
PMC:7394275 / 1230-2579
Annnotations
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18 | 84-92 | SP_7 | denotes | COVID-19 |
T19 | 129-137 | SP_7 | denotes | COVID-19 |
T20 | 189-194 | SP_6;NCBITaxon:9606 | denotes | human |
T21 | 198-203 | SP_6;NCBITaxon:9606 | denotes | human |
T22 | 225-236 | NCBITaxon:11118 | denotes | coronavirus |
T23 | 251-259 | SP_7 | denotes | COVID-19 |
T24 | 272-284 | SP_7 | denotes | severe acute |
T25 | 285-296 | SP_7;UBERON:0001004 | denotes | respiratory |
T26 | 297-319 | SP_7 | denotes | syndrome coronavirus 2 |
T27 | 321-331 | SP_7 | denotes | SARS-CoV-2 |
T28 | 417-425 | SP_7 | denotes | COVID-19 |
T29 | 539-545 | GO:0016265 | denotes | deaths |
T30 | 561-569 | SP_10 | denotes | SARS-CoV |
T31 | 574-618 | SP_9 | denotes | Middle East Respiratory Syndrome Coronavirus |
T32 | 620-628 | SP_9 | denotes | MERS-CoV |
T33 | 631-641 | SP_7 | denotes | SARS-CoV-2 |
T34 | 667-678 | UBERON:0001004 | denotes | respiratory |
T35 | 773-781 | UBERON:0003215 | denotes | alveolar |
T36 | 825-833 | SP_7 | denotes | COVID-19 |
T37 | 855-872 | CHEBI:35705;CHEBI:35705 | denotes | immunosuppression |
T38 | 892-895 | PR:000001004 | denotes | CD4 |
T39 | 910-917 | CL:0000084 | denotes | T cells |
T40 | 997-1016 | UBERON:0007221 | denotes | intensive care unit |
T41 | 1157-1163 | NCBITaxon:4751 | denotes | fungal |
T42 | 1221-1229 | SP_7 | denotes | COVID-19 |
T43 | 1259-1265 | NCBITaxon:4751 | denotes | fungal |
T75612 | 84-92 | SP_7 | denotes | COVID-19 |
T52117 | 129-137 | SP_7 | denotes | COVID-19 |
T87926 | 189-194 | SP_6;NCBITaxon:9606 | denotes | human |
T44317 | 198-203 | SP_6;NCBITaxon:9606 | denotes | human |
T51260 | 225-236 | NCBITaxon:11118 | denotes | coronavirus |
T60002 | 251-259 | SP_7 | denotes | COVID-19 |
T53048 | 272-284 | SP_7 | denotes | severe acute |
T10983 | 285-296 | SP_7;UBERON:0001004 | denotes | respiratory |
T18020 | 297-319 | SP_7 | denotes | syndrome coronavirus 2 |
T39408 | 321-331 | SP_7 | denotes | SARS-CoV-2 |
T58688 | 417-425 | SP_7 | denotes | COVID-19 |
T97901 | 539-545 | GO:0016265 | denotes | deaths |
T15306 | 561-569 | SP_10 | denotes | SARS-CoV |
T84834 | 574-618 | SP_9 | denotes | Middle East Respiratory Syndrome Coronavirus |
T47132 | 620-628 | SP_9 | denotes | MERS-CoV |
T93587 | 631-641 | SP_7 | denotes | SARS-CoV-2 |
T30768 | 667-678 | UBERON:0001004 | denotes | respiratory |
T38817 | 773-781 | UBERON:0003215 | denotes | alveolar |
T68441 | 825-833 | SP_7 | denotes | COVID-19 |
T85434 | 855-872 | CHEBI:35705;CHEBI:35705 | denotes | immunosuppression |
T96661 | 892-895 | PR:000001004 | denotes | CD4 |
T91572 | 910-917 | CL:0000084 | denotes | T cells |
T27673 | 997-1016 | UBERON:0007221 | denotes | intensive care unit |
T544 | 1157-1163 | NCBITaxon:4751 | denotes | fungal |
T63230 | 1221-1229 | SP_7 | denotes | COVID-19 |
T67064 | 1259-1265 | NCBITaxon:4751 | denotes | fungal |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 773-781 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
T2 | 912-917 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
33 | 93-101 | Species | denotes | patients | Tax:9606 |
48 | 3-16 | Disease | denotes | aspergillosis | MESH:D001228 |
49 | 18-29 | Disease | denotes | candidiasis | MESH:D002177 |
50 | 48-62 | Disease | denotes | cryptococcosis | MESH:D003453 |
51 | 84-92 | Disease | denotes | COVID-19 | MESH:C000657245 |
54 | 129-137 | Disease | denotes | COVID-19 | MESH:C000657245 |
55 | 161-181 | Disease | denotes | Fungal Co-infections | MESH:D060085 |
81 | 892-895 | Gene | denotes | CD4 | Gene:920 |
82 | 904-907 | Gene | denotes | CD8 | Gene:925 |
83 | 189-194 | Species | denotes | human | Tax:9606 |
84 | 198-203 | Species | denotes | human | Tax:9606 |
85 | 272-319 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
86 | 321-331 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
87 | 561-569 | Species | denotes | SARS-CoV | Tax:694009 |
88 | 574-629 | Species | denotes | Middle East Respiratory Syndrome Coronavirus (MERS-CoV) | Tax:1335626 |
89 | 631-641 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
90 | 834-842 | Species | denotes | patients | Tax:9606 |
91 | 938-946 | Species | denotes | patients | Tax:9606 |
92 | 963-971 | Species | denotes | patients | Tax:9606 |
93 | 1230-1238 | Species | denotes | patients | Tax:9606 |
94 | 225-249 | Disease | denotes | coronavirus disease 2019 | MESH:C000657245 |
95 | 251-259 | Disease | denotes | COVID-19 | MESH:C000657245 |
96 | 417-425 | Disease | denotes | COVID-19 | MESH:C000657245 |
97 | 539-545 | Disease | denotes | deaths | MESH:D003643 |
98 | 667-688 | Disease | denotes | respiratory infection | MESH:D012141 |
99 | 703-739 | Disease | denotes | Acute Respiratory Distress Syndromes | MESH:D012128 |
100 | 741-745 | Disease | denotes | ARDS | MESH:D012128 |
101 | 825-833 | Disease | denotes | COVID-19 | MESH:C000657245 |
102 | 923-937 | Disease | denotes | Critically ill | MESH:D016638 |
