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PMC:7386875 / 47321-50606 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T468 204-211 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T469 230-237 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T470 434-441 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T471 570-578 Body_part denotes heparins http://purl.org/sig/ont/fma/fma82839
T472 754-762 Body_part denotes heparins http://purl.org/sig/ont/fma/fma82839
T473 1013-1022 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T474 1046-1053 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T475 1081-1096 Body_part denotes heparan sulfate http://purl.org/sig/ont/fma/fma63023
T476 1111-1125 Body_part denotes polysaccharide http://purl.org/sig/ont/fma/fma82746
T477 1137-1150 Body_part denotes cell surfaces http://purl.org/sig/ont/fma/fma67653
T478 1137-1141 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T479 1155-1175 Body_part denotes extracellular matrix http://purl.org/sig/ont/fma/fma9672
T480 1192-1204 Body_part denotes disaccharide http://purl.org/sig/ont/fma/fma82744
T481 1246-1253 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T482 1268-1275 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T483 1289-1303 Body_part denotes polysaccharide http://purl.org/sig/ont/fma/fma82746
T484 1326-1341 Body_part denotes heparan sulfate http://purl.org/sig/ont/fma/fma63023
T485 1509-1516 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T486 1569-1584 Body_part denotes heparan sulfate http://purl.org/sig/ont/fma/fma63023
T487 1651-1656 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T488 1735-1740 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T489 1742-1757 Body_part denotes heparan sulfate http://purl.org/sig/ont/fma/fma63023
T490 1856-1861 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T491 1922-1934 Body_part denotes cell surface http://purl.org/sig/ont/fma/fma67653
T492 1922-1926 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T493 2000-2012 Body_part denotes cell surface http://purl.org/sig/ont/fma/fma67653
T494 2000-2004 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T495 2051-2055 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T496 2125-2132 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T497 2165-2172 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T498 2206-2213 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T499 2375-2382 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T500 2458-2465 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T501 2518-2523 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T502 2669-2677 Body_part denotes heparins http://purl.org/sig/ont/fma/fma82839
T503 2820-2827 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T504 3020-3027 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T505 3050-3057 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T506 3206-3213 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T356 155-158 Disease denotes VTE http://purl.obolibrary.org/obo/MONDO_0005399
T357 473-481 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T358 543-555 Disease denotes coagulopathy http://purl.obolibrary.org/obo/MONDO_0001531
T359 851-866 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T360 857-866 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T361 1477-1492 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T362 1483-1492 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T363 1631-1635 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T364 2137-2145 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T365 2221-2229 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T366 2326-2334 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T367 2469-2477 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T368 2590-2598 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T369 2699-2707 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T370 2867-2875 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T371 3050-3082 Disease denotes heparin-induced thrombocytopenia http://purl.obolibrary.org/obo/MONDO_0018048
T372 3066-3082 Disease denotes thrombocytopenia http://purl.obolibrary.org/obo/MONDO_0002049
T373 3115-3131 Disease denotes thrombocytopenia http://purl.obolibrary.org/obo/MONDO_0002049
T374 3136-3146 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T375 3177-3185 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T376 3206-3238 Disease denotes heparin-induced thrombocytopenia http://purl.obolibrary.org/obo/MONDO_0018048
T377 3222-3238 Disease denotes thrombocytopenia http://purl.obolibrary.org/obo/MONDO_0002049

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T507 80-83 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T508 1054-1057 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T509 1058-1059 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T510 1137-1141 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T511 1257-1258 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T512 1342-1345 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T513 1371-1372 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T514 1390-1391 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T515 1402-1409 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T516 1456-1461 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T517 1528-1529 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T518 1586-1589 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T519 1651-1665 http://purl.obolibrary.org/obo/CL_0001034 denotes cells in vitro
T520 1735-1740 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T521 1758-1761 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T522 1856-1861 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T523 1909-1914 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T524 1922-1926 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T525 2000-2004 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T526 2051-2055 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T527 2232-2237 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T528 2337-2342 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T529 2518-2523 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T530 3282-3285 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T281 204-211 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T282 230-237 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T283 434-441 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T284 570-578 Chemical denotes heparins http://purl.obolibrary.org/obo/CHEBI_24505
T285 595-609 Chemical denotes anticoagulants http://purl.obolibrary.org/obo/CHEBI_50249
T286 754-762 Chemical denotes heparins http://purl.obolibrary.org/obo/CHEBI_24505
T287 1046-1053 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T288 1081-1096 Chemical denotes heparan sulfate http://purl.obolibrary.org/obo/CHEBI_28815
T289 1081-1088 Chemical denotes heparan http://purl.obolibrary.org/obo/CHEBI_24500
T290 1089-1096 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T291 1111-1125 Chemical denotes polysaccharide http://purl.obolibrary.org/obo/CHEBI_18154
T292 1192-1204 Chemical denotes disaccharide http://purl.obolibrary.org/obo/CHEBI_36233
T293 1246-1253 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T294 1268-1275 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T295 1289-1303 Chemical denotes polysaccharide http://purl.obolibrary.org/obo/CHEBI_18154
T296 1326-1341 Chemical denotes heparan sulfate http://purl.obolibrary.org/obo/CHEBI_28815
T297 1326-1333 Chemical denotes heparan http://purl.obolibrary.org/obo/CHEBI_24500
T298 1334-1341 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T299 1509-1516 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T300 1569-1584 Chemical denotes heparan sulfate http://purl.obolibrary.org/obo/CHEBI_28815
T301 1569-1576 Chemical denotes heparan http://purl.obolibrary.org/obo/CHEBI_24500
T302 1577-1584 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T303 1742-1757 Chemical denotes heparan sulfate http://purl.obolibrary.org/obo/CHEBI_28815
T304 1742-1749 Chemical denotes heparan http://purl.obolibrary.org/obo/CHEBI_24500
T305 1750-1757 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T306 2125-2132 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T307 2165-2172 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T308 2206-2213 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T309 2263-2272 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T41445 2375-2382 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T78519 2386-2399 Chemical denotes anticoagulant http://purl.obolibrary.org/obo/CHEBI_50249
T91720 2458-2465 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T86020 2669-2677 Chemical denotes heparins http://purl.obolibrary.org/obo/CHEBI_24505
T52927 2820-2827 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T82903 3020-3027 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T22341 3050-3057 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T42905 3206-3213 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T66 340-354 Phenotype denotes thromboembolic http://purl.obolibrary.org/obo/HP_0001907
T67 499-515 Phenotype denotes elevated D-dimer http://purl.obolibrary.org/obo/HP_0033106
T68 528-534 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T69 543-555 Phenotype denotes coagulopathy http://purl.obolibrary.org/obo/HP_0003256
T70 3050-3082 Phenotype denotes heparin-induced thrombocytopenia http://purl.obolibrary.org/obo/HP_0011874
T71 3115-3131 Phenotype denotes thrombocytopenia http://purl.obolibrary.org/obo/HP_0001873
T72 3206-3238 Phenotype denotes heparin-induced thrombocytopenia http://purl.obolibrary.org/obo/HP_0011874

