7719 denotes C.
T273 379-389 NCBITaxon:5478 denotes neoformans
T274 394-396 NCBITaxon:7719 denotes C.
T275 397-403 NCBITaxon:5478 denotes gattii
T276 404-411 NCBITaxon:species denotes species
T277 687-706 UBERON:0001359 denotes cerebrospinal fluid
T278 708-711 UBERON:0001359 denotes CSF
T279 808-820 NCBITaxon:106841 denotes Cryptococcus
T280 838-845 GO:0007114 denotes budding
T281 947-951 CHEBI:2509;CHEBI:2509 denotes agar
T282 1108-1112 GO:0040007 denotes grow
T283 1171-1186 CHEBI:18154;CHEBI:18154 denotes polysaccharides
T284 1239-1250 UBERON:0006314 denotes body fluids
T285 1259-1264 UBERON:0001977 denotes serum
T286 1292-1298 UBERON:0000479 denotes tissue
T287 1330-1337 CHEBI:59132;CHEBI:59132 denotes antigen
T288 1339-1343 PR:000003817 denotes CrAg
T289 1584-1595 UBERON:0001004 denotes respiratory
T290 1619-1632 UBERON:0001087 denotes pleural fluid
T291 1637-1643 UBERON:0007311 denotes sputum
T292 1840-1846 NCBITaxon:4751 denotes fungal
T293 2027-2046 UBERON:0001359 denotes cerebrospinal fluid
T294 2076-2083 CHEBI:59132;CHEBI:59132 denotes antigen
T295 2161-2183 UBERON:0001017 denotes central nervous system
T3792 0-8 SP_7 denotes COVID-19
T4250 23-28 SP_6;NCBITaxon:9606 denotes human
T80532 46-51 NCBITaxon:10239 denotes virus
T69080 83-86 PR:000001004 denotes CD4
T57693 89-101 CL:0000084 denotes T-lymphocyte
T48016 149-155 UBERON:0002405 denotes immune
T2122 345-357 NCBITaxon:106841 denotes Cryptococcus
T52255 358-365 NCBITaxon:species denotes species
T50703 376-378 NCBITaxon:7719 denotes C.
T20343 379-389 NCBITaxon:5478 denotes neoformans
T17477 394-396 NCBITaxon:7719 denotes C.
T10330 397-403 NCBITaxon:5478 denotes gattii
T93842 404-411 NCBITaxon:species denotes species
T82098 687-706 UBERON:0001359 denotes cerebrospinal fluid
T15522 708-711 UBERON:0001359 denotes CSF
T58192 808-820 NCBITaxon:106841 denotes Cryptococcus
T54110 838-845 GO:0007114 denotes budding
T1942 947-951 CHEBI:2509;CHEBI:2509 denotes agar
T86453 1108-1112 GO:0040007 denotes grow
T63138 1171-1186 CHEBI:18154;CHEBI:18154 denotes polysaccharides
T61182 1239-1250 UBERON:0006314 denotes body fluids
T62464 1259-1264 UBERON:0001977 denotes serum
T61960 1292-1298 UBERON:0000479 denotes tissue
T30703 1330-1337 CHEBI:59132;CHEBI:59132 denotes antigen
T90969 1339-1343 PR:000003817 denotes CrAg
T24495 1584-1595 UBERON:0001004 denotes respiratory
T44771 1619-1632 UBERON:0001087 denotes pleural fluid
T43630 1637-1643 UBERON:0007311 denotes sputum
T49362 1840-1846 NCBITaxon:4751 denotes fungal
T52785 2027-2046 UBERON:0001359 denotes cerebrospinal fluid
T36771 2076-2083 CHEBI:59132;CHEBI:59132 denotes antigen
T28958 2161-2183 UBERON:0001017 denotes central nervous system

