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PMC:7394275 / 1334-22186 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T19 25-33 SP_7 denotes COVID-19
T20 85-90 SP_6;NCBITaxon:9606 denotes human
T21 94-99 SP_6;NCBITaxon:9606 denotes human
T22 121-132 NCBITaxon:11118 denotes coronavirus
T23 147-155 SP_7 denotes COVID-19
T24 168-180 SP_7 denotes severe acute
T25 181-192 SP_7;UBERON:0001004 denotes respiratory
T26 193-215 SP_7 denotes syndrome coronavirus 2
T27 217-227 SP_7 denotes SARS-CoV-2
T28 313-321 SP_7 denotes COVID-19
T29 435-441 GO:0016265 denotes deaths
T30 457-465 SP_10 denotes SARS-CoV
T31 470-514 SP_9 denotes Middle East Respiratory Syndrome Coronavirus
T32 516-524 SP_9 denotes MERS-CoV
T33 527-537 SP_7 denotes SARS-CoV-2
T34 563-574 UBERON:0001004 denotes respiratory
T35 669-677 UBERON:0003215 denotes alveolar
T36 721-729 SP_7 denotes COVID-19
T37 751-768 CHEBI:35705;CHEBI:35705 denotes immunosuppression
T38 788-791 PR:000001004 denotes CD4
T39 806-813 CL:0000084 denotes T cells
T40 893-912 UBERON:0007221 denotes intensive care unit
T41 1053-1059 NCBITaxon:4751 denotes fungal
T42 1117-1125 SP_7 denotes COVID-19
T43 1155-1161 NCBITaxon:4751 denotes fungal
T44 1301-1309 SP_7 denotes COVID-19
T45 1347-1353 NCBITaxon:4751 denotes fungal
T46 1371-1379 SP_7 denotes COVID-19
T47 1466-1471 NCBITaxon:4751 denotes fungi
T48 1477-1483 NCBITaxon:4751 denotes fungus
T49 1489-1495 NCBITaxon:4751 denotes fungal
T50 1520-1526 NCBITaxon:4751 denotes fungal
T51 1567-1575 SP_7 denotes COVID-19
T52 1581-1591 SP_7 denotes SARS-CoV-2
T53 1597-1606 SP_7 denotes 2019-nCoV
T54 1623-1634 NCBITaxon:11118 denotes coronavirus
T55 1997-2003 NCBITaxon:4751 denotes fungal
T56 2113-2121 SP_7 denotes COVID-19
T57 2227-2232 NCBITaxon:4751 denotes fungi
T58 2295-2303 SP_7 denotes COVID-19
T59 2361-2367 NCBITaxon:4751 denotes fungal
T60 2401-2412 NCBITaxon:5478 denotes Aspergillus
T61 2413-2419 NCBITaxon:5059 denotes flavus
T62 2433-2449 NCBITaxon:5478 denotes Candida glabrata
T63 2469-2471 NCBITaxon:7719 denotes C.
T64 2472-2480 NCBITaxon:8296 denotes albicans
T65 2536-2542 NCBITaxon:4751 denotes fungal
T66 2609-2620 NCBITaxon:31032 denotes . fumigatus
T67 2625-2627 NCBITaxon:7719 denotes C.
T68 2628-2636 NCBITaxon:8296 denotes albicans
T69 2728-2736 SP_7 denotes COVID-19
T70 2781-2790 NCBITaxon:2 denotes bacterial
T71 2794-2800 NCBITaxon:4751 denotes fungal
T72 2900-2910 CHEBI:67079;CHEBI:67079 denotes antifungal
T73 3041-3047 NCBITaxon:4751 denotes fungal
T74 3184-3192 SP_7 denotes COVID-19
T75 3213-3222 UBERON:0002048 denotes pulmonary
T76 3525-3533 SP_7 denotes COVID-19
T77 3564-3567 NCBITaxon:9606 denotes man
T78 3602-3610 UBERON:0003126 denotes tracheal
T79 3669-3677 SP_7 denotes COVID-19
T80 3712-3716 SP_10 denotes SARS
T81 3755-3763 SP_10 denotes SARS-CoV
T82 3768-3778 SP_7 denotes SARS-CoV-2
T83 3798-3805 NCBITaxon:species denotes species
T84 3901-3905 SP_10 denotes SARS
T85 3941-3947 NCBITaxon:4751 denotes fungal
T86 3961-3965 SP_10 denotes SARS
T87 4069-4075 NCBITaxon:4751 denotes fungal
T88 4108-4113 GO:0016265 denotes death
T89 4118-4122 SP_10 denotes SARS
T90 4174-4179 GO:0016265 denotes death
T91 4297-4303 NCBITaxon:4751 denotes fungal
T92 4569-4575 NCBITaxon:4751 denotes fungal
T93 4592-4600 SP_7 denotes COVID-19
T94 4694-4702 SP_7 denotes COVID-19
T95 4728-4734 UBERON:0007311 denotes sputum
T96 4735-4741 NCBITaxon:4751 denotes fungal
T97 4807-4813 NCBITaxon:4751 denotes fungus
T98 4828-4834 UBERON:0007311 denotes sputum
T99 4835-4841 NCBITaxon:4751 denotes fungal
T100 4921-4932 UBERON:0001004 denotes respiratory
T101 4945-4953 SP_7 denotes COVID-19
T102 5004-5013 NCBITaxon:2 denotes bacterium
T103 5080-5091 CHEBI:33282;CHEBI:33282 denotes antibiotics
T104 5116-5122 NCBITaxon:4751 denotes fungal
T105 5192-5196 SP_10 denotes SARS
T106 5343-5351 SP_7 denotes COVID-19
T107 5367-5373 NCBITaxon:4751 denotes fungal
T108 5426-5434 SP_7 denotes COVID-19
T109 5487-5495 SP_7 denotes COVID-19
T110 5541-5547 NCBITaxon:4751 denotes fungal
T111 5646-5652 NCBITaxon:4751 denotes fungal
T112 5666-5674 SP_7 denotes COVID-19
T113 5775-5783 SP_7 denotes COVID-19
T114 5841-5847 NCBITaxon:4751 denotes fungal
T115 5958-5972 UBERON:0000922 denotes extrapulmonary
T116 5973-5979 NCBITaxon:4751 denotes fungal
T117 6021-6026 UBERON:0001443 denotes chest
T118 6096-6102 NCBITaxon:4751 denotes fungal
T119 6113-6125 GO:0065007 denotes surveillance
T120 6234-6241 CHEBI:59132;CHEBI:59132 denotes antigen
T121 6246-6254 GO:0042571 denotes antibody
T122 6266-6272 CHEBI:37671;CHEBI:37671 denotes glucan
T123 6320-6325 UBERON:0001977 denotes serum
T124 6384-6399 UBERON:0002186;BV_4 denotes bronchoalveolar
T125 6400-6406 BV_4;UBERON:0004821 denotes lavage
T126 6407-6412 BV_4;UBERON:0006314 denotes fluid
T127 6414-6418 UBERON:0001348;BV_4 denotes BALF
T128 6424-6432 UBERON:0003126 denotes tracheal
T129 6896-6912 CHEBI:86327;CHEBI:86327 denotes antifungal drugs
T130 6991-6997 NCBITaxon:4751 denotes fungal
T131 7012-7018 NCBITaxon:4751 denotes fungal
T132 7043-7051 SP_7 denotes COVID-19
T133 7065-7076 NCBITaxon:5052 denotes Aspergillus
T134 7081-7088 NCBITaxon:5478 denotes Candida
T135 7132-7138 NCBITaxon:4751 denotes fungus
T136 7146-7150 UBERON:0002048 denotes lung
T137 7251-7262 NCBITaxon:5052 denotes Aspergillus
T138 7263-7270 NCBITaxon:species denotes species
T139 7302-7306 UBERON:0000104 denotes life
T140 7332-7340 SP_7 denotes COVID-19
T141 7498-7507 UBERON:0002048 denotes pulmonary
T142 7535-7548 GO:0030097;CL:0000037 denotes hematopoietic
T143 7549-7558 CL:0000037 denotes stem cell
T144 7594-7599 UBERON:0000062 denotes organ
T145 7653-7664 GO:0030097 denotes hemopoietic
T146 7862-7866 UBERON:0002048 denotes lung
T147 7916-7927 GO:0050817 denotes coagulation
T148 7948-7959 UBERON:0001004 denotes respiratory
T149 8050-8054 UBERON:0002048 denotes lung
T150 8055-8060 UBERON:0006314 denotes fluid
T151 8064-8070 UBERON:0000479 denotes tissue
T152 8078-8084 NCBITaxon:4751 denotes fungal
T153 8182-8193 NCBITaxon:5052 denotes Aspergillus
T154 8221-8232 CHEBI:17790;CHEBI:17790 denotes methenamine
T155 8256-8269 CHEBI:29149;CHEBI:29149 denotes periodic acid
T156 8299-8305 UBERON:0000479 denotes tissue
T157 8357-8368 NCBITaxon:5052 denotes Aspergillus
T158 8397-8402 NCBITaxon:4751 denotes fungi
T159 8411-8419 NCBITaxon:5506 denotes Fusarium
T160 8420-8424 NCBITaxon:species denotes spp.
T161 8429-8441 NCBITaxon:286 denotes Scedosporium
T162 8442-8445 NCBITaxon:species denotes spp
T163 8723-8734 NCBITaxon:5052 denotes Aspergillus
T164 8766-8772 NCBITaxon:4751 denotes fungal
T165 8850-8861 NCBITaxon:5052 denotes Aspergillus
T166 9123-9132 GO:0005840 denotes ribosomal
T167 9188-9199 NCBITaxon:5052 denotes Aspergillus
T168 9203-9210 UBERON:0000479 denotes tissues
T169 9214-9218 BV_4 denotes BALF
T170 9270-9281 NCBITaxon:5052 denotes Aspergillus
T171 9282-9285 NCBITaxon:species denotes spp
T172 9291-9297 PR:000006147 denotes CYP51A
T173 9322-9323 NCBITaxon:8296 denotes A
T174 9323-9334 NCBITaxon:31032 denotes . fumigatus
T175 9443-9451 CHEBI:33893;CHEBI:33893 denotes reagents
T176 9481-9486 UBERON:0001977 denotes serum
T177 9491-9495 BV_4 denotes BALF
T178 9727-9732 UBERON:0000178 denotes blood
T179 9777-9788 UBERON:0001004 denotes respiratory
T180 10098-10103 CHEBI:23888;CHEBI:23888 denotes drugs
T181 10164-10173 CHEBI:35727;CHEBI:35727 denotes triazoles
T182 10175-10187 CHEBI:6076;CHEBI:6076 denotes itraconazole
T183 10189-10201 CHEBI:10023;CHEBI:10023 denotes voriconazole
T184 10203-10215 CHEBI:64355;CHEBI:64355 denotes posaconazole
T185 10231-10245 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T186 10337-10345 CHEBI:35727;CHEBI:35727 denotes triazole
T187 10346-10351 CHEBI:23888;CHEBI:23888 denotes drugs
T188 10386-10390 CHEBI:23888;CHEBI:23888 denotes drug
T189 10451-10457 CHEBI:68452;CHEBI:68452 denotes azoles
T190 10468-10473 CHEBI:23888;CHEBI:23888 denotes drugs
T191 10544-10552 SP_7 denotes COVID-19
T192 10622-10641 CHEBI:36047;CHEBI:36047 denotes antibacterial drugs
T193 10756-10762 UBERON:0002405 denotes immune
T194 10810-10817 NCBITaxon:5478 denotes Candida
T195 10818-10825 NCBITaxon:species denotes species
T196 10923-10928 UBERON:0000178 denotes blood
T197 11078-11084 CHEBI:37684;CHEBI:37684 denotes mannan
T198 11100-11103 GO:0071735 denotes IgG
T199 11111-11113 NCBITaxon:7719 denotes C.
T200 11114-11122 NCBITaxon:8296 denotes albicans
T201 11133-11141 GO:0042571 denotes antibody
T202 11289-11294 UBERON:0000178 denotes blood
T203 11325-11330 UBERON:0000178 denotes blood
T204 11579-11586 NCBITaxon:5475 denotes Candida
T205 11731-11738 NCBITaxon:5478 denotes Candida
T206 11769-11774 UBERON:0000178 denotes blood
T207 11939-11948 GO:0005618 denotes cell wall
T208 11964-11971 NCBITaxon:5478 denotes Candida
T209 11992-11997 NCBITaxon:4751 denotes fungi
T210 12009-12021 NCBITaxon:106841 denotes Cryptococcus
T211 12022-12029 NCBITaxon:species denotes species
T212 12031-12042 NCBITaxon:229219 denotes Blastomyces
T213 12043-12050 NCBITaxon:species denotes species
T214 12056-12065 NCBITaxon:10090 denotes Mucorales
T215 12134-12139 UBERON:0001977 denotes serum
T216 12172-12179 NCBITaxon:5478 denotes Candida
T217 12190-12195 NCBITaxon:4751 denotes fungi
T218 12211-12217 CHEBI:37684;CHEBI:37684 denotes mannan
T219 12233-12236 GO:0071735 denotes IgG
T220 12350-12356 CHEBI:37684;CHEBI:37684 denotes mannan
T221 12606-12613 NCBITaxon:5475 denotes Candida
T222 12750-12757 NCBITaxon:5478 denotes Candida
T223 13092-13097 UBERON:0000178 denotes blood
T224 13514-13519 UBERON:0000178 denotes blood
T225 13519-13526 UBERON:0006314 denotes -stream
T226 13557-13564 NCBITaxon:5478 denotes Candida
T227 13565-13573 SO:0001060 denotes isolates
T228 13590-13601 NCBITaxon:5478 denotes C. glabrata
T229 13605-13607 NCBITaxon:5478 denotes C.
