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PMC:7386875 / 9333-10406 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T51 158-163 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T52 585-592 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T10 158-163 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T98 26-34 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 65-73 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T100 121-131 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T101 164-170 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T102 193-201 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 285-289 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T104 294-312 Disease denotes multiorgan failure http://purl.obolibrary.org/obo/MONDO_0043726
T105 477-485 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 636-654 Disease denotes hypercoagulability http://purl.obolibrary.org/obo/MONDO_0002305
T107 784-793 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T108 983-991 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T74 112-120 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T75 112-120 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T76 158-163 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T77 217-218 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 495-496 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 867-878 http://purl.obolibrary.org/obo/PR_000007299 denotes prothrombin
T80 888-897 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T81 959-960 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T44 585-592 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T12 112-131 Phenotype denotes arterial thrombosis http://purl.obolibrary.org/obo/HP_0004420
T13 636-654 Phenotype denotes hypercoagulability http://purl.obolibrary.org/obo/HP_0100724
T14 814-834 Phenotype denotes abnormal coagulation http://purl.obolibrary.org/obo/HP_0001928
T15 857-883 Phenotype denotes prolonged prothrombin time http://purl.obolibrary.org/obo/HP_0008151
T16 1027-1052 Phenotype denotes coagulation abnormalities http://purl.obolibrary.org/obo/HP_0001928

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T24 360-382 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T25 367-382 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T26 823-834 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation
T27 1027-1038 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T46 0-171 Sentence denotes An emerging threat of the COVID-19 pandemic is the propensity of SARS-CoV-2 to cause microvascular, venous, and arterial thrombosis, and thereby exacerbating organ injury.
T47 172-1073 Sentence denotes Patients with severe COVID-19 appear to have a hyperinflammatory response, which is linked to the development of ARDS and multiorgan failure.6 However, it is now well appreciated that the innate immune response and thrombotic response are closely linked (Figure 2) and accordingly in patients with severe COVID-19 there is a correlation with elevated acute phase reactants, such as fibrinogen and CRP (C-reactive protein), which may contribute to COVID-associated hypercoagulability.7–9 Moreover, these biomarkers and acute phase reactants are associated with adverse clinical outcomes and increased severity of infection.7,9,10 In addition, abnormal coagulation parameters, including prolonged prothrombin time and activated partial thromboplastin time, are found to be associated with a higher mortality from COVID-19, demonstrating the significance of coagulation abnormalities in this population.3

2_test

Id Subject Object Predicate Lexical cue
32586214-32353251-21597671 313-314 32353251 denotes 6
32586214-32344321-21597672 655-656 32344321 denotes 7
32586214-32464112-21597672 655-656 32464112 denotes 7
32586214-32320677-21597672 655-656 32320677 denotes 7
32586214-32344321-21597673 794-795 32344321 denotes 7
32586214-32320677-21597674 796-797 32320677 denotes 9
32586214-32073213-21597675 798-800 32073213 denotes 10
32586214-32284615-21597676 1072-1073 32284615 denotes 3

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
377 554-564 Gene denotes fibrinogen Gene:2244
378 569-572 Gene denotes CRP Gene:1401
379 574-592 Gene denotes C-reactive protein Gene:1401
380 65-75 Species denotes SARS-CoV-2 Tax:2697049
381 172-180 Species denotes Patients Tax:9606
382 456-464 Species denotes patients Tax:9606
383 26-34 Disease denotes COVID-19 MESH:C000657245
384 121-131 Disease denotes thrombosis MESH:D013927
385 158-170 Disease denotes organ injury MESH:D009102
386 193-201 Disease denotes COVID-19 MESH:C000657245
387 285-289 Disease denotes ARDS MESH:D012128
388 294-312 Disease denotes multiorgan failure MESH:D009102
389 387-397 Disease denotes thrombotic MESH:D013927
390 477-485 Disease denotes COVID-19 MESH:C000657245
391 619-624 Disease denotes COVID MESH:C000657245
392 636-654 Disease denotes hypercoagulability MESH:D019851
393 784-793 Disease denotes infection MESH:D007239
394 814-834 Disease denotes abnormal coagulation MESH:D025861
395 968-977 Disease denotes mortality MESH:D003643
396 983-991 Disease denotes COVID-19 MESH:C000657245
397 1027-1052 Disease denotes coagulation abnormalities MESH:D025861