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PMC:7394275 / 1230-2579 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T18 84-92 SP_7 denotes COVID-19
T19 129-137 SP_7 denotes COVID-19
T20 189-194 SP_6;NCBITaxon:9606 denotes human
T21 198-203 SP_6;NCBITaxon:9606 denotes human
T22 225-236 NCBITaxon:11118 denotes coronavirus
T23 251-259 SP_7 denotes COVID-19
T24 272-284 SP_7 denotes severe acute
T25 285-296 SP_7;UBERON:0001004 denotes respiratory
T26 297-319 SP_7 denotes syndrome coronavirus 2
T27 321-331 SP_7 denotes SARS-CoV-2
T28 417-425 SP_7 denotes COVID-19
T29 539-545 GO:0016265 denotes deaths
T30 561-569 SP_10 denotes SARS-CoV
T31 574-618 SP_9 denotes Middle East Respiratory Syndrome Coronavirus
T32 620-628 SP_9 denotes MERS-CoV
T33 631-641 SP_7 denotes SARS-CoV-2
T34 667-678 UBERON:0001004 denotes respiratory
T35 773-781 UBERON:0003215 denotes alveolar
T36 825-833 SP_7 denotes COVID-19
T37 855-872 CHEBI:35705;CHEBI:35705 denotes immunosuppression
T38 892-895 PR:000001004 denotes CD4
T39 910-917 CL:0000084 denotes T cells
T40 997-1016 UBERON:0007221 denotes intensive care unit
T41 1157-1163 NCBITaxon:4751 denotes fungal
T42 1221-1229 SP_7 denotes COVID-19
T43 1259-1265 NCBITaxon:4751 denotes fungal
T75612 84-92 SP_7 denotes COVID-19
T52117 129-137 SP_7 denotes COVID-19
T87926 189-194 SP_6;NCBITaxon:9606 denotes human
T44317 198-203 SP_6;NCBITaxon:9606 denotes human
T51260 225-236 NCBITaxon:11118 denotes coronavirus
T60002 251-259 SP_7 denotes COVID-19
T53048 272-284 SP_7 denotes severe acute
T10983 285-296 SP_7;UBERON:0001004 denotes respiratory
T18020 297-319 SP_7 denotes syndrome coronavirus 2
T39408 321-331 SP_7 denotes SARS-CoV-2
T58688 417-425 SP_7 denotes COVID-19
T97901 539-545 GO:0016265 denotes deaths
T15306 561-569 SP_10 denotes SARS-CoV
T84834 574-618 SP_9 denotes Middle East Respiratory Syndrome Coronavirus
T47132 620-628 SP_9 denotes MERS-CoV
T93587 631-641 SP_7 denotes SARS-CoV-2
T30768 667-678 UBERON:0001004 denotes respiratory
T38817 773-781 UBERON:0003215 denotes alveolar
T68441 825-833 SP_7 denotes COVID-19
T85434 855-872 CHEBI:35705;CHEBI:35705 denotes immunosuppression
T96661 892-895 PR:000001004 denotes CD4
T91572 910-917 CL:0000084 denotes T cells
T27673 997-1016 UBERON:0007221 denotes intensive care unit
T544 1157-1163 NCBITaxon:4751 denotes fungal
T63230 1221-1229 SP_7 denotes COVID-19
T67064 1259-1265 NCBITaxon:4751 denotes fungal