T230 13608-13620 NCBITaxon:7656 denotes parapsilosis
T231 13953-13965 CHEBI:57248;CHEBI:57248 denotes echinocandin
T232 14020-14031 CHEBI:46081;CHEBI:46081 denotes fluconazole
T233 14033-14045 CHEBI:10023;CHEBI:10023 denotes voriconazole
T234 14047-14059 CHEBI:6076;CHEBI:6076 denotes itraconazole
T235 14066-14080 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T236 14121-14127 CHEBI:68452;CHEBI:68452 denotes azoles
T237 14207-14215 SP_7 denotes COVID-19
T238 14489-14495 UBERON:0007311 denotes sputum
T239 14497-14501 BV_4 denotes BALF
T240 14642-14651 CHEBI:26130;CHEBI:26130 denotes pigmented
T241 14667-14673 UBERON:0000479 denotes tissue
T242 14702-14708 UBERON:0000479 denotes tissue
T243 14731-14742 CHEBI:51686;CHEBI:51686 denotes hematoxylin
T244 14840-14845 NCBITaxon:genus denotes genus
T245 14850-14857 NCBITaxon:species denotes species
T246 15061-15066 NCBITaxon:4751 denotes fungi
T247 15103-15108 SO:0000704 denotes genes
T248 15335-15340 NCBITaxon:4751 denotes fungi
T249 15349-15354 UBERON:0001977 denotes serum
T250 15375-15386 UBERON:0006314 denotes body fluids
T251 15414-15420 UBERON:0000479 denotes tissue
T252 16127-16139 CHEBI:64355;CHEBI:64355 denotes posaconazole
T253 16160-16174 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T254 16175-16180 CHEBI:18059;CHEBI:18059 denotes lipid
T255 16181-16188 GO:0032991 denotes complex
T256 16200-16214 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T257 16219-16231 CHEBI:64355;CHEBI:64355 denotes posaconazole
T258 16232-16236 UBERON:0000165 denotes oral
T259 16308-16321 CHEBI:85979;CHEBI:85979 denotes isavuconazole
T260 16449-16457 CHEBI:48121;CHEBI:48121 denotes polyenes
T261 16462-16468 CHEBI:68452;CHEBI:68452 denotes azoles
T262 16472-16480 CHEBI:48121;CHEBI:48121 denotes polyenes
T263 16486-16499 CHEBI:57248;CHEBI:57248 denotes echinocandins
T264 16526-16534 SP_7 denotes COVID-19
T265 16549-16554 SP_6;NCBITaxon:9606 denotes human
T266 16572-16577 NCBITaxon:10239 denotes virus
T267 16609-16612 PR:000001004 denotes CD4
T268 16615-16627 CL:0000084 denotes T-lymphocyte
T269 16675-16681 UBERON:0002405 denotes immune
T270 16871-16883 NCBITaxon:106841 denotes Cryptococcus
T271 16884-16891 NCBITaxon:species denotes species
T272 16902-16904 NCBITaxon:7719 denotes C.
T273 16905-16915 NCBITaxon:5478 denotes neoformans
T274 16920-16922 NCBITaxon:7719 denotes C.
T275 16923-16929 NCBITaxon:5478 denotes gattii
T276 16930-16937 NCBITaxon:species denotes species
T277 17213-17232 UBERON:0001359 denotes cerebrospinal fluid
T278 17234-17237 UBERON:0001359 denotes CSF
T279 17334-17346 NCBITaxon:106841 denotes Cryptococcus
T280 17364-17371 GO:0007114 denotes budding
T281 17473-17477 CHEBI:2509;CHEBI:2509 denotes agar
T282 17634-17638 GO:0040007 denotes grow
T283 17697-17712 CHEBI:18154;CHEBI:18154 denotes polysaccharides
T284 17765-17776 UBERON:0006314 denotes body fluids
T285 17785-17790 UBERON:0001977 denotes serum
T286 17818-17824 UBERON:0000479 denotes tissue
T287 17856-17863 CHEBI:59132;CHEBI:59132 denotes antigen
T288 17865-17869 PR:000003817 denotes CrAg
T289 18110-18121 UBERON:0001004 denotes respiratory
T290 18145-18158 UBERON:0001087 denotes pleural fluid
T291 18163-18169 UBERON:0007311 denotes sputum
T292 18366-18372 NCBITaxon:4751 denotes fungal
T293 18553-18572 UBERON:0001359 denotes cerebrospinal fluid
T294 18602-18609 CHEBI:59132;CHEBI:59132 denotes antigen
T295 18687-18709 UBERON:0001017 denotes central nervous system
T296 18890-18896 UBERON:0007023 denotes adults
T297 19124-19138 CHEBI:2682;CHEBI:2682 denotes amphotericin B
T298 19158-19169 CHEBI:5100;CHEBI:5100 denotes flucytosine
T299 19183-19194 CHEBI:46081;CHEBI:46081 denotes fluconazole
T300 19220-19231 CHEBI:46081;CHEBI:46081 denotes fluconazole
T301 19234-19245 CHEBI:5100;CHEBI:5100 denotes flucytosine
T302 19249-19263 CHEBI:2682;CHEBI:2682 denotes amphotericin B
T303 19264-19276 CHEBI:23614;CHEBI:23614 denotes deoxycholate
T304 19279-19290 CHEBI:46081;CHEBI:46081 denotes fluconazole
T305 19321-19332 CHEBI:46081;CHEBI:46081 denotes fluconazole
T306 19389-19400 CHEBI:46081;CHEBI:46081 denotes fluconazole
T307 19450-19454 SP_10 denotes SARS
T308 19520-19526 NCBITaxon:4751 denotes fungal
T309 19564-19572 SP_7 denotes COVID-19
T310 19620-19624 UBERON:0000104 denotes life
T311 19657-19665 SP_7 denotes COVID-19
T312 19682-19696 GO:0010467 denotes overexpression
T313 19751-19757 UBERON:0002405;GO:0006955 denotes immune
T314 19758-19766 GO:0006955 denotes response
T315 19782-19785 PR:000001004 denotes CD4
T316 19788-19789 CL:0000084 denotes T
T317 19800-19806 CL:0000084 denotes T cell
T318 19848-19854 NCBITaxon:4751 denotes fungal
T319 19879-19887 SP_7 denotes COVID-19
T320 20068-20074 NCBITaxon:4751 denotes fungal
T321 20208-20214 CHEBI:37671;CHEBI:37671 denotes glucan
T322 20216-20229 CHEBI:27680;CHEBI:27680 denotes galactomannan
T323 20541-20549 SP_7 denotes COVID-19
T324 20759-20767 SP_7 denotes COVID-19
T325 20833-20839 NCBITaxon:4751 denotes fungal
T52117 25-33 SP_7 denotes COVID-19
T87926 85-90 SP_6;NCBITaxon:9606 denotes human
T44317 94-99 SP_6;NCBITaxon:9606 denotes human
T51260 121-132 NCBITaxon:11118 denotes coronavirus
T60002 147-155 SP_7 denotes COVID-19
T53048 168-180 SP_7 denotes severe acute
T10983 181-192 SP_7;UBERON:0001004 denotes respiratory
T18020 193-215 SP_7 denotes syndrome coronavirus 2
T39408 217-227 SP_7 denotes SARS-CoV-2
T58688 313-321 SP_7 denotes COVID-19
T97901 435-441 GO:0016265 denotes deaths
T15306 457-465 SP_10 denotes SARS-CoV
T84834 470-514 SP_9 denotes Middle East Respiratory Syndrome Coronavirus
T47132 516-524 SP_9 denotes MERS-CoV
T93587 527-537 SP_7 denotes SARS-CoV-2
T30768 563-574 UBERON:0001004 denotes respiratory
T38817 669-677 UBERON:0003215 denotes alveolar
T68441 721-729 SP_7 denotes COVID-19
T85434 751-768 CHEBI:35705;CHEBI:35705 denotes immunosuppression
T96661 788-791 PR:000001004 denotes CD4
T91572 806-813 CL:0000084 denotes T cells
T27673 893-912 UBERON:0007221 denotes intensive care unit
T544 1053-1059 NCBITaxon:4751 denotes fungal
T63230 1117-1125 SP_7 denotes COVID-19
T67064 1155-1161 NCBITaxon:4751 denotes fungal
T8796 1301-1309 SP_7 denotes COVID-19
T90164 1347-1353 NCBITaxon:4751 denotes fungal
T78055 1371-1379 SP_7 denotes COVID-19
T56392 1466-1471 NCBITaxon:4751 denotes fungi
T2937 1477-1483 NCBITaxon:4751 denotes fungus
T7625 1489-1495 NCBITaxon:4751 denotes fungal
T97506 1520-1526 NCBITaxon:4751 denotes fungal
T76564 1567-1575 SP_7 denotes COVID-19
T86195 1581-1591 SP_7 denotes SARS-CoV-2
T83106 1597-1606 SP_7 denotes 2019-nCoV
T55582 1623-1634 NCBITaxon:11118 denotes coronavirus
T74928 1997-2003 NCBITaxon:4751 denotes fungal
T11317 2113-2121 SP_7 denotes COVID-19
T56598 2227-2232 NCBITaxon:4751 denotes fungi
T39068 2295-2303 SP_7 denotes COVID-19
T91984 2361-2367 NCBITaxon:4751 denotes fungal
T17638 2401-2412 NCBITaxon:5478 denotes Aspergillus
T7070 2413-2419 NCBITaxon:5059 denotes flavus
T19630 2433-2449 NCBITaxon:5478 denotes Candida glabrata
T48978 2469-2471 NCBITaxon:7719 denotes C.
T7397 2472-2480 NCBITaxon:8296 denotes albicans
T45290 2536-2542 NCBITaxon:4751 denotes fungal
T26007 2609-2620 NCBITaxon:31032 denotes . fumigatus
T92391 2625-2627 NCBITaxon:7719 denotes C.
T56812 2628-2636 NCBITaxon:8296 denotes albicans
T69365 2728-2736 SP_7 denotes COVID-19
T51502 2781-2790 NCBITaxon:2 denotes bacterial
T90238 2794-2800 NCBITaxon:4751 denotes fungal
T79560 2900-2910 CHEBI:67079;CHEBI:67079 denotes antifungal
T75018 3041-3047 NCBITaxon:4751 denotes fungal
T97810 3184-3192 SP_7 denotes COVID-19
T20972 3213-3222 UBERON:0002048 denotes pulmonary
T48370 3525-3533 SP_7 denotes COVID-19
T46953 3564-3567 NCBITaxon:9606 denotes man
T47229 3602-3610 UBERON:0003126 denotes tracheal
T77460 3669-3677 SP_7 denotes COVID-19
T56850 3712-3716 SP_10 denotes SARS
T86863 3755-3763 SP_10 denotes SARS-CoV
T60286 3768-3778 SP_7 denotes SARS-CoV-2
T57732 3798-3805 NCBITaxon:species denotes species
T69834 3901-3905 SP_10 denotes SARS
T84369 3941-3947 NCBITaxon:4751 denotes fungal
T84656 3961-3965 SP_10 denotes SARS
T42725 4069-4075 NCBITaxon:4751 denotes fungal
T88855 4108-4113 GO:0016265 denotes death
T81728 4118-4122 SP_10 denotes SARS
T66940 4174-4179 GO:0016265 denotes death
T72808 4297-4303 NCBITaxon:4751 denotes fungal
T30378 4569-4575 NCBITaxon:4751 denotes fungal
T91266 4592-4600 SP_7 denotes COVID-19
T74260 4694-4702 SP_7 denotes COVID-19
T87614 4728-4734 UBERON:0007311 denotes sputum
T92792 4735-4741 NCBITaxon:4751 denotes fungal
T10340 4807-4813 NCBITaxon:4751 denotes fungus
T29468 4828-4834 UBERON:0007311 denotes sputum
T4556 4835-4841 NCBITaxon:4751 denotes fungal
T20591 4921-4932 UBERON:0001004 denotes respiratory
T40802 4945-4953 SP_7 denotes COVID-19
T50213 5004-5013 NCBITaxon:2 denotes bacterium
T94044 5080-5091 CHEBI:33282;CHEBI:33282 denotes antibiotics
T11732 5116-5122 NCBITaxon:4751 denotes fungal
T29511 5192-5196 SP_10 denotes SARS
T75773 5343-5351 SP_7 denotes COVID-19
T11524 5367-5373 NCBITaxon:4751 denotes fungal
T59922 5426-5434 SP_7 denotes COVID-19
T57253 5487-5495 SP_7 denotes COVID-19
T6252 5541-5547 NCBITaxon:4751 denotes fungal
T23292 5646-5652 NCBITaxon:4751 denotes fungal
T24130 5666-5674 SP_7 denotes COVID-19
T77495 5775-5783 SP_7 denotes COVID-19
T35520 5841-5847 NCBITaxon:4751 denotes fungal
T39402 5958-5972 UBERON:0000922 denotes extrapulmonary
T42455 5973-5979 NCBITaxon:4751 denotes fungal
T86981 6021-6026 UBERON:0001443 denotes chest
T59688 6096-6102 NCBITaxon:4751 denotes fungal
T73764 6113-6125 GO:0065007 denotes surveillance
T74324 6234-6241 CHEBI:59132;CHEBI:59132 denotes antigen
T30906 6246-6254 GO:0042571 denotes antibody
T87476 6266-6272 CHEBI:37671;CHEBI:37671 denotes glucan
T49156 6320-6325 UBERON:0001977 denotes serum
T64926 6384-6399 UBERON:0002186;BV_4 denotes bronchoalveolar
T36463 6400-6406 BV_4;UBERON:0004821 denotes lavage
T72964 6407-6412 BV_4;UBERON:0006314 denotes fluid
T64314 6414-6418 UBERON:0001348;BV_4 denotes BALF
T62571 6424-6432 UBERON:0003126 denotes tracheal
T91278 6896-6912 CHEBI:86327;CHEBI:86327 denotes antifungal drugs
T63409 6991-6997 NCBITaxon:4751 denotes fungal
T27949 7012-7018 NCBITaxon:4751 denotes fungal
T13669 7043-7051 SP_7 denotes COVID-19
T90008 7065-7076 NCBITaxon:5052 denotes Aspergillus
T66500 7081-7088 NCBITaxon:5478 denotes Candida
T99249 7132-7138 NCBITaxon:4751 denotes fungus
T35314 7146-7150 UBERON:0002048 denotes lung
T1659 7251-7262 NCBITaxon:5052 denotes Aspergillus
T58904 7263-7270 NCBITaxon:species denotes species
T47255 7302-7306 UBERON:0000104 denotes life
T51772 7332-7340 SP_7 denotes COVID-19
T67109 7498-7507 UBERON:0002048 denotes pulmonary
T39323 7535-7548 GO:0030097;CL:0000037 denotes hematopoietic
T49768 7549-7558 CL:0000037 denotes stem cell
T85989 7594-7599 UBERON:0000062 denotes organ
T29170 7653-7664 GO:0030097 denotes hemopoietic
T75320 7862-7866 UBERON:0002048 denotes lung
T86222 7916-7927 GO:0050817 denotes coagulation
T89145 7948-7959 UBERON:0001004 denotes respiratory
T69728 8050-8054 UBERON:0002048 denotes lung
T44415 8055-8060 UBERON:0006314 denotes fluid
T93439 8064-8070 UBERON:0000479 denotes tissue
T55053 8078-8084 NCBITaxon:4751 denotes fungal
T56389 8182-8193 NCBITaxon:5052 denotes Aspergillus
T23187 8221-8232 CHEBI:17790;CHEBI:17790 denotes methenamine
T71536 8256-8269 CHEBI:29149;CHEBI:29149 denotes periodic acid
T44220 8299-8305 UBERON:0000479 denotes tissue
T96980 8357-8368 NCBITaxon:5052 denotes Aspergillus
T35360 8397-8402 NCBITaxon:4751 denotes fungi
T33859 8411-8419 NCBITaxon:5506 denotes Fusarium
T11824 8420-8424 NCBITaxon:species denotes spp.