103 | 1164-1177 | Disease | denotes | co-infections | MESH:D060085 |
104 | 1221-1229 | Disease | denotes | COVID-19 | MESH:C000657245 |
105 | 1266-1276 | Disease | denotes | infections | MESH:D007239 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T18 | 3-16 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T19 | 18-29 | Disease | denotes | candidiasis | http://purl.obolibrary.org/obo/MONDO_0002026 |
T20 | 31-43 | Disease | denotes | mucormycosis | http://purl.obolibrary.org/obo/MONDO_0019136 |
T21 | 48-62 | Disease | denotes | cryptococcosis | http://purl.obolibrary.org/obo/MONDO_0005724 |
T22 | 84-92 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T23 | 129-137 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T24 | 171-181 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
T25 | 225-249 | Disease | denotes | coronavirus disease 2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T26 | 251-259 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T27 | 272-319 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T28 | 272-305 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T29 | 321-329 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T30 | 417-425 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T31 | 561-569 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T32 | 631-639 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T33 | 667-688 | Disease | denotes | respiratory infection | http://purl.obolibrary.org/obo/MONDO_0024355 |
T34 | 679-688 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T35 | 703-739 | Disease | denotes | Acute Respiratory Distress Syndromes | http://purl.obolibrary.org/obo/MONDO_0006502 |
T36 | 709-739 | Disease | denotes | Respiratory Distress Syndromes | http://purl.obolibrary.org/obo/MONDO_0009971 |
T37 | 741-745 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
T38 | 825-833 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T39 | 1167-1177 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
T40 | 1221-1229 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T41 | 1259-1276 | Disease | denotes | fungal infections | http://purl.obolibrary.org/obo/MONDO_0002041 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7 | 189-194 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T8 | 198-203 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T9 | 334-337 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T10 | 426-429 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T11 | 878-879 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T12 | 892-895 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
T13 | 904-907 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
T14 | 910-917 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
T15 | 1067-1068 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T4 | 168-170 | Chemical | denotes | Co | http://purl.obolibrary.org/obo/CHEBI_27638 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10 | 104-181 | Sentence | denotes | The Global Popularity of COVID-19 and the Possibility of Fungal Co-infections |
T11 | 182-391 | Sentence | denotes | As the human-to-human transmitted disease, coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has been an emergency global public health events [1, 2]. |
T12 | 392-555 | Sentence | denotes | Till May 18th, 2020, the COVID-19 has rapidly spread to 212 countries and caused nearly 5 million laboratory-confirmed cases and more than 310,000 deaths globally. |
T13 | 556-751 | Sentence | denotes | Like SARS-CoV and Middle East Respiratory Syndrome Coronavirus (MERS-CoV), SARS-CoV-2 is responsible for lower respiratory infection and can cause Acute Respiratory Distress Syndromes (ARDS) [3]. |
T14 | 752-922 | Sentence | denotes | Besides, the diffuse alveolar damage with severe inflammatory exudation, COVID-19 patients always have immunosuppression with a decrease in CD4 + T and CD8 + T cells [4]. |
T15 | 923-1182 | Sentence | denotes | Critically ill patients, especially the patients who were admitted to the intensive care unit (ICU) and required mechanical ventilation, or had a longer duration of hospital stays, even as long as 50 days, were more likely to develop fungal co-infections [5]. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T1 | 667-688 | Phenotype | denotes | respiratory infection | http://purl.obolibrary.org/obo/HP_0011947 |
T2 | 709-729 | Phenotype | denotes | Respiratory Distress | http://purl.obolibrary.org/obo/HP_0002098 |
T3 | 765-788 | Phenotype | denotes | diffuse alveolar damage | http://purl.obolibrary.org/obo/HP_0033006 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32737747-32015507-73473585 | 385-386 | 32015507 | denotes | 1 |
32737747-32123347-73473586 | 388-389 | 32123347 | denotes | 2 |
32737747-32910461-73473587 | 748-749 | 32910461 | denotes | 3 |
32737747-32731000-73473588 | 919-920 | 32731000 | denotes | 4 |
32737747-32598906-73473589 | 1179-1180 | 32598906 | denotes | 5 |