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T48 53-56 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T49 83-101 Body_part denotes CD4 + T-lymphocyte http://purl.org/sig/ont/fma/fma70572
T50 89-101 Body_part denotes T-lymphocyte http://purl.org/sig/ont/fma/fma62870
T51 114-119 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T52 687-706 Body_part denotes cerebrospinal fluid http://purl.org/sig/ont/fma/fma20935
T53 708-711 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T54 1171-1186 Body_part denotes polysaccharides http://purl.org/sig/ont/fma/fma82746
T55 1239-1250 Body_part denotes body fluids http://purl.org/sig/ont/fma/fma280556
T56 1239-1243 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T57 1259-1264 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T58 1266-1269 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T59 1292-1298 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T60 1619-1632 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T61 1637-1643 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T62 1852-1855 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T63 2027-2046 Body_part denotes cerebrospinal fluid http://purl.org/sig/ont/fma/fma20935
T64 2048-2051 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T65 2161-2183 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T30 687-706 Body_part denotes cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0001359
T31 1259-1264 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T32 1292-1298 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T33 1619-1632 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T34 1637-1643 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T35 2027-2046 Body_part denotes cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0001359
T36 2161-2183 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T37 2169-2183 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
553 83-86 Gene denotes CD4 Gene:920
554 120-122 Gene denotes μL Gene:4591
555 9-17 Species denotes patients Tax:9606
556 376-389 Species denotes C. neoformans Tax:5207
557 394-403 Species denotes C. gattii Tax:552467
558 859-865 Species denotes yeasts Tax:4932
559 1040-1048 Species denotes patients Tax:9606
560 1673-1688 Species denotes Cryptococcus is Tax:1198465
561 2108-2116 Species denotes patients Tax:9606
562 345-357 Species denotes Cryptococcus Tax:5207
563 808-820 Species denotes Cryptococcus Tax:5207
564 1114-1126 Species denotes Cryptococcus Tax:5207
565 1190-1202 Species denotes Cryptococcus Tax:5207
566 2123-2135 Species denotes Cryptococcus Tax:5207
567 731-740 Chemical denotes India ink MESH:C028433
568 928-951 Chemical denotes Sabouraud dextrose agar
569 0-8 Disease denotes COVID-19 MESH:C000657245
570 23-67 Disease denotes human immunodeficiency virus (HIV) infection MESH:D015658
571 184-198 Disease denotes cryptococcosis MESH:D003453
572 230-249 Disease denotes meningoencephalitis MESH:D008590
573 308-322 Disease denotes cryptococcosis MESH:D003453
574 430-444 Disease denotes cryptococcosis MESH:D003453
575 552-561 Disease denotes infection MESH:D007239
576 657-671 Disease denotes cryptococcosis MESH:D003453
577 1788-1802 Disease denotes cryptococcosis MESH:D003453
578 1981-1995 Disease denotes cryptococcosis MESH:D003453
579 2192-2215 Disease denotes cryptococcal meningitis MESH:D016919

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T171 0-8 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T172 29-45 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T173 52-67 Disease denotes (HIV) infection http://purl.obolibrary.org/obo/MONDO_0005109
T174 58-67 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T175 184-198 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T176 230-249 Disease denotes meningoencephalitis http://purl.obolibrary.org/obo/MONDO_0005845
T177 308-322 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T178 430-444 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T179 552-561 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T180 657-671 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T181 1788-1802 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T182 1981-1995 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T183 2192-2215 Disease denotes cryptococcal meningitis http://purl.obolibrary.org/obo/MONDO_0005723
T184 2205-2215 Disease denotes meningitis http://purl.obolibrary.org/obo/MONDO_0004796|http://purl.obolibrary.org/obo/MONDO_0021108