T13465 8429-8441 NCBITaxon:286 denotes Scedosporium
T11097 8442-8445 NCBITaxon:species denotes spp
T71196 8723-8734 NCBITaxon:5052 denotes Aspergillus
T95830 8766-8772 NCBITaxon:4751 denotes fungal
T31042 8850-8861 NCBITaxon:5052 denotes Aspergillus
T44167 9123-9132 GO:0005840 denotes ribosomal
T80438 9188-9199 NCBITaxon:5052 denotes Aspergillus
T62724 9203-9210 UBERON:0000479 denotes tissues
T23730 9214-9218 BV_4 denotes BALF
T49081 9270-9281 NCBITaxon:5052 denotes Aspergillus
T81108 9282-9285 NCBITaxon:species denotes spp
T34970 9291-9297 PR:000006147 denotes CYP51A
T26672 9322-9323 NCBITaxon:8296 denotes A
T47994 9323-9334 NCBITaxon:31032 denotes . fumigatus
T85259 9443-9451 CHEBI:33893;CHEBI:33893 denotes reagents
T55352 9481-9486 UBERON:0001977 denotes serum
T62010 9491-9495 BV_4 denotes BALF
T90815 9727-9732 UBERON:0000178 denotes blood
T48524 9777-9788 UBERON:0001004 denotes respiratory
T65597 10098-10103 CHEBI:23888;CHEBI:23888 denotes drugs
T46137 10164-10173 CHEBI:35727;CHEBI:35727 denotes triazoles
T52391 10175-10187 CHEBI:6076;CHEBI:6076 denotes itraconazole
T91401 10189-10201 CHEBI:10023;CHEBI:10023 denotes voriconazole
T3792 16526-16534 SP_7 denotes COVID-19
T85248 10203-10215 CHEBI:64355;CHEBI:64355 denotes posaconazole
T90411 10231-10245 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T73200 10337-10345 CHEBI:35727;CHEBI:35727 denotes triazole
T5910 10346-10351 CHEBI:23888;CHEBI:23888 denotes drugs
T48332 10386-10390 CHEBI:23888;CHEBI:23888 denotes drug
T86042 10451-10457 CHEBI:68452;CHEBI:68452 denotes azoles
T32435 10468-10473 CHEBI:23888;CHEBI:23888 denotes drugs
T75578 10544-10552 SP_7 denotes COVID-19
T34882 10622-10641 CHEBI:36047;CHEBI:36047 denotes antibacterial drugs
T49366 10756-10762 UBERON:0002405 denotes immune
T64003 10810-10817 NCBITaxon:5478 denotes Candida
T61911 10818-10825 NCBITaxon:species denotes species
T23957 10923-10928 UBERON:0000178 denotes blood
T48865 11078-11084 CHEBI:37684;CHEBI:37684 denotes mannan
T92373 11100-11103 GO:0071735 denotes IgG
T47162 11111-11113 NCBITaxon:7719 denotes C.
T57710 11114-11122 NCBITaxon:8296 denotes albicans
T35396 11133-11141 GO:0042571 denotes antibody
T53099 11289-11294 UBERON:0000178 denotes blood
T24955 11325-11330 UBERON:0000178 denotes blood
T59727 11579-11586 NCBITaxon:5475 denotes Candida
T54891 11731-11738 NCBITaxon:5478 denotes Candida
T61456 11769-11774 UBERON:0000178 denotes blood
T65209 11939-11948 GO:0005618 denotes cell wall
T85105 11964-11971 NCBITaxon:5478 denotes Candida
T42218 11992-11997 NCBITaxon:4751 denotes fungi
T87069 12009-12021 NCBITaxon:106841 denotes Cryptococcus
T36492 12022-12029 NCBITaxon:species denotes species
T15328 12031-12042 NCBITaxon:229219 denotes Blastomyces
T4760 12043-12050 NCBITaxon:species denotes species
T58331 12056-12065 NCBITaxon:10090 denotes Mucorales
T42684 12134-12139 UBERON:0001977 denotes serum
T72467 12172-12179 NCBITaxon:5478 denotes Candida
T82705 12190-12195 NCBITaxon:4751 denotes fungi
T23301 12211-12217 CHEBI:37684;CHEBI:37684 denotes mannan
T42723 12233-12236 GO:0071735 denotes IgG
T74986 12350-12356 CHEBI:37684;CHEBI:37684 denotes mannan
T77993 12606-12613 NCBITaxon:5475 denotes Candida
T59886 12750-12757 NCBITaxon:5478 denotes Candida
T14852 13092-13097 UBERON:0000178 denotes blood
T20925 13514-13519 UBERON:0000178 denotes blood
T91350 13519-13526 UBERON:0006314 denotes -stream
T38107 13557-13564 NCBITaxon:5478 denotes Candida
T79192 13565-13573 SO:0001060 denotes isolates
T9230 13590-13601 NCBITaxon:5478 denotes C. glabrata
T87025 13605-13607 NCBITaxon:5478 denotes C.
T30437 13608-13620 NCBITaxon:7656 denotes parapsilosis
T22370 13953-13965 CHEBI:57248;CHEBI:57248 denotes echinocandin
T46371 14020-14031 CHEBI:46081;CHEBI:46081 denotes fluconazole
T37658 14033-14045 CHEBI:10023;CHEBI:10023 denotes voriconazole
T81153 14047-14059 CHEBI:6076;CHEBI:6076 denotes itraconazole
T23396 14066-14080 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T97471 14121-14127 CHEBI:68452;CHEBI:68452 denotes azoles
T23001 14207-14215 SP_7 denotes COVID-19
T32720 14489-14495 UBERON:0007311 denotes sputum
T9861 14497-14501 BV_4 denotes BALF
T91600 14642-14651 CHEBI:26130;CHEBI:26130 denotes pigmented
T10106 14667-14673 UBERON:0000479 denotes tissue
T83464 14702-14708 UBERON:0000479 denotes tissue
T35434 14731-14742 CHEBI:51686;CHEBI:51686 denotes hematoxylin
T10007 14840-14845 NCBITaxon:genus denotes genus
T7127 14850-14857 NCBITaxon:species denotes species
T90812 15061-15066 NCBITaxon:4751 denotes fungi
T23818 15103-15108 SO:0000704 denotes genes
T97689 15335-15340 NCBITaxon:4751 denotes fungi
T32801 15349-15354 UBERON:0001977 denotes serum
T94920 15375-15386 UBERON:0006314 denotes body fluids
T13019 15414-15420 UBERON:0000479 denotes tissue
T66115 16127-16139 CHEBI:64355;CHEBI:64355 denotes posaconazole
T48234 16160-16174 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T56630 16175-16180 CHEBI:18059;CHEBI:18059 denotes lipid
T55556 16181-16188 GO:0032991 denotes complex
T49844 16200-16214 CHEBI:2682;CHEBI:2682 denotes Amphotericin B
T95091 16219-16231 CHEBI:64355;CHEBI:64355 denotes posaconazole
T32997 16232-16236 UBERON:0000165 denotes oral
T69024 16308-16321 CHEBI:85979;CHEBI:85979 denotes isavuconazole
T31837 16449-16457 CHEBI:48121;CHEBI:48121 denotes polyenes
T93633 16462-16468 CHEBI:68452;CHEBI:68452 denotes azoles
T19394 16472-16480 CHEBI:48121;CHEBI:48121 denotes polyenes
T98903 16486-16499 CHEBI:57248;CHEBI:57248 denotes echinocandins
T4250 16549-16554 SP_6;NCBITaxon:9606 denotes human
T80532 16572-16577 NCBITaxon:10239 denotes virus
T69080 16609-16612 PR:000001004 denotes CD4
T57693 16615-16627 CL:0000084 denotes T-lymphocyte
T48016 16675-16681 UBERON:0002405 denotes immune
T2122 16871-16883 NCBITaxon:106841 denotes Cryptococcus
T52255 16884-16891 NCBITaxon:species denotes species
T50703 16902-16904 NCBITaxon:7719 denotes C.
T20343 16905-16915 NCBITaxon:5478 denotes neoformans
T17477 16920-16922 NCBITaxon:7719 denotes C.
