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PMC:7394275 / 0-1349 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1 44-52 SP_7 denotes COVID-19
T2 122-133 NCBITaxon:11118 denotes Coronavirus
T3 148-156 SP_7 denotes COVID-19
T4 169-181 SP_7 denotes severe acute
T5 182-193 SP_7;UBERON:0001004 denotes respiratory
T6 194-216 SP_7 denotes syndrome coronavirus 2
T7 218-228 SP_7 denotes SARS-CoV-2
T8 260-265 UBERON:0010230 denotes globe
T9 304-308 SP_10 denotes SARS
T10 374-380 NCBITaxon:4751 denotes fungal
T11 418-426 SP_7 denotes COVID-19
T12 497-505 SP_7 denotes COVID-19
T13 640-647 NCBITaxon:5478 denotes Candida
T14 662-670 SP_7 denotes COVID-19
T15 820-826 CHEBI:37671;CHEBI:37671 denotes glucan
T16 828-841 CHEBI:27680;CHEBI:27680 denotes galactomannan
T17 1110-1118 SP_7 denotes COVID-19
T18 1314-1322 SP_7 denotes COVID-19
T10086 44-52 SP_7 denotes COVID-19
T16221 122-133 NCBITaxon:11118 denotes Coronavirus
T65240 148-156 SP_7 denotes COVID-19
T78096 169-181 SP_7 denotes severe acute
T82615 182-193 SP_7;UBERON:0001004 denotes respiratory
T14104 194-216 SP_7 denotes syndrome coronavirus 2
T83515 218-228 SP_7 denotes SARS-CoV-2
T43579 260-265 UBERON:0010230 denotes globe
T36768 304-308 SP_10 denotes SARS
T42098 374-380 NCBITaxon:4751 denotes fungal
T17484 418-426 SP_7 denotes COVID-19
T57767 497-505 SP_7 denotes COVID-19
T60348 640-647 NCBITaxon:5478 denotes Candida
T22798 662-670 SP_7 denotes COVID-19
T99559 820-826 CHEBI:37671;CHEBI:37671 denotes glucan
T14011 828-841 CHEBI:27680;CHEBI:27680 denotes galactomannan
T74587 1110-1118 SP_7 denotes COVID-19
T75612 1314-1322 SP_7 denotes COVID-19

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 0-20 Disease denotes Fungal Co-infections MESH:D060085
3 44-52 Disease denotes COVID-19 MESH:C000657245
28 169-216 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
29 218-228 Species denotes SARS-CoV-2 Tax:2697049
30 506-514 Species denotes patients Tax:9606
31 671-679 Species denotes patients Tax:9606
32 1119-1127 Species denotes patients Tax:9606
33 1323-1331 Species denotes patients Tax:9606
34 624-635 Species denotes Aspergillus Tax:746128
35 640-647 Species denotes Candida Tax:5478
36 810-826 Chemical denotes (1,3)-β-d-glucan MESH:C480180
37 828-841 Chemical denotes galactomannan MESH:C012990
38 122-146 Disease denotes Coronavirus disease 2019 MESH:C000657245
39 148-156 Disease denotes COVID-19 MESH:C000657245
40 304-308 Disease denotes SARS MESH:D045169
41 381-394 Disease denotes co-infections MESH:D060085
42 418-426 Disease denotes COVID-19 MESH:C000657245
43 497-505 Disease denotes COVID-19 MESH:C000657245
44 648-658 Disease denotes infections MESH:D007239
45 662-670 Disease denotes COVID-19 MESH:C000657245
46 963-979 Disease denotes invasive mycosis MESH:D015821
47 1110-1118 Disease denotes COVID-19 MESH:C000657245
48 1233-1246 Disease denotes aspergillosis MESH:D001228
49 1248-1259 Disease denotes candidiasis MESH:D002177
50 1278-1292 Disease denotes cryptococcosis MESH:D003453
51 1314-1322 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 10-20 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T2 44-52 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 122-146 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 148-156 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 169-216 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T6 169-202 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T7 218-226 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 304-308 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 313-322 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T10 384-394 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T11 418-426 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 497-505 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 615-622 Disease denotes mycoses http://purl.obolibrary.org/obo/MONDO_0002041
T14 640-661 Disease denotes Candida infections in http://purl.obolibrary.org/obo/MONDO_0002026
T15 662-670 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 972-979 Disease denotes mycosis http://purl.obolibrary.org/obo/MONDO_0002041
T17 1110-1118 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 1233-1246 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T19 1248-1259 Disease denotes candidiasis http://purl.obolibrary.org/obo/MONDO_0002026
T20 1261-1273 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T21 1278-1292 Disease denotes cryptococcosis http://purl.obolibrary.org/obo/MONDO_0005724
T22 1314-1322 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 63-64 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 231-234 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 276-277 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 567-568 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 712-713 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1140-1141 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 7-9 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T2 820-826 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T3 828-841 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 828-841 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-62 Sentence denotes Fungal Co-infections Associated with Global COVID-19 Pandemic:
T2 63-111 Sentence denotes A Clinical and Diagnostic Perspective from China
T3 113-121 Sentence denotes Abstract
T4 122-266 Sentence denotes Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has been sweeping across the globe.
T5 267-459 Sentence denotes Based on a retrospective analysis of SARS and influenza data from China and worldwide, we surmise that the fungal co-infections associated with global COVID-19 might be missed or misdiagnosed.
T6 460-623 Sentence denotes Although there are few publications, COVID-19 patients, especially severely ill or immunocompromised, have a higher probability of suffering from invasive mycoses.
T7 624-896 Sentence denotes Aspergillus and Candida infections in COVID-19 patients will require early detection by a comprehensive diagnostic intervention (histopathology, direct microscopic examination, culture, (1,3)-β-d-glucan, galactomannan, and PCR-based assays) to ensure effective treatments.
T8 897-1128 Sentence denotes We suggest it is prudent to assess the risk factors, the types of invasive mycosis, the strengths and limitations of diagnostic methods, clinical settings, and the need for standard or individualized treatment in COVID-19 patients.
T9 1129-1332 Sentence denotes We provide a clinical flow diagram to assist the clinicians and laboratory experts in the management of aspergillosis, candidiasis, mucormycosis, or cryptococcosis as co-morbidities in COVID-19 patients.