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 773-781 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T2 912-917 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
33 93-101 Species denotes patients Tax:9606
48 3-16 Disease denotes aspergillosis MESH:D001228
49 18-29 Disease denotes candidiasis MESH:D002177
50 48-62 Disease denotes cryptococcosis MESH:D003453
51 84-92 Disease denotes COVID-19 MESH:C000657245
54 129-137 Disease denotes COVID-19 MESH:C000657245
55 161-181 Disease denotes Fungal Co-infections MESH:D060085
81 892-895 Gene denotes CD4 Gene:920
82 904-907 Gene denotes CD8 Gene:925
83 189-194 Species denotes human Tax:9606
84 198-203 Species denotes human Tax:9606
85 272-319 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
86 321-331 Species denotes SARS-CoV-2 Tax:2697049
87 561-569 Species denotes SARS-CoV Tax:694009
88 574-629 Species denotes Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Tax:1335626
89 631-641 Species denotes SARS-CoV-2 Tax:2697049
90 834-842 Species denotes patients Tax:9606
91 938-946 Species denotes patients Tax:9606
92 963-971 Species denotes patients Tax:9606
93 1230-1238 Species denotes patients Tax:9606
94 225-249 Disease denotes coronavirus disease 2019 MESH:C000657245
95 251-259 Disease denotes COVID-19 MESH:C000657245
96 417-425 Disease denotes COVID-19 MESH:C000657245
97 539-545 Disease denotes deaths MESH:D003643
98 667-688 Disease denotes respiratory infection MESH:D012141
99 703-739 Disease denotes Acute Respiratory Distress Syndromes MESH:D012128
100 741-745 Disease denotes ARDS MESH:D012128
101 825-833 Disease denotes COVID-19 MESH:C000657245
102 923-937 Disease denotes Critically ill MESH:D016638
103 1164-1177 Disease denotes co-infections MESH:D060085
104 1221-1229 Disease denotes COVID-19 MESH:C000657245
105 1266-1276 Disease denotes infections MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 3-16 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T19 18-29 Disease denotes candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T20 31-43 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T21 48-62 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T22 84-92 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 129-137 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 171-181 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T25 225-249 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T26 251-259 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 272-319 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T28 272-305 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T29 321-329 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 417-425 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 561-569 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 631-639 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 667-688 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T34 679-688 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 703-739 Disease denotes Acute Respiratory Distress Syndromes http://purl.obolibrary.org/obo/MONDO_0006502
T36 709-739 Disease denotes Respiratory Distress Syndromes http://purl.obolibrary.org/obo/MONDO_0009971
T37 741-745 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T38 825-833 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 1167-1177 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T40 1221-1229 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 1259-1276 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T7 189-194 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T8 198-203 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T9 334-337 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 426-429 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 878-879 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 892-895 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T13 904-907 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T14 910-917 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T15 1067-1068 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T4 168-170 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T10 104-181 Sentence denotes The Global Popularity of COVID-19 and the Possibility of Fungal Co-infections
T11 182-391 Sentence denotes As the human-to-human transmitted disease, coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has been an emergency global public health events [1, 2].
T12 392-555 Sentence denotes Till May 18th, 2020, the COVID-19 has rapidly spread to 212 countries and caused nearly 5 million laboratory-confirmed cases and more than 310,000 deaths globally.
T13 556-751 Sentence denotes Like SARS-CoV and Middle East Respiratory Syndrome Coronavirus (MERS-CoV), SARS-CoV-2 is responsible for lower respiratory infection and can cause Acute Respiratory Distress Syndromes (ARDS) [3].
T14 752-922 Sentence denotes Besides, the diffuse alveolar damage with severe inflammatory exudation, COVID-19 patients always have immunosuppression with a decrease in CD4 + T and CD8 + T cells [4].
T15 923-1182 Sentence denotes Critically ill patients, especially the patients who were admitted to the intensive care unit (ICU) and required mechanical ventilation, or had a longer duration of hospital stays, even as long as 50 days, were more likely to develop fungal co-infections [5].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 667-688 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T2 709-729 Phenotype denotes Respiratory Distress http://purl.obolibrary.org/obo/HP_0002098
T3 765-788 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006

2_test

Id Subject Object Predicate Lexical cue
32737747-32015507-73473585 385-386 32015507 denotes 1
32737747-32123347-73473586 388-389 32123347 denotes 2
32737747-32910461-73473587 748-749 32910461 denotes 3
32737747-32731000-73473588 919-920 32731000 denotes 4
32737747-32598906-73473589 1179-1180 32598906 denotes 5