T10330 16923-16929 NCBITaxon:5478 denotes gattii
T93842 16930-16937 NCBITaxon:species denotes species
T82098 17213-17232 UBERON:0001359 denotes cerebrospinal fluid
T15522 17234-17237 UBERON:0001359 denotes CSF
T58192 17334-17346 NCBITaxon:106841 denotes Cryptococcus
T54110 17364-17371 GO:0007114 denotes budding
T1942 17473-17477 CHEBI:2509;CHEBI:2509 denotes agar
T86453 17634-17638 GO:0040007 denotes grow
T63138 17697-17712 CHEBI:18154;CHEBI:18154 denotes polysaccharides
T61182 17765-17776 UBERON:0006314 denotes body fluids
T62464 17785-17790 UBERON:0001977 denotes serum
T61960 17818-17824 UBERON:0000479 denotes tissue
T30703 17856-17863 CHEBI:59132;CHEBI:59132 denotes antigen
T90969 17865-17869 PR:000003817 denotes CrAg
T24495 18110-18121 UBERON:0001004 denotes respiratory
T44771 18145-18158 UBERON:0001087 denotes pleural fluid
T43630 18163-18169 UBERON:0007311 denotes sputum
T49362 18366-18372 NCBITaxon:4751 denotes fungal
T52785 18553-18572 UBERON:0001359 denotes cerebrospinal fluid
T36771 18602-18609 CHEBI:59132;CHEBI:59132 denotes antigen
T28958 18687-18709 UBERON:0001017 denotes central nervous system
T89127 18890-18896 UBERON:0007023 denotes adults
T93441 19124-19138 CHEBI:2682;CHEBI:2682 denotes amphotericin B
T94698 19158-19169 CHEBI:5100;CHEBI:5100 denotes flucytosine
T49658 19183-19194 CHEBI:46081;CHEBI:46081 denotes fluconazole
T9605 19220-19231 CHEBI:46081;CHEBI:46081 denotes fluconazole
T18149 19234-19245 CHEBI:5100;CHEBI:5100 denotes flucytosine
T36092 19249-19263 CHEBI:2682;CHEBI:2682 denotes amphotericin B
T79474 19264-19276 CHEBI:23614;CHEBI:23614 denotes deoxycholate
T28968 19279-19290 CHEBI:46081;CHEBI:46081 denotes fluconazole
T44295 19321-19332 CHEBI:46081;CHEBI:46081 denotes fluconazole
T89336 19389-19400 CHEBI:46081;CHEBI:46081 denotes fluconazole
T75255 19450-19454 SP_10 denotes SARS
T39825 19520-19526 NCBITaxon:4751 denotes fungal
T46069 19564-19572 SP_7 denotes COVID-19
T64479 19620-19624 UBERON:0000104 denotes life
T56554 19657-19665 SP_7 denotes COVID-19
T92048 19682-19696 GO:0010467 denotes overexpression
T75201 19751-19757 UBERON:0002405;GO:0006955 denotes immune
T49672 19758-19766 GO:0006955 denotes response
T2312 19782-19785 PR:000001004 denotes CD4
T69012 19788-19789 CL:0000084 denotes T
T54698 19800-19806 CL:0000084 denotes T cell
T46770 19848-19854 NCBITaxon:4751 denotes fungal
T58249 19879-19887 SP_7 denotes COVID-19
T78951 20068-20074 NCBITaxon:4751 denotes fungal
T3426 20208-20214 CHEBI:37671;CHEBI:37671 denotes glucan
T20556 20216-20229 CHEBI:27680;CHEBI:27680 denotes galactomannan
T99766 20541-20549 SP_7 denotes COVID-19
T91168 20759-20767 SP_7 denotes COVID-19
T38663 20833-20839 NCBITaxon:4751 denotes fungal

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 669-677 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T2 808-813 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T3 3893-3897 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T4 4728-4734 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T5 4828-4834 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T6 6021-6026 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T7 6246-6254 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T8 6320-6325 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T9 7146-7150 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T10 7535-7558 Body_part denotes hematopoietic stem cell http://purl.org/sig/ont/fma/fma86475
T11 7554-7558 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T12 7588-7599 Body_part denotes solid organ http://purl.org/sig/ont/fma/fma55670
T13 7862-7866 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 8050-8054 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T15 8064-8070 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T16 8299-8305 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T17 8908-8911 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T18 9123-9132 Body_part denotes ribosomal http://purl.org/sig/ont/fma/fma66867
T19 9133-9136 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T20 9203-9210 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T21 9481-9486 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T22 9727-9732 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T23 10923-10928 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T24 11100-11103 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T25 11133-11141 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T26 11289-11294 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T27 11315-11319 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T28 11325-11330 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T29 11507-11511 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T30 11769-11774 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T31 11939-11943 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T32 12134-12139 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T33 12233-12236 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T34 12758-12761 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T35 13092-13097 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T36 13514-13519 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T37 14489-14495 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T38 14507-14511 Body_part denotes skin http://purl.org/sig/ont/fma/fma7163
T39 14667-14673 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T40 14702-14708 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T41 15070-15073 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T42 15341-15344 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T43 15349-15354 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T44 15375-15386 Body_part denotes body fluids http://purl.org/sig/ont/fma/fma280556
T45 15375-15379 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T46 15414-15420 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T47 16175-16180 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T48 16579-16582 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T49 16609-16627 Body_part denotes CD4 + T-lymphocyte http://purl.org/sig/ont/fma/fma70572
T50 16615-16627 Body_part denotes T-lymphocyte http://purl.org/sig/ont/fma/fma62870
T51 16640-16645 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T52 17213-17232 Body_part denotes cerebrospinal fluid http://purl.org/sig/ont/fma/fma20935
T53 17234-17237 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T54 17697-17712 Body_part denotes polysaccharides http://purl.org/sig/ont/fma/fma82746
T55 17765-17776 Body_part denotes body fluids http://purl.org/sig/ont/fma/fma280556
T56 17765-17769 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T57 17785-17790 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T58 17792-17795 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T59 17818-17824 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T60 18145-18158 Body_part denotes pleural fluid http://purl.org/sig/ont/fma/fma12273
T61 18163-18169 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T62 18378-18381 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T63 18553-18572 Body_part denotes cerebrospinal fluid http://purl.org/sig/ont/fma/fma20935
T64 18574-18577 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T65 18687-18709 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T66 18877-18880 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T67 18988-18991 Body_part denotes hiv http://purl.org/sig/ont/fma/fma278683
T68 19713-19722 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T69 19737-19741 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T70 19802-19806 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 4728-4734 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T2 4828-4834 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T3 6021-6026 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 6320-6325 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T5 7146-7150 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 7594-7599 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T7 7862-7866 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 8050-8054 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 8064-8070 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T10 8299-8305 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T11 8824-8846 Body_part denotes morphological features http://purl.obolibrary.org/obo/UBERON_0034768
T12 9481-9486 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 9727-9732 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T14 10923-10928 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T15 11128-11132 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T16 11289-11294 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T17 11315-11319 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T18 11325-11330 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T19 11507-11511 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T20 11769-11774 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T21 12134-12139 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T22 13092-13097 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T23 13514-13519 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T24 14489-14495 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T25 14507-14511 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014
T26 14667-14673 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T27 14702-14708 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T28 15349-15354 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T29 15414-15420 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T30 17213-17232 Body_part denotes cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0001359
T31 17785-17790 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T32 17818-17824 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T33 18145-18158 Body_part denotes pleural fluid http://purl.obolibrary.org/obo/UBERON_0001087
T34 18163-18169 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T35 18553-18572 Body_part denotes cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0001359
T36 18687-18709 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T37 18695-18709 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
54 25-33 Disease denotes COVID-19 MESH:C000657245
55 57-77 Disease denotes Fungal Co-infections MESH:D060085
81 788-791 Gene denotes CD4 Gene:920
82 800-803 Gene denotes CD8 Gene:925
83 85-90 Species denotes human Tax:9606
84 94-99 Species denotes human Tax:9606
85 168-215 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
86 217-227 Species denotes SARS-CoV-2 Tax:2697049
87 457-465 Species denotes SARS-CoV Tax:694009
88 470-525 Species denotes Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Tax:1335626
89 527-537 Species denotes SARS-CoV-2 Tax:2697049
90 730-738 Species denotes patients Tax:9606
91 834-842 Species denotes patients Tax:9606
92 859-867 Species denotes patients Tax:9606
93 1126-1134 Species denotes patients Tax:9606
94 121-145 Disease denotes coronavirus disease 2019 MESH:C000657245
95 147-155 Disease denotes COVID-19 MESH:C000657245
96 313-321 Disease denotes COVID-19 MESH:C000657245
97 435-441 Disease denotes deaths MESH:D003643
98 563-584 Disease denotes respiratory infection MESH:D012141
99 599-635 Disease denotes Acute Respiratory Distress Syndromes MESH:D012128
100 637-641 Disease denotes ARDS MESH:D012128
101 721-729 Disease denotes COVID-19 MESH:C000657245
102 819-833 Disease denotes Critically ill MESH:D016638
103 1060-1073 Disease denotes co-infections MESH:D060085
104 1117-1125 Disease denotes COVID-19 MESH:C000657245
105 1162-1172 Disease denotes infections MESH:D007239
108 1277-1297 Disease denotes Fungal Co-infections MESH:D060085
109 1301-1309 Disease denotes COVID-19 MESH:C000657245
157 1380-1388 Species denotes patients Tax:9606
158 1581-1591 Species denotes SARS-CoV-2 Tax:2697049
159 1597-1606 Species denotes 2019-nCoV Tax:2697049
160 1612-1634 Species denotes 2019 novel coronavirus Tax:2697049
161 2122-2130 Species denotes patients Tax:9606
162 2304-2312 Species denotes patients Tax:9606
163 2401-2419 Species denotes Aspergillus flavus Tax:5059
164 2433-2449 Species denotes Candida glabrata Tax:5478
165 2469-2480 Species denotes C. albicans Tax:5476
166 2523-2531 Species denotes patients Tax:9606
167 2577-2585 Species denotes patients Tax:9606
168 2597-2606 Species denotes A. flavus Tax:5059
169 2608-2620 Species denotes A. fumigatus Tax:746128
170 2625-2636 Species denotes C. albicans Tax:5476
171 2737-2745 Species denotes patients Tax:9606
172 2873-2881 Species denotes patients Tax:9606
173 2956-2964 Species denotes patients Tax:9606
174 2990-2998 Species denotes patients Tax:9606
175 3104-3111 Species denotes patient Tax:9606
176 3302-3310 Species denotes patients Tax:9606
177 3377-3385 Species denotes patients Tax:9606
178 3417-3425 Species denotes patients Tax:9606
179 3457-3469 Species denotes A. fumigatus Tax:746128
180 3534-3542 Species denotes patients Tax:9606
181 3589-3598 Species denotes A. flavus Tax:5059
182 1347-1367 Disease denotes fungal co-infections MESH:D060085
183 1371-1379 Disease denotes COVID-19 MESH:C000657245
184 1496-1505 Disease denotes infection MESH:D007239
185 1551-1560 Disease denotes infection MESH:D007239
186 1567-1575 Disease denotes COVID-19 MESH:C000657245
187 2004-2017 Disease denotes co-infections MESH:D060085
188 2113-2121 Disease denotes COVID-19 MESH:C000657245
189 2210-2223 Disease denotes co-infections MESH:D060085
190 2295-2303 Disease denotes COVID-19 MESH:C000657245
191 2368-2377 Disease denotes infection MESH:D007239
192 2536-2555 Disease denotes fungal co-infection MESH:D060085
193 2562-2576 Disease denotes critically ill MESH:D016638
194 2696-2716 Disease denotes secondary infections MESH:D060085
195 2728-2736 Disease denotes COVID-19 MESH:C000657245
196 2794-2810 Disease denotes fungal infection MESH:D009181
197 3041-3060 Disease denotes fungal co-infection MESH:D060085
198 3184-3192 Disease denotes COVID-19 MESH:C000657245
199 3204-3236 Disease denotes invasive pulmonary aspergillosis MESH:D055744
200 3287-3301 Disease denotes critically ill MESH:D016638
201 3335-3339 Disease denotes ARDS MESH:D012128
202 3525-3533 Disease denotes COVID-19 MESH:C000657245
203 3575-3583 Disease denotes infected MESH:D007239
208 3678-3686 Species denotes Patients Tax:9606
209 3646-3665 Disease denotes Fungal Co-infection MESH:D060085
210 3669-3677 Disease denotes COVID-19 MESH:C000657245
211 3712-3716 Disease denotes SARS MESH:D045169
242 3755-3763 Species denotes SARS-CoV Tax:694009
243 3768-3778 Species denotes SARS-CoV-2 Tax:2697049
244 3966-3974 Species denotes patients Tax:9606
245 4123-4131 Species denotes patients Tax:9606
246 4391-4399 Species denotes patients Tax:9606
247 4463-4471 Species denotes patients Tax:9606
248 4601-4609 Species denotes patients Tax:9606
249 4703-4711 Species denotes patients Tax:9606
250 3901-3905 Disease denotes SARS MESH:D045169
251 3941-3957 Disease denotes fungal infection MESH:D009181
252 3961-3965 Disease denotes SARS MESH:D045169
253 4076-4085 Disease denotes infection MESH:D007239
254 4108-4113 Disease denotes death MESH:D003643
255 4118-4122 Disease denotes SARS MESH:D045169
256 4174-4179 Disease denotes death MESH:D003643
257 4254-4263 Disease denotes pneumonia MESH:D011014
258 4277-4281 Disease denotes ARDS MESH:D012128
259 4297-4313 Disease denotes fungal infection MESH:D009181
260 4508-4517 Disease denotes mortality MESH:D003643
261 4569-4588 Disease denotes fungal co-infection MESH:D060085
262 4592-4600 Disease denotes COVID-19 MESH:C000657245
263 4694-4702 Disease denotes COVID-19 MESH:C000657245
264 4921-4941 Disease denotes respiratory symptoms MESH:D012818
265 4945-4953 Disease denotes COVID-19 MESH:C000657245
266 4986-4998 Disease denotes co-infection MESH:D060085
267 5116-5132 Disease denotes fungal infection MESH:D009181
268 5192-5196 Disease denotes SARS MESH:D045169
269 5222-5244 Disease denotes invasive aspergillosis MESH:D055744
270 5343-5351 Disease denotes COVID-19 MESH:C000657245
271 5367-5384 Disease denotes fungal infections MESH:D009181
274 5426-5434 Disease denotes COVID-19 MESH:C000657245
275 5451-5471 Disease denotes Fungal Co-infections MESH:D060085
294 5675-5683 Species denotes patients Tax:9606
295 5831-5839 Species denotes patients Tax:9606
296 6076-6084 Species denotes patients Tax:9606
297 6368-6376 Species denotes patients Tax:9606
298 7052-7060 Species denotes patients Tax:9606
299 7065-7076 Species denotes Aspergillus Tax:746128
300 7081-7088 Species denotes Candida Tax:5478
301 7208-7220 Species denotes Cryptococcus Tax:5207
302 5487-5495 Disease denotes COVID-19 MESH:C000657245
303 5548-5561 Disease denotes co-infections MESH:D060085
304 5666-5674 Disease denotes COVID-19 MESH:C000657245
305 5775-5783 Disease denotes COVID-19 MESH:C000657245
306 5848-5858 Disease denotes infections MESH:D007239
307 5980-5990 Disease denotes infections MESH:D007239
308 6602-6612 Disease denotes infections MESH:D007239
309 7019-7032 Disease denotes co-infections MESH:D060085
310 7043-7051 Disease denotes COVID-19 MESH:C000657245
311 7146-7161 Disease denotes lung infections MESH:D012141
313 7223-7245 Disease denotes Invasive Aspergillosis MESH:D055744
344 7341-7349 Species denotes patients Tax:9606
345 7430-7438 Species denotes patients Tax:9606
346 7845-7853 Species denotes patients Tax:9606
347 7902-7910 Species denotes patients Tax:9606
348 9322-9334 Species denotes A. fumigatus Tax:746128
349 9636-9644 Species denotes patients Tax:9606
350 7251-7262 Species denotes Aspergillus Tax:746128
351 8182-8193 Species denotes Aspergillus Tax:746128
352 8357-8368 Species denotes Aspergillus Tax:746128
353 8723-8734 Species denotes Aspergillus Tax:746128
354 8850-8861 Species denotes Aspergillus Tax:746128
355 9188-9199 Species denotes Aspergillus Tax:746128
356 9270-9281 Species denotes Aspergillus Tax:746128
357 8221-8232 Chemical denotes methenamine MESH:D008709
358 8233-8239 Chemical denotes silver MESH:D012834
359 8247-8250 Chemical denotes GMS
360 8256-8269 Chemical denotes periodic acid MESH:D010504
361 9496-9498 Chemical denotes GM MESH:C012990
362 7319-7328 Disease denotes infection MESH:D007239
363 7332-7340 Disease denotes COVID-19 MESH:C000657245
364 7465-7476 Disease denotes neutropenia MESH:D009503
365 7478-7515 Disease denotes chronic obstructive pulmonary disease MESH:D029424
366 7517-7521 Disease denotes COPD MESH:D029424
367 7633-7651 Disease denotes immunodeficiencies MESH:D007153
368 7653-7675 Disease denotes hemopoietic malignancy MESH:D009369
369 7682-7697 Disease denotes cystic fibrosis MESH:D003550
370 7916-7937 Disease denotes coagulation disorders MESH:D001778
371 7948-7967 Disease denotes respiratory failure MESH:D012131
372 8085-8094 Disease denotes infection MESH:D007239
373 9624-9635 Disease denotes neutropenic MESH:D009503
388 10317-10325 Species denotes patients Tax:9606
389 10164-10173 Chemical denotes triazoles MESH:D014230
390 10175-10187 Chemical denotes itraconazole MESH:D017964
391 10189-10201 Chemical denotes voriconazole MESH:D065819
392 10203-10215 Chemical denotes posaconazole MESH:C101425
393 10217-10228 Chemical denotes esaconazole
394 10231-10245 Chemical denotes Amphotericin B MESH:D000666
395 10268-10281 Chemical denotes echinococcins
396 10283-10293 Chemical denotes micafungin MESH:D000077551
397 10297-10309 Chemical denotes carpofenjing
398 10337-10345 Chemical denotes triazole MESH:D014230
399 10451-10457 Chemical denotes azoles MESH:D001393
400 9886-9905 Disease denotes Infectious Diseases MESH:D003141