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T105 23-28 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T106 46-51 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T107 83-86 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T108 114-119 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T109 465-466 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 760-761 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 955-966 http://purl.obolibrary.org/obo/CLO_0001282 denotes 30 °C for 7
T112 1239-1250 http://purl.obolibrary.org/obo/UBERON_0006314 denotes body fluids
T113 1355-1360 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T114 1410-1414 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T115 1416-1419 http://purl.obolibrary.org/obo/CLO_0007247 denotes LAT
T116 1773-1774 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 1836-1839 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes pan
T118 1969-1970 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 2005-2006 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 2161-2183 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T121 2161-2183 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T122 2161-2183 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T104 938-946 Chemical denotes dextrose http://purl.obolibrary.org/obo/CHEBI_17634
T105 947-951 Chemical denotes agar http://purl.obolibrary.org/obo/CHEBI_2509
T106 1068-1078 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T107 1171-1186 Chemical denotes polysaccharides http://purl.obolibrary.org/obo/CHEBI_18154
T108 1271-1274 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T109 1330-1337 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T110 1493-1496 Chemical denotes LFA http://purl.obolibrary.org/obo/CHEBI_139482
T111 1614-1617 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T112 1852-1855 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T113 1939-1944 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T114 2076-2083 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 838-845 http://purl.obolibrary.org/obo/GO_0007114 denotes budding
T4 1396-1409 http://purl.obolibrary.org/obo/GO_0007157 denotes agglutination
T5 1396-1409 http://purl.obolibrary.org/obo/GO_0000752 denotes agglutination

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T88 0-255 Sentence denotes COVID-19 patients with human immunodeficiency virus (HIV) infection accompanied by CD4 + T-lymphocyte count < 200 cells/μL, allo-HSCT, SOT, or other immune impaired are susceptible to cryptococcosis which predominantly present as meningoencephalitis [38].
T89 256-519 Sentence denotes Given the complexities surrounding the diagnosis of cryptococcosis and identification of Cryptococcus species including C. neoformans and C. gattii species, the diagnosis of cryptococcosis is usually based on a combination of clinical and laboratory confirmation.
T90 520-644 Sentence denotes The methods used to confirm the infection are culture, direct microscopy, histopathology, serology, and molecular detection.
T91 645-887 Sentence denotes To diagnose cryptococcosis, specimen from cerebrospinal fluid (CSF) can be mixed with India ink and observed under a microscope that the distinctive structure for Cryptococcus spp. with narrow budding encapsulated yeasts usually can be found.
T92 888-1015 Sentence denotes Samples for culture should be placed on Sabouraud dextrose agar at 30 °C for 7 days, in aerobic conditions, and observed daily.
T93 1016-1113 Sentence denotes Moreover, cultures from patients receiving systemic antifungal therapy might need longer to grow.
T94 1114-1161 Sentence denotes Cryptococcus appears as mucoid creamy colonies.
T95 1162-1299 Sentence denotes Capsular polysaccharides of Cryptococcus can be detected and quantified from body fluids such as serum, CSF, BAL, or pathological tissue.
T96 1300-1498 Sentence denotes Three formats of cryptococcal antigen (CrAg) detection tests are currently available: the latex agglutination test (LAT), the enzyme-linked immunoassay (EIA), and the lateral flow immunoassay (LFA).
T97 1499-1649 Sentence denotes These methods are rapid, sensitive, and specific, but have not been standardized for respiratory specimens such as BAL, pleural fluid, or sputum [32].
T98 1650-1803 Sentence denotes Molecular detection of Cryptococcus is required in specific situations where other diagnostic tools have failed to confirm a diagnosis of cryptococcosis.
T99 1804-1963 Sentence denotes These molecular methods include pan-fungal PCR, DNA sequencing for identification, multiplex PCR, isothermal amplification method, and probe-based microarrays.
T100 1964-2122 Sentence denotes Once a diagnosis cryptococcosis is made, a lumbar puncture and cerebrospinal fluid (CSF) examination (including antigen) are recommended in all patients [39].
T101 2123-2216 Sentence denotes Cryptococcus can disseminate into the central nervous system causing cryptococcal meningitis.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T18 29-45 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T19 2192-2215 Phenotype denotes cryptococcal meningitis http://purl.obolibrary.org/obo/HP_0032160

2_test

Id Subject Object Predicate Lexical cue
32737747-30329097-73473628 251-253 30329097 denotes 38
32737747-28882009-73473629 1645-1647 28882009 denotes 32
32737747-29663539-73473630 2118-2120 29663539 denotes 39