401 10011-10032 Disease denotes aspergillus infection MESH:D001228
403 10503-10523 Disease denotes Invasive Candidiasis MESH:D058365
425 10553-10561 Species denotes patients Tax:9606
426 10698-10706 Species denotes patients Tax:9606
427 11111-11122 Species denotes C. albicans Tax:5476
428 13062-13068 Species denotes yeasts Tax:4932
429 13590-13601 Species denotes C. glabrata Tax:5478
430 13605-13620 Species denotes C. parapsilosis Tax:5480
431 10810-10817 Species denotes Candida Tax:5478
432 11579-11586 Species denotes Candida Tax:5478
433 11964-11971 Species denotes Candida Tax:5478
434 12009-12021 Species denotes Cryptococcus Tax:5207
435 12172-12179 Species denotes Candida Tax:5478
436 12606-12613 Species denotes Candida Tax:5478
437 12750-12757 Species denotes Candida Tax:5478
438 13557-13564 Species denotes Candida Tax:5478
439 11924-11927 Chemical denotes BDG
440 10544-10552 Disease denotes COVID-19 MESH:C000657245
441 10734-10745 Disease denotes neutropenia MESH:D009503
442 10795-10804 Disease denotes infection MESH:D007239
443 11685-11696 Disease denotes candidiasis MESH:D002177
444 11711-11748 Disease denotes candidiasis or deep Candida infection MESH:C536777
445 12805-12815 Disease denotes candidemia MESH:D058387
460 13882-13890 Species denotes patients Tax:9606
461 13953-13965 Chemical denotes echinocandin MESH:D054714
462 13967-13978 Chemical denotes caspofungin MESH:D000077336
463 13980-13990 Chemical denotes micafungin MESH:D000077551
464 13996-14009 Chemical denotes anidulafungin MESH:D000077612
465 14012-14018 Chemical denotes azoles MESH:D001393
466 14020-14031 Chemical denotes fluconazole MESH:D015725
467 14033-14045 Chemical denotes voriconazole MESH:D065819
468 14047-14059 Chemical denotes itraconazole MESH:D017964
469 14066-14080 Chemical denotes Amphotericin B MESH:D000666
470 14121-14127 Chemical denotes azoles MESH:D001393
471 13705-13724 Disease denotes Infectious Diseases MESH:D003141
472 13795-13816 Disease denotes candidiasis infection MESH:D002177
473 14174-14182 Disease denotes toxicity MESH:D064420
475 14185-14206 Disease denotes Invasive Mucormycosis MESH:D009091
488 14216-14224 Species denotes patients Tax:9606
489 14731-14748 Chemical denotes hematoxylin–eosin
490 14750-14752 Chemical denotes HE
491 14755-14758 Chemical denotes PAS
492 14763-14766 Chemical denotes GMS
493 15396-15404 Chemical denotes paraffin MESH:D010232
494 14207-14215 Disease denotes COVID-19 MESH:C000657245
495 14230-14236 Disease denotes trauma MESH:D014947
496 14238-14255 Disease denotes diabetes mellitus MESH:D003920
497 14279-14290 Disease denotes neutropenia MESH:D009503
498 14507-14519 Disease denotes skin lesions MESH:D012871
499 14638-14658 Disease denotes non-pigmented hyphae MESH:D010859
512 16034-16042 Species denotes patients Tax:9606
513 16127-16139 Chemical denotes posaconazole MESH:C101425
514 16160-16174 Chemical denotes Amphotericin B MESH:D000666
515 16175-16180 Chemical denotes lipid MESH:D008055
516 16200-16214 Chemical denotes Amphotericin B MESH:D000666
517 16219-16231 Chemical denotes posaconazole MESH:C101425
518 16308-16321 Chemical denotes isavuconazole MESH:C508735
519 16449-16468 Chemical denotes polyenes and azoles
520 16472-16480 Chemical denotes polyenes MESH:D011090
521 16486-16499 Chemical denotes echinocandins MESH:D054714
522 16022-16033 Disease denotes neutropenic MESH:D009503
523 16055-16080 Disease denotes graft-versus-host disease MESH:D006086
525 16502-16525 Disease denotes Invasive Cryptococcosis MESH:D003453
553 16609-16612 Gene denotes CD4 Gene:920
554 16646-16648 Gene denotes μL Gene:4591
555 16535-16543 Species denotes patients Tax:9606
556 16902-16915 Species denotes C. neoformans Tax:5207
557 16920-16929 Species denotes C. gattii Tax:552467
558 17385-17391 Species denotes yeasts Tax:4932
559 17566-17574 Species denotes patients Tax:9606
560 18199-18214 Species denotes Cryptococcus is Tax:1198465
561 18634-18642 Species denotes patients Tax:9606
562 16871-16883 Species denotes Cryptococcus Tax:5207
563 17334-17346 Species denotes Cryptococcus Tax:5207
564 17640-17652 Species denotes Cryptococcus Tax:5207
565 17716-17728 Species denotes Cryptococcus Tax:5207
566 18649-18661 Species denotes Cryptococcus Tax:5207
567 17257-17266 Chemical denotes India ink MESH:C028433
568 17454-17477 Chemical denotes Sabouraud dextrose agar
569 16526-16534 Disease denotes COVID-19 MESH:C000657245
570 16549-16593 Disease denotes human immunodeficiency virus (HIV) infection MESH:D015658
571 16710-16724 Disease denotes cryptococcosis MESH:D003453
572 16756-16775 Disease denotes meningoencephalitis MESH:D008590
573 16834-16848 Disease denotes cryptococcosis MESH:D003453
574 16956-16970 Disease denotes cryptococcosis MESH:D003453
575 17078-17087 Disease denotes infection MESH:D007239
576 17183-17197 Disease denotes cryptococcosis MESH:D003453
577 18314-18328 Disease denotes cryptococcosis MESH:D003453
578 18507-18521 Disease denotes cryptococcosis MESH:D003453
579 18718-18741 Disease denotes cryptococcal meningitis MESH:D016919
595 18915-18923 Species denotes children Tax:9606
596 18988-18991 Species denotes hiv Tax:12721
597 19124-19151 Chemical denotes amphotericin B deoxycholate MESH:C059765
598 19158-19169 Chemical denotes flucytosine MESH:D005437
599 19183-19194 Chemical denotes fluconazole MESH:D015725
600 19220-19231 Chemical denotes fluconazole MESH:D015725
601 19234-19245 Chemical denotes flucytosine MESH:D005437
602 19249-19263 Chemical denotes amphotericin B MESH:D000666
603 19264-19276 Chemical denotes deoxycholate MESH:D003840
604 19279-19290 Chemical denotes fluconazole MESH:D015725
605 19321-19332 Chemical denotes fluconazole MESH:D015725
606 19389-19400 Chemical denotes fluconazole MESH:D015725
607 18853-18873 Disease denotes cryptococcal disease MESH:D016919
608 18877-18889 Disease denotes HIV-infected MESH:D015658
609 19007-19027 Disease denotes cryptococcal-disease MESH:D016919
611 20824-20852 Disease denotes invasive fungal co-infection MESH:D060085
638 19782-19785 Gene denotes CD4 Gene:920
639 19794-19797 Gene denotes CD8 Gene:925
640 19666-19674 Species denotes patients Tax:9606
641 19888-19896 Species denotes patients Tax:9606
642 20550-20558 Species denotes patients Tax:9606
643 20768-20776 Species denotes patients Tax:9606
644 20198-20214 Chemical denotes (1,3)-β-d-glucan MESH:C480180
645 20216-20229 Chemical denotes galactomannan MESH:C012990
646 19450-19454 Disease denotes SARS MESH:D045169
647 19527-19540 Disease denotes co-infections MESH:D060085
648 19564-19572 Disease denotes COVID-19 MESH:C000657245
649 19637-19655 Disease denotes infectious disease MESH:D003141
650 19657-19665 Disease denotes COVID-19 MESH:C000657245
651 19855-19867 Disease denotes co-infection MESH:D060085
652 19879-19887 Disease denotes COVID-19 MESH:C000657245
653 19957-19968 Disease denotes neutropenia MESH:D009503
654 20011-20029 Disease denotes immunodeficiencies MESH:D007153
655 20035-20040 Disease denotes tumor MESH:D009369
656 20068-20087 Disease denotes fungal co-infection MESH:D060085
657 20310-20326 Disease denotes invasive mycosis MESH:D015821
658 20394-20410 Disease denotes invasive mycosis MESH:D015821
659 20541-20549 Disease denotes COVID-19 MESH:C000657245
660 20679-20692 Disease denotes aspergillosis MESH:D001228
661 20694-20705 Disease denotes candidiasis MESH:D002177
662 20724-20738 Disease denotes cryptococcosis MESH:D003453
663 20759-20767 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 25-33 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 67-77 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T25 121-145 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T26 147-155 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 168-215 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T28 168-201 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T29 217-225 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 313-321 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 457-465 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 527-535 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 563-584 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T34 575-584 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 599-635 Disease denotes Acute Respiratory Distress Syndromes http://purl.obolibrary.org/obo/MONDO_0006502
T36 605-635 Disease denotes Respiratory Distress Syndromes http://purl.obolibrary.org/obo/MONDO_0009971
T37 637-641 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T38 721-729 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 1063-1073 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T40 1117-1125 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 1155-1172 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T42 1287-1300 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T43 1301-1309 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 1357-1370 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T45 1371-1379 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 1489-1505 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T47 1496-1505 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T48 1551-1560 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T49 1567-1575 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 1581-1589 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 2007-2017 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T52 2113-2121 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 2213-2232 Disease denotes infections of fungi http://purl.obolibrary.org/obo/MONDO_0002041
T54 2295-2303 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 2361-2377 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T56 2368-2377 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T57 2433-2449 Disease denotes Candida glabrata http://purl.obolibrary.org/obo/MONDO_0022636
T58 2546-2555 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T59 2706-2716 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T60 2728-2736 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 2794-2810 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T62 2801-2810 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T63 3051-3060 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T64 3184-3192 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 3223-3236 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T66 3335-3339 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T67 3525-3533 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 3656-3665 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T69 3669-3677 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 3712-3716 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T71 3721-3730 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T72 3755-3763 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T73 3768-3776 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T74 3901-3905 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T75 3941-3957 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T76 3948-3957 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 3961-3965 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T78 4069-4085 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T79 4076-4085 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T80 4118-4122 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T81 4244-4253 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T82 4254-4263 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T83 4277-4281 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T84 4297-4313 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T85 4304-4313 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T86 4414-4423 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T87 4579-4588 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T88 4592-4600 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T89 4694-4702 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T90 4945-4953 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T91 4989-4998 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T92 5116-5132 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T93 5123-5132 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T94 5192-5196 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T95 5222-5244 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T96 5231-5244 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T97 5266-5275 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T98 5343-5351 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 5367-5384 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T100 5426-5434 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 5461-5471 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T102 5487-5495 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 5551-5561 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T104 5666-5674 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T105 5775-5783 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 5841-5858 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T107 5973-5990 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T108 6443-6445 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T109 6602-6612 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T110 7022-7035 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T111 7043-7051 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T112 7151-7161 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T113 7223-7245 Disease denotes Invasive Aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T114 7232-7245 Disease denotes Aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T115 7247-7249 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T116 7319-7328 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T117 7332-7340 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 7465-7476 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T119 7478-7515 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T120 7498-7515 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T121 7517-7521 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T122 7633-7651 Disease denotes immunodeficiencies http://purl.obolibrary.org/obo/MONDO_0021094
T123 7682-7697 Disease denotes cystic fibrosis http://purl.obolibrary.org/obo/MONDO_0009061
T124 7699-7701 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T125 7731-7733 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T126 7916-7940 Disease denotes coagulation disorders or http://purl.obolibrary.org/obo/MONDO_0001531
T127 7948-7967 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T128 8078-8094 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T129 8085-8094 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T130 8278-8281 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T131 9086-9088 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T132 9670-9676 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T133 9886-9896 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T134 10023-10032 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T135 10153-10155 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T136 10361-10363 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T137 10503-10523 Disease denotes Invasive Candidiasis http://purl.obolibrary.org/obo/MONDO_0042233|http://purl.obolibrary.org/obo/MONDO_0044067
T139 10512-10523 Disease denotes Candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T140 10525-10527 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T141 10544-10552 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T142 10734-10745 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T143 10795-10804 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T144 10872-10874 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T145 10962-10969 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047
T146 11032-11034 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T147 11685-11696 Disease denotes candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T148 11711-11722 Disease denotes candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T149 11731-11748 Disease denotes Candida infection http://purl.obolibrary.org/obo/MONDO_0002026
T150 11739-11748 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T151 12805-12815 Disease denotes candidemia http://purl.obolibrary.org/obo/MONDO_0044070
T152 13325-13327 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T153 13705-13715 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T154 13795-13806 Disease denotes candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T155 13807-13816 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T156 13927-13929 Disease denotes IC http://purl.obolibrary.org/obo/MONDO_0042233
T157 14194-14206 Disease denotes Mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T158 14207-14215 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T159 14230-14236 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T160 14238-14255 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T161 14279-14290 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T162 14334-14346 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T163 14353-14365 Disease denotes Mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T164 14755-14758 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T165 15618-15630 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T166 15696-15703 Disease denotes Mycoses http://purl.obolibrary.org/obo/MONDO_0002041
T167 15801-15813 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T168 15941-15953 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T169 16055-16080 Disease denotes graft-versus-host disease http://purl.obolibrary.org/obo/MONDO_0013730
T170 16511-16525 Disease denotes Cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T171 16526-16534 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T172 16555-16571 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T173 16578-16593 Disease denotes (HIV) infection http://purl.obolibrary.org/obo/MONDO_0005109
T174 16584-16593 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T175 16710-16724 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T176 16756-16775 Disease denotes meningoencephalitis http://purl.obolibrary.org/obo/MONDO_0005845
T177 16834-16848 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T178 16956-16970 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T179 17078-17087 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T180 17183-17197 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T181 18314-18328 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T182 18507-18521 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T183 18718-18741 Disease denotes cryptococcal meningitis http://purl.obolibrary.org/obo/MONDO_0005723
T184 18731-18741 Disease denotes meningitis http://purl.obolibrary.org/obo/MONDO_0004796|http://purl.obolibrary.org/obo/MONDO_0021108
T186 19450-19454 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T187 19459-19468 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T188 19530-19540 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T189 19564-19572 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T190 19637-19655 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T191 19657-19665 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T192 19858-19867 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T193 19879-19887 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T194 19957-19968 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T195 20002-20029 Disease denotes acquired immunodeficiencies http://purl.obolibrary.org/obo/MONDO_0017769
T196 20035-20040 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T197 20078-20087 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T198 20319-20326 Disease denotes mycosis http://purl.obolibrary.org/obo/MONDO_0002041
T199 20403-20410 Disease denotes mycosis http://purl.obolibrary.org/obo/MONDO_0002041
T200 20541-20549 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T201 20679-20692 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T202 20694-20705 Disease denotes candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T203 20707-20719 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T204 20724-20738 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T205 20759-20767 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T206 20843-20852 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T7 85-90 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T8 94-99 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T9 230-233 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 322-325 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 774-775 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 788-791 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T13 800-803 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T14 806-813 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T15 963-964 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 1660-1662 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T17 2513-2515 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T18 2559-2561 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T19 2597-2598 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 2608-2609 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T21 2673-2674 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 2937-2939 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T23 3062-3064 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T24 3163-3164 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T25 3457-3458 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T26 3589-3590 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T27 3984-3986 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T28 4181-4183 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T29 4819-4820 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 4851-4853 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T31 5697-5699 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T32 5697-5699 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T33 5822-5827 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T34 5911-5913 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T35 6021-6026 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 6346-6352 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T37 6482-6489 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T38 6845-6852 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T39 7146-7150 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T40 7146-7150 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T41 7549-7558 http://purl.obolibrary.org/obo/CL_0000034 denotes stem cell
T42 7594-7599 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T43 7618-7620 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T44 7698-7706 http://purl.obolibrary.org/obo/CLO_0002368 denotes (CF) [28
T45 7743-7744 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 7862-7866 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T47 7862-7866 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T48 8050-8054 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T49 8050-8054 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T50 8076-8077 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 8488-8489 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 9034-9035 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 9322-9323 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T54 9499-9506 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T55 9719-9723 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T56 9727-9732 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T57 9727-9732 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T58 10244-10245 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T59 10923-10928 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T60 10923-10928 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T61 11062-11067 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T62 11104-11109 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T63 11128-11132 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T64 11289-11294 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T65 11289-11294 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T66 11325-11330 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T67 11325-11330 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T68 11467-11471 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T69 11653-11662 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T70 11749-11752 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T71 11769-11774 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T72 11769-11774 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T73 11813-11818 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T74 11931-11932 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 11939-11943 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T76 12237-12242 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T77 12331-12332 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 12417-12422 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T79 12508-12509 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 12643-12648 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T81 12680-12682 http://purl.obolibrary.org/obo/CLO_0050160 denotes T2
T82 12968-12969 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 13092-13097 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T84 13092-13097 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T85 13153-13154 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 13434-13435 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 13486-13493 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test is
T88 13514-13519 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T89 13514-13519 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T90 13866-13868 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T91 14079-14080 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T92 14348-14350 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T93 14507-14511 http://purl.obolibrary.org/obo/UBERON_0000014 denotes skin
T94 14507-14511 http://purl.obolibrary.org/obo/UBERON_0001003 denotes skin
T95 14507-14511 http://purl.obolibrary.org/obo/UBERON_0002097 denotes skin
T96 14507-14511 http://purl.obolibrary.org/obo/UBERON_0002199 denotes skin
T97 14507-14511 http://www.ebi.ac.uk/efo/EFO_0000962 denotes skin
T98 14583-14584 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 14768-14770 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T100 15103-15108 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T101 15375-15386 http://purl.obolibrary.org/obo/UBERON_0006314 denotes body fluids
T102 15863-15865 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T103 16173-16174 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T104 16213-16214 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T105 16549-16554 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T106 16572-16577 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T107 16609-16612 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T108 16640-16645 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T109 16991-16992 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 17286-17287 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 17481-17492 http://purl.obolibrary.org/obo/CLO_0001282 denotes 30 °C for 7
T112 17765-17776 http://purl.obolibrary.org/obo/UBERON_0006314 denotes body fluids
T113 17881-17886 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T114 17936-17940 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T115 17942-17945 http://purl.obolibrary.org/obo/CLO_0007247 denotes LAT
T116 18299-18300 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 18362-18365 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes pan
T118 18495-18496 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 18531-18532 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 18687-18709 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T121 18687-18709 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T122 18687-18709 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T123 18927-18931 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T124 18948-18960 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T125 19028-19030 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T126 19137-19138 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T127 19262-19263 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T128 19618-19619 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 19737-19741 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T130 19782-19785 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T131 19794-19797 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T132 19800-19806 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T133 20577-20578 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T4 64-66 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T5 1284-1286 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T6 2900-2910 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T7 2911-2919 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T8 3125-3135 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T9 3136-3144 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T10 3238-3241 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T12 3403-3406 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T14 3653-3655 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T15 4354-4357 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T17 4499-4502 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T19 5080-5091 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T20 5458-5460 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T21 5697-5699 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T22 6219-6222 Chemical denotes iii http://purl.obolibrary.org/obo/CHEBI_74062
T23 6234-6241 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T24 6266-6272 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T25 6288-6301 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T26 6303-6305 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T28 6443-6445 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T29 6472-6481 Chemical denotes biomarker http://purl.obolibrary.org/obo/CHEBI_59163
T30 6819-6829 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T31 6854-6857 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T32 6896-6912 Chemical denotes antifungal drugs http://purl.obolibrary.org/obo/CHEBI_35718|http://purl.obolibrary.org/obo/CHEBI_86327
T34 6907-6912 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T35 6921-6924 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T36 7247-7249 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T37 7447-7449 Chemical denotes GC http://purl.obolibrary.org/obo/CHEBI_73890
T38 7677-7679 Chemical denotes HM http://purl.obolibrary.org/obo/CHEBI_74053
T39 7731-7733 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T40 8221-8232 Chemical denotes methenamine http://purl.obolibrary.org/obo/CHEBI_6824
T41 8233-8239 Chemical denotes silver http://purl.obolibrary.org/obo/CHEBI_30512|http://purl.obolibrary.org/obo/CHEBI_9141
T43 8256-8269 Chemical denotes periodic acid http://purl.obolibrary.org/obo/CHEBI_29149
T44 8265-8269 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T45 8278-8281 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T46 8908-8911 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T47 9086-9088 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T48 9091-9094 Chemical denotes iii http://purl.obolibrary.org/obo/CHEBI_74062
T49 9133-9136 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T50 9443-9451 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T51 9496-9498 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T53 10098-10103 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T54 10153-10155 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T55 10164-10173 Chemical denotes triazoles http://purl.obolibrary.org/obo/CHEBI_35727
T56 10175-10187 Chemical denotes itraconazole http://purl.obolibrary.org/obo/CHEBI_6076
T57 10189-10201 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T58 10203-10215 Chemical denotes posaconazole http://purl.obolibrary.org/obo/CHEBI_64355
T59 10283-10293 Chemical denotes micafungin http://purl.obolibrary.org/obo/CHEBI_600520
T60 10337-10345 Chemical denotes triazole http://purl.obolibrary.org/obo/CHEBI_38597
T61 10346-10351 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T62 10361-10363 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T63 10386-10390 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T64 10451-10457 Chemical denotes azoles http://purl.obolibrary.org/obo/CHEBI_68452
T65 10468-10473 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T66 10622-10641 Chemical denotes antibacterial drugs http://purl.obolibrary.org/obo/CHEBI_36047
T67 10636-10641 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T68 11013-11017 Chemical denotes gold http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050
T70 11078-11084 Chemical denotes mannan http://purl.obolibrary.org/obo/CHEBI_28808
T71 12211-12217 Chemical denotes mannan http://purl.obolibrary.org/obo/CHEBI_28808
T72 12350-12356 Chemical denotes mannan http://purl.obolibrary.org/obo/CHEBI_28808
T73 12680-12682 Chemical denotes T2 http://purl.obolibrary.org/obo/CHEBI_29298|http://purl.obolibrary.org/obo/CHEBI_75710
T75 12758-12761 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T76 13953-13965 Chemical denotes echinocandin http://purl.obolibrary.org/obo/CHEBI_57248
T77 13967-13978 Chemical denotes caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T78 13980-13990 Chemical denotes micafungin http://purl.obolibrary.org/obo/CHEBI_600520
T79 13996-14009 Chemical denotes anidulafungin http://purl.obolibrary.org/obo/CHEBI_55346
T80 14012-14018 Chemical denotes azoles http://purl.obolibrary.org/obo/CHEBI_68452
T81 14020-14031 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T82 14033-14045 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T83 14047-14059 Chemical denotes itraconazole http://purl.obolibrary.org/obo/CHEBI_6076
T84 14121-14127 Chemical denotes azoles http://purl.obolibrary.org/obo/CHEBI_68452
T85 14257-14259 Chemical denotes GC http://purl.obolibrary.org/obo/CHEBI_73890
T86 14265-14267 Chemical denotes HM http://purl.obolibrary.org/obo/CHEBI_74053
T87 14731-14742 Chemical denotes hematoxylin http://purl.obolibrary.org/obo/CHEBI_51686
T88 14755-14758 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T89 14864-14867 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T90 15070-15073 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T91 15341-15344 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T92 15997-16007 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T93 16127-16139 Chemical denotes posaconazole http://purl.obolibrary.org/obo/CHEBI_64355
T94 16175-16180 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T95 16190-16214 Chemical denotes liposomal Amphotericin B http://purl.obolibrary.org/obo/CHEBI_2682
T96 16219-16231 Chemical denotes posaconazole http://purl.obolibrary.org/obo/CHEBI_64355
T97 16278-16288 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T98 16308-16321 Chemical denotes isavuconazole http://purl.obolibrary.org/obo/CHEBI_85979
T99 16415-16425 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T100 16449-16457 Chemical denotes polyenes http://purl.obolibrary.org/obo/CHEBI_48121
T101 16462-16468 Chemical denotes azoles http://purl.obolibrary.org/obo/CHEBI_68452
T102 16472-16480 Chemical denotes polyenes http://purl.obolibrary.org/obo/CHEBI_48121
T103 16486-16499 Chemical denotes echinocandins http://purl.obolibrary.org/obo/CHEBI_57248
T104 17464-17472 Chemical denotes dextrose http://purl.obolibrary.org/obo/CHEBI_17634
T105 17473-17477 Chemical denotes agar http://purl.obolibrary.org/obo/CHEBI_2509
T106 17594-17604 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T107 17697-17712 Chemical denotes polysaccharides http://purl.obolibrary.org/obo/CHEBI_18154
T108 17797-17800 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T109 17856-17863 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T110 18019-18022 Chemical denotes LFA http://purl.obolibrary.org/obo/CHEBI_139482
T111 18140-18143 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T112 18378-18381 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T113 18465-18470 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T114 18602-18609 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T115 19028-19030 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T116 19124-19138 Chemical denotes amphotericin B http://purl.obolibrary.org/obo/CHEBI_2682
T117 19139-19151 Chemical denotes deoxycholate http://purl.obolibrary.org/obo/CHEBI_23614
T118 19158-19169 Chemical denotes flucytosine http://purl.obolibrary.org/obo/CHEBI_5100
T119 19183-19194 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T120 19220-19231 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T121 19234-19245 Chemical denotes flucytosine http://purl.obolibrary.org/obo/CHEBI_5100
T122 19249-19263 Chemical denotes amphotericin B http://purl.obolibrary.org/obo/CHEBI_2682
T123 19264-19276 Chemical denotes deoxycholate http://purl.obolibrary.org/obo/CHEBI_23614
T124 19279-19290 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T125 19321-19332 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T126 19335-19338 Chemical denotes iii http://purl.obolibrary.org/obo/CHEBI_74062
T127 19389-19400 Chemical denotes fluconazole http://purl.obolibrary.org/obo/CHEBI_46081
T128 19976-19978 Chemical denotes GC http://purl.obolibrary.org/obo/CHEBI_73890
T129 20208-20214 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T130 20216-20229 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 4800-4813 http://purl.obolibrary.org/obo/GO_0016046 denotes detect fungus
T2 7916-7927 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation
T3 17364-17371 http://purl.obolibrary.org/obo/GO_0007114 denotes budding
T4 17922-17935 http://purl.obolibrary.org/obo/GO_0007157 denotes agglutination
T5 17922-17935 http://purl.obolibrary.org/obo/GO_0000752 denotes agglutination
T6 19737-19766 http://purl.obolibrary.org/obo/GO_0002443 denotes cell-mediated immune response
T7 19751-19766 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T3 6303-6305 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T4 9496-9498 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T5 20216-20229 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T2 6288-6301 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T10 0-77 Sentence denotes The Global Popularity of COVID-19 and the Possibility of Fungal Co-infections
T11 78-287 Sentence denotes As the human-to-human transmitted disease, coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has been an emergency global public health events [1, 2].
T12 288-451 Sentence denotes Till May 18th, 2020, the COVID-19 has rapidly spread to 212 countries and caused nearly 5 million laboratory-confirmed cases and more than 310,000 deaths globally.
T13 452-647 Sentence denotes Like SARS-CoV and Middle East Respiratory Syndrome Coronavirus (MERS-CoV), SARS-CoV-2 is responsible for lower respiratory infection and can cause Acute Respiratory Distress Syndromes (ARDS) [3].
T14 648-818 Sentence denotes Besides, the diffuse alveolar damage with severe inflammatory exudation, COVID-19 patients always have immunosuppression with a decrease in CD4 + T and CD8 + T cells [4].
T15 819-1078 Sentence denotes Critically ill patients, especially the patients who were admitted to the intensive care unit (ICU) and required mechanical ventilation, or had a longer duration of hospital stays, even as long as 50 days, were more likely to develop fungal co-infections [5].
T16 1079-1259 Sentence denotes Hence, it is important to notice that COVID-19 patients can develop further fungal infections during the middle and latter stages of this disease, especially severely ill ones [6].
T17 1261-1318 Sentence denotes Epidemiology of Fungal Co-infections in COVID-19 Patients
T18 1319-1696 Sentence denotes To analyze the incidence of fungal co-infections in COVID-19 patients, we searched PubMed, Scopus, Embase, and Web of Science, using the keywords “fungi” OR “fungus” OR “fungal infection” OR “invasive fungal diseases” OR “secondary infection” AND “COVID-19” OR “SARS-CoV-2” OR “2019-nCoV” OR “2019 novel coronavirus” without date (up to May 18, 2020) and language restrictions.
T19 1697-1795 Sentence denotes We also searched CNKI and Wanfang Data using the same terms in Chinese, with no time restrictions.
T20 1796-1936 Sentence denotes The title, abstract, and full text of related articles determined according to these search criteria were carefully reviewed by the authors.
T21 1937-2094 Sentence denotes Unfortunately, we have found very few articles reporting on fungal co-infections, not only that, some studies have not provided the details of the pathogens.
T22 2095-2237 Sentence denotes Even so, we found COVID-19 patients, especially severely ill ones or accompanied with immunocompromised state, had co-infections of fungi [7].
T23 2238-2485 Sentence denotes In China, Chen et al. performed fungal culture on all 99 COVID-19 patients at admission and found five (5%, 5/99) cases of fungal infection, including one case of Aspergillus flavus, one case of Candida glabrata and three cases of C. albicans [8].
T24 2486-2641 Sentence denotes Yang et al. found there (3/52, 5.8%) patients had fungal co-infection in 52 critically ill patients, including A. flavus, A. fumigatus and C. albicans [5].
T25 2642-2819 Sentence denotes Other China studies have found a higher percentage of secondary infections (8–15%) in COVID-19 patients, but it is not clear whether it is bacterial or fungal infection [9, 10].
T26 2820-3066 Sentence denotes In addition, one study mentioned that 2.8% (31/1099) patients were treated with antifungal medicine, including 1.9% (18/926) non-severe patients and 7.5% (13/173) severe patients, but there was no etiological evidence of fungal co-infection [11].
T27 3067-3162 Sentence denotes Another study mentioned there was no patient treated with antifungal medicine in 149 cases [4].
T28 3163-3345 Sentence denotes A German study found COVID-19 associated invasive pulmonary aspergillosis (IPA) was found in five (26.3%) of 19 consecutive critically ill patients with moderate to severe ARDS [12].
T29 3346-3475 Sentence denotes In Netherlands, there were six patients (19.4%) presumed IPA in 31 ICU patients, of which five were identified A. fumigatus [13].
T30 3476-3634 Sentence denotes Besides, among the 5 first well-described French COVID-19 patients, an old severely ill man was co-infected with A. flavus by tracheal aspirates culture [14].
T31 3636-3730 Sentence denotes Neglected Fungal Co-infection in COVID-19 Patients by Suggestive Ideas from SARS and Influenza
T32 3731-3884 Sentence denotes Studies have shown that SARS-CoV and SARS-CoV-2 belong to the same species and have the similar prevalence, biological and clinical characteristics [15].
T33 3885-4185 Sentence denotes Looking back on SARS in 2003, we found the incidence of fungal infection in SARS patients was 14.8–27%, which was even higher in severely ill ones, up to 21.9–33% [16, 17], meanwhile, fungal infection was the main cause of death for SARS patients, accounting for 25–73.7% in all causes of death [18].
T34 4186-4334 Sentence denotes Besides, in the past decade, increasing reports of severe influenza pneumonia resulting in ARDS complicated by fungal infection were published [19].
T35 4335-4552 Sentence denotes One research found IPA was diagnosed in 83 (19%) of 432 patients admitted with influenza, which was higher in immunocompromised patients (32%), and in the event of IPA, the mortality will increase from 28 to 51% [20].
T36 4553-4676 Sentence denotes However, as for fungal co-infection in COVID-19 patients, only few studies have reported it, which may have been neglected.
T37 4677-4855 Sentence denotes Clinically, many COVID-19 patients did not undergo sputum fungal assessment at the beginning, moreover, it is difficult to detect fungus with a single sputum fungal culture [11].
T38 4856-5164 Sentence denotes With the disease aggravating, it is easy to attribute the severe respiratory symptoms to COVID-19, at the most considering of the co-infection with bacterium or even mycoplasma [21] which usually leads to the in-time use of antibiotics, while the diagnosis of fungal infection is always delayed or neglected.
T39 5165-5385 Sentence denotes Based on the experience of SARS in 2003 and the cases of invasive aspergillosis combined with severe influenza, it is critically important to pay attention to the probability of COVID-19 accompanied by fungal infections.
T40 5387-5471 Sentence denotes Clinical and Diagnostic Perspective of COVID-19 Associated with Fungal Co-infections
T41 5472-5562 Sentence denotes As the ongoing COVID-19 pandemic, more and more experts are aware of fungal co-infections.
T42 5563-5688 Sentence denotes The French High Council for Public Health recommended to systematically screen for fungal pathogens in COVID-19 patients [6].
T43 5689-5915 Sentence denotes Lanjuan Li academician and her colleagues who have accumulated experience with severe COVID-19 treatment, reminded clinicians should focus on patients’ fungal infections, especially severely ill or immunocompromised ones [22].
T44 5916-6035 Sentence denotes At the early phase of the disease or with extrapulmonary fungal infections, it may present with atypical chest imaging.
T45 6036-6642 Sentence denotes Hence, it is necessary for severely ill patients to receive fungal pathogens surveillance, including (i) etiological examination: direct microscopy and culture; (ii) histopathology; (iii) serology: antigen and antibody, (1,3)-β-d-glucan (BDG) [23] and galactomannan (GM) detection by serum are also need to be tested for suspicious patients, while bronchoalveolar lavage fluid (BALF) and tracheal aspirate (TA) sampling for culture and biomarker testing should be performed under well-protected conditions due to the risk of aerosol spreading and health care worker infections [24]; (iv) PCR-based methods:
T46 6643-6782 Sentence denotes Real-time polymerase chain reaction (PCR) techniques and molecular identification can be performed to identify pathogens if necessary [25].
T47 6783-6913 Sentence denotes After identifying the pathogen, the antifungal susceptibility testing (AST) can be performed to select sensitive antifungal drugs.
T48 6914-6981 Sentence denotes If the AST cannot be carried out, it should be treated empirically.
T49 6982-7089 Sentence denotes The main fungal pathogens for fungal co-infections in severe COVID-19 patients are Aspergillus and Candida.
T50 7090-7221 Sentence denotes Other infrequent opportunistic pathogenic fungus caused lung infections also need to be considered, such as Mucor and Cryptococcus.
T51 7223-7250 Sentence denotes Invasive Aspergillosis (IA)
T52 7251-7394 Sentence denotes Aspergillus species could be an important cause of life-threatening infection in COVID-19 patients, especially in those with high risk factors.
T53 7395-7713 Sentence denotes The potential risk factors for the patients include GC use, prolonged neutropenia, chronic obstructive pulmonary disease (COPD), allogeneic hematopoietic stem cell transplant (allo-HSCT) [26], solid organ transplant (SOT) [27], inherited immunodeficiencies, hemopoietic malignancy (HM), cystic fibrosis (CF) [28], etc.
T54 7714-7973 Sentence denotes The diagnosis of IA requires a microbiologic and/or histopathologic evidence, although specimen acquisition is challenging in many patients because lung biopsy might be contraindicated in patients with coagulation disorders or severe respiratory failure [13].
T55 7974-8452 Sentence denotes Histopathologic examination mainly rely on finding special fungal stains on lung fluid or tissue when a fungal infection is suspected and may reveal the characteristic acute angle branching septate hyphae of Aspergillus spp., and Grocott-Gomori’s methenamine-silver stain (GMS) and periodic acid-Schiff (PAS) stains of fixed tissue will helpful, while it is difficult to distinguish Aspergillus spp. from other filamentous fungi such as Fusarium spp. and Scedosporium spp. [29].
T56 8453-9802 Sentence denotes Therefore, it is necessary to have a definitive confirmation by culture or nonculture technique, including (i) direct microscopic examination with the optical brightener methods, Calcofluor or Blankophor, which may increase the sensitivity and specificity for detecting Aspergillus-like features; (ii) culture on fungal-specific media at 37 °C for 2–5 days, if positive, morphological features of Aspergillus can be identified under the microscope or the DNA sequencing may be used in reference laboratories to identify the species accurately, but usually culture yield is low and a negative result does not exclude the diagnosis of IA; (iii) molecular assays targeting ribosomal DNA (rDNA) sequences can also be used for detection of Aspergillus in tissues or BALF, especially PCR-based assays can be used to detect Aspergillus spp. and CYP51A resistance mutations in A. fumigatus, although these methods have not been standardized or limited by laboratory conditions or proven commercial reagents in some countries [30]; (iv) serum and BALF GM testing are also recommended as an early and accurate marker using less invasive techniques for the diagnosis, especially in neutropenic patients, with advantages of less injury and time-efficient, though sometimes this test in blood samples are less sensitive than cultures of respiratory samples [25].
T57 9803-10086 Sentence denotes The treatment recommendations can be supported by the 2016 Update guideline by the Infectious Diseases Society of America that the prophylaxis, therapeutic medication, combined, and alternative medication of aspergillus infection have been given more detailed guidance opinions [30].
T58 10087-10311 Sentence denotes Generally, drugs recommended for the treatment and prophylaxis of IA include triazoles (itraconazole, voriconazole, posaconazole, esaconazole), Amphotericin B and its liposomes and echinococcins (micafungin or carpofenjing).
T59 10312-10501 Sentence denotes Most patients can choose triazole drugs to treat IA, however, therapeutic drug monitoring (TDM) is recommended and the interaction between azoles and other drugs should be fully considered.
T60 10503-10528 Sentence denotes Invasive Candidiasis (IC)
T61 10529-10858 Sentence denotes For the severe COVID-19 patients who have more opportunities to be treat with broad-spectrum antibacterial drugs, parenteral nutrition and invasive examinations, or the patients accompanied with prolonged neutropenia and other immune impairment factors, the risk of infection with Candida species may significantly increase [31].
T62 10859-11247 Sentence denotes Diagnosis of IC depends on culture methods including culture of blood or other samples collected under sterile conditions which are usually considered as gold standards for IC, and nonculture diagnostic tests including mannan and antimannan IgG tests, C. albicans germ tube antibody (CAGTA), BDG and PCR-based assays, which are now entering clinical practice as adjuncts to cultures [32].
T63 11248-11775 Sentence denotes There are mainly two disadvantages about blood culture, on the one hand, the blood culture time is long, because the average positive alarm time is 2–3 days (range 1 to ≥ 7 days), plus identification and susceptibility test duration 4 to 6 days, on the other hand, it is not sensitive than PCR with much lower detection limit when Candida concentration is ≤ 1 CFU/mL and easy to have failure to detect in extremely low concentrations of candidiasis, intermittent candidiasis or deep Candida infection has not entered the blood.
T64 11776-11923 Sentence denotes Hence, several nonculture diagnostic tests are recommended, but also there is widespread uncertainty about their utility in clinical practice [31].
T65 11924-12201 Sentence denotes BDG is a major cell wall constituent of Candida and most pathogenic fungi, excluding Cryptococcus species, Blastomyces species, and Mucorales, which is widely used in clinical and well recommended by detecting serum, but cannot distinguish between Candida and other fungi [25].
T66 12202-12392 Sentence denotes Besides, mannan and antimannan IgG tests, CAGTA are employed at many European centers, and higher sensitivity and specificity by a combination with mannan/antimannan assay are observed [33].
T67 12393-12670 Sentence denotes There are promising PCR tests, including multiplex-PCR platforms, at the same time, it exists some limitations for a lack of multicenter validation of assay performance, so there are no FDA-cleared PCR assays for Candida, but commercial and in-house tests are widely available.
T68 12671-12832 Sentence denotes Further, T2 magnetic resonance is also can be used by amplifying and detecting Candida DNA, but its feasibility in early diagnosis of candidemia remains unclear.
T69 12833-13171 Sentence denotes MALDI-TOF technology is available in more hospitals with the biggest advantage of its promptness taking no more than 5 min to identify a microorganism from isolated colonies, even researchers have developed protocols to identify yeasts directly from positive blood culture bottles within half an hour without performing a subculture [32].
T70 13172-13461 Sentence denotes Overall, not only it is necessary to fully realize the benefits of combining culture and nonculture methods, but also, clinicians must take the types of IC, the strengths and limitations of each assay and the context of the clinical setting into account to have a judicious interpretation.
T71 13462-13621 Sentence denotes Besides, susceptibility test is recommended for all blood-stream and other clinically relevant Candida isolates, especially for C. glabrata or C. parapsilosis.
T72 13622-13870 Sentence denotes The treatment recommendations can be supported by the 2016 Update guideline by the Infectious Diseases Society of America that the therapeutic and alternative medication of candidiasis infection have been given more detailed guidance opinions [34].
T73 13871-14183 Sentence denotes Generally, patients who are suspected or confirmed with IC should be treated with echinocandin (caspofungin, micafungin, and anidulafungin), azoles (fluconazole, voriconazole, itraconazole), and Amphotericin B and its liposomes, what’s more, TDM for azoles should be used to optimize efficacy and limit toxicity.
T74 14185-14206 Sentence denotes Invasive Mucormycosis
T75 14207-14352 Sentence denotes COVID-19 patients with trauma, diabetes mellitus, GC use, HM, prolonged neutropenia, allo-HSCT, SOT are more likely to develop mucormycosis [35].
T76 14353-14611 Sentence denotes Mucormycosis is usually suspected based on results of direct microscopy or plus fluorescent brighteners from clinical specimens such as sputum, BALF, and skin lesions that Mucorales hyphae are non-septate or pauci-septatethe with a variable width of 6–16 μm.
T77 14612-14772 Sentence denotes To confirm the diagnosis, non-pigmented hyphae showing tissue invasion should be shown in tissue sections stained with hematoxylin–eosin (HE), PAS, or GMS [36].
T78 14773-14868 Sentence denotes Culture of specimens is strongly recommended for identification of genus and species, also AST.
T79 14869-15142 Sentence denotes What’s more, it is suggested to be cultured at 30 °C and 37 °C separately that typically cottony white or grayish black colony usually will be found, afterward morphological identification of fungi or DNA sequencing based on bar code genes, such as 18S, ITS, 28 s, or rDNA.
T80 15143-15299 Sentence denotes MALDI-TOF identification is just moderately supported because it depends mainly on in-house databases, and many laboratories do not have this capacity [37].
T81 15300-15510 Sentence denotes Further, it is promising to detect fungi DNA, in serum as well as in other body fluids, even in paraffin-embedded tissue, however, because of lack of standardization supported it is only with moderate strength.
T82 15511-15867 Sentence denotes The treatment recommendations can be supported by the global guideline for the diagnosis and management of mucormycosis in 2019 by European Confederation of Medical Mycology (ECMM) and Mycoses Study Group Education and Research Consortium that the therapeutic and alternative medication of mucormycosis have been given more detailed guidance opinions [35].
T83 15868-16018 Sentence denotes Generally, it strongly supports an early complete surgical treatment for mucormycosis whenever possible, in addition to systemic antifungal treatment.
T84 16019-16159 Sentence denotes In neutropenic patients, those with graft-versus-host disease or high risk factor, primary prophylaxis with posaconazole may be recommended.
T85 16160-16365 Sentence denotes Amphotericin B lipid complex, liposomal Amphotericin B and posaconazole oral suspension are treated as the first-line antifungal monotherapy, while isavuconazole is strongly supported as salvage treatment.
T86 16366-16500 Sentence denotes There are no convincing data to guide the use of antifungal combination therapy of polyenes and azoles or polyenes plus echinocandins.
T87 16502-16525 Sentence denotes Invasive Cryptococcosis
T88 16526-16781 Sentence denotes COVID-19 patients with human immunodeficiency virus (HIV) infection accompanied by CD4 + T-lymphocyte count < 200 cells/μL, allo-HSCT, SOT, or other immune impaired are susceptible to cryptococcosis which predominantly present as meningoencephalitis [38].
T89 16782-17045 Sentence denotes Given the complexities surrounding the diagnosis of cryptococcosis and identification of Cryptococcus species including C. neoformans and C. gattii species, the diagnosis of cryptococcosis is usually based on a combination of clinical and laboratory confirmation.
T90 17046-17170 Sentence denotes The methods used to confirm the infection are culture, direct microscopy, histopathology, serology, and molecular detection.
T91 17171-17413 Sentence denotes To diagnose cryptococcosis, specimen from cerebrospinal fluid (CSF) can be mixed with India ink and observed under a microscope that the distinctive structure for Cryptococcus spp. with narrow budding encapsulated yeasts usually can be found.
T92 17414-17541 Sentence denotes Samples for culture should be placed on Sabouraud dextrose agar at 30 °C for 7 days, in aerobic conditions, and observed daily.
T93 17542-17639 Sentence denotes Moreover, cultures from patients receiving systemic antifungal therapy might need longer to grow.
T94 17640-17687 Sentence denotes Cryptococcus appears as mucoid creamy colonies.
T95 17688-17825 Sentence denotes Capsular polysaccharides of Cryptococcus can be detected and quantified from body fluids such as serum, CSF, BAL, or pathological tissue.
T96 17826-18024 Sentence denotes Three formats of cryptococcal antigen (CrAg) detection tests are currently available: the latex agglutination test (LAT), the enzyme-linked immunoassay (EIA), and the lateral flow immunoassay (LFA).
T97 18025-18175 Sentence denotes These methods are rapid, sensitive, and specific, but have not been standardized for respiratory specimens such as BAL, pleural fluid, or sputum [32].
T98 18176-18329 Sentence denotes Molecular detection of Cryptococcus is required in specific situations where other diagnostic tools have failed to confirm a diagnosis of cryptococcosis.
T99 18330-18489 Sentence denotes These molecular methods include pan-fungal PCR, DNA sequencing for identification, multiplex PCR, isothermal amplification method, and probe-based microarrays.
T100 18490-18648 Sentence denotes Once a diagnosis cryptococcosis is made, a lumbar puncture and cerebrospinal fluid (CSF) examination (including antigen) are recommended in all patients [39].
T101 18649-18742 Sentence denotes Cryptococcus can disseminate into the central nervous system causing cryptococcal meningitis.
T102 18743-19033 Sentence denotes The treatment recommendations can be supported by guidelines for the diagnosis, prevention, and management of cryptococcal disease in HIV-infected adults, adolescents, and children in 2018 by World Health Organization (from: https://www.who.int/hiv/pub/guidelines/cryptococcal-disease/en/).
T103 19034-19401 Sentence denotes Generally, the following is recommended as the preferred regimen: (i) Induction phase for amphotericin B deoxycholate and + flucytosine, followed by fluconazole; alternative options for fluconazole + flucytosine or amphotericin B deoxycholate + fluconazole. (ii) Consolidation phase for fluconazole. (iii) Maintenance (or secondary prophylaxis) phase for fluconazole.
T104 19403-19410 Sentence denotes Summary
T105 19411-19605 Sentence denotes By analyzing retrospective analysis of SARS and influenza data from China and worldwide, we surmise that the fungal co-infections associated with global COVID-19 might be missed or misdiagnosed.
T106 19606-19868 Sentence denotes Further, as a life-threatening infectious disease, COVID-19 patients showed overexpression of inflammatory cytokines, and impaired cell-mediated immune response with decreased CD4 + T and CD8 + T cell counts, indicating its susceptibility to fungal co-infection.
T107 19869-20088 Sentence denotes Moreover, COVID-19 patients accompanied with immunocompromised state, such as prolonged neutropenia, HSCT, GC use, SOT, inherited or acquired immunodeficiencies, and tumor are more likely to develop fungal co-infection.
T108 20089-20327 Sentence denotes Here, we summarized updated diagnostic information (histopathology, direct microscopic examination, culture, (1,3)-β-d-glucan, galactomannan, PCR-based assays, MALDI-TOF technology, etc.) and treatment recommendations of invasive mycosis.
T109 20328-20559 Sentence denotes We suggest it is prudent to assess the risk factors, the types of invasive mycosis, the strengths and limitations of diagnostic methods, clinical settings, and the need for standard or individualized treatment in COVID-19 patients.
T110 20560-20777 Sentence denotes Finally, provide a clinical flow diagram (Fig. 1) to assist the clinicians and laboratory experts in the management of aspergillosis, candidiasis, mucormycosis, or cryptococcosis as comorbidities in COVID-19 patients.
T111 20778-20852 Sentence denotes Fig. 1 Diagnostic and therapeutic pathway for invasive fungal co-infection

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 563-584 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T2 605-625 Phenotype denotes Respiratory Distress http://purl.obolibrary.org/obo/HP_0002098
T3 661-684 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T4 3204-3236 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T5 3238-3241 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T6 3403-3406 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T7 4254-4263 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 4354-4357 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T9 4499-4502 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T10 7465-7476 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T11 7478-7515 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T12 7517-7521 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T13 7633-7651 Phenotype denotes immunodeficiencies http://purl.obolibrary.org/obo/HP_0002721
T14 7948-7967 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T15 10734-10745 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T16 14238-14255 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T17 14279-14290 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T18 16555-16571 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T19 18718-18741 Phenotype denotes cryptococcal meningitis http://purl.obolibrary.org/obo/HP_0032160
T20 19957-19968 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T21 20011-20029 Phenotype denotes immunodeficiencies http://purl.obolibrary.org/obo/HP_0002721
T22 20035-20040 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664

2_test

Id Subject Object Predicate Lexical cue
32737747-32015507-73473585 281-282 32015507 denotes 1
32737747-32123347-73473586 284-285 32123347 denotes 2
32737747-32910461-73473587 644-645 32910461 denotes 3
32737747-32731000-73473588 815-816 32731000 denotes 4
32737747-32598906-73473589 1075-1076 32598906 denotes 5
32737747-32334948-73473590 1256-1257 32334948 denotes 6
32737747-31849894-73473591 2234-2235 31849894 denotes 7
32737747-32007143-73473592 2482-2483 32007143 denotes 8
32737747-32598906-73473593 2638-2639 32598906 denotes 5
32737747-31986264-73473594 2812-2813 31986264 denotes 9
32737747-32253449-73473595 2815-2817 32253449 denotes 10
32737747-32220206-73473596 3062-3064 32220206 denotes 11
32737747-32731000-73473597 3159-3160 32731000 denotes 4
32737747-32339350-73473598 3341-3343 32339350 denotes 12
32737747-32687390-73473599 3471-3473 32687390 denotes 13
32737747-32224310-73473600 3630-3632 32224310 denotes 14
32737747-32086938-73473601 3880-3882 32086938 denotes 15
32737747-14552675-73473602 4181-4183 14552675 denotes 18
32737747-32160910-73473603 4330-4332 32160910 denotes 19
32737747-30076119-73473604 4548-4550 30076119 denotes 20
32737747-32220206-73473605 4851-4853 32220206 denotes 11
32737747-30506286-73473606 5034-5036 30506286 denotes 21
32737747-32334948-73473607 5685-5686 32334948 denotes 6
32737747-32275128-73473608 5911-5913 32275128 denotes 22
32737747-28378239-73473609 6280-6282 28378239 denotes 23
32737747-32395423-73473610 6614-6616 32395423 denotes 24
32737747-28124219-73473611 7583-7585 28124219 denotes 26
32737747-32233057-73473612 7618-7620 32233057 denotes 27
32737747-32303430-73473613 7704-7706 32303430 denotes 28
32737747-32687390-73473614 7969-7971 32687390 denotes 13
32737747-22517788-73473615 8448-8450 22517788 denotes 29
32737747-27365388-73473616 9471-9473 27365388 denotes 30
32737747-27365388-73473617 10082-10084 27365388 denotes 30
32737747-29444828-73473618 10854-10856 29444828 denotes 31
32737747-28882009-73473619 11243-11245 28882009 denotes 32
32737747-29444828-73473620 11919-11921 29444828 denotes 31
32737747-21143834-73473621 12388-12390 21143834 denotes 33
32737747-28882009-73473622 13167-13169 28882009 denotes 32
32737747-26679628-73473623 13866-13868 26679628 denotes 34
32737747-31699664-73473624 14348-14350 31699664 denotes 35
32737747-29538730-73473625 14768-14770 29538730 denotes 36
32737747-30203997-73473626 15295-15297 30203997 denotes 37
32737747-31699664-73473627 15863-15865 31699664 denotes 35
32737747-30329097-73473628 16777-16779 30329097 denotes 38
32737747-28882009-73473629 18171-18173 28882009 denotes 32
32737747-29663539-73473630 18644-18646 29663539 denotes 39