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T151 616-635 http://purl.obolibrary.org/obo/GO_0050819 denotes inhibit coagulation
T152 624-635 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation
T153 851-866 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T154 1477-1492 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T2 1081-1096 GlycoEpitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T3 1326-1341 GlycoEpitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T4 1569-1584 GlycoEpitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T5 1742-1757 GlycoEpitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T164 0-15 Sentence denotes Anticoagulation
T165 16-695 Sentence denotes The strikingly increased prevalence of thrombotic complications has led to many hospitals instituting the routine administration of strict VTE prophylaxis with either low molecular weight heparin or unfractionated heparin and also resulting in several groups using intermediate or full-dose anticoagulation to prevent these thromboembolic phenomena.137,138 Preliminary reports have suggested that low molecular weight heparin treatment reduces mortality in COVID-19 patients with an elevated D-dimer or elevated sepsis-induced coagulopathy score.139 The heparins are widely used anticoagulants which inhibit coagulation by the antithrombin mediated inhibition of FXa or thrombin.
T166 696-1211 Sentence denotes However, aside from their effects on anticoagulation, the heparins appear to have pleiotropic effects that may provide unique advantages in the context of viral infection, including anti-inflammatory effects by way of their ability to bind to danger-associated molecular patterns, such as HMGB-1, and proinflammatory cytokines.140,141 Unfractionated heparin has a similar structure as heparan sulfate, the sulfated polysaccharide present on cell surfaces and extracellular matrix, with repeating disaccharide units.
T167 1212-1311 Sentence denotes In contrast, low molecular weight heparin is a modified heparin with shorter polysaccharide chains.
T168 1312-2287 Sentence denotes Intriguingly, heparan sulfate has previously implicated as a docking site for a number of viruses, thus facilitating cellular attachment of the virus and subsequent viral infection.142,143 Indeed, heparin, acting as a decoy receptor for naturally expressed heparan sulfate, has been shown to inhibit the binding of the SARS coronavirus to cells in vitro.144 While ACE-2 is the major receptor that mediates viral entry into cells, heparan sulfate has previously been demonstrated to play an important role in facilitating coronavirus entry into cells by functioning as an adhesion receptor for the virus on the cell surface thereby allowing the increased density of viral particles on the cell surface which then facilitates ACE-2-mediated cell entry.145 Recent studies have directly investigated the link between heparin and SARS-CoV-2 and suggest that heparin can directly bind with the spike protein of the SARS-CoV-2 virus and, therefore, may have antiviral properties.146
T169 2288-2601 Sentence denotes Another interesting aspect of how the SARS-CoV-2 virus may be influenced by the use of heparin as anticoagulant is the previous observation that FXa can cleave the spike protein of SARS-CoV to render it more efficient in invading cells.147 However, to date, this aspect remains to be investigated with SARS-CoV-2.
T170 2602-2913 Sentence denotes These data have led some groups to propose specifically engineered heparins for the treatment of COVID-19, while clinical trials are underway to investigate the effects of low dose, and full-dose, anticoagulation with heparin on clinical outcomes for patients with COVID-19 (URL: https://www.clinicaltrials.gov.
T171 2914-3285 Sentence denotes Unique identifiers: NCT04344756 and NCT04345848).142 It is important to note that given the potential for heparin therapeutics to cause heparin-induced thrombocytopenia, but reassuringly, despite both thrombocytopenia and thrombosis being common complications of COVID-19, the development of heparin-induced thrombocytopenia appears limited to individual case reports.148

2_test

Id Subject Object Predicate Lexical cue
32586214-32311448-21597810 365-368 32311448 denotes 137
32586214-32339221-21597811 369-372 32339221 denotes 138
32586214-32220112-21597812 562-565 32220112 denotes 139
32586214-32188725-21597813 1023-1026 32188725 denotes 140
32586214-27975101-21597814 1027-1030 27975101 denotes 141
32586214-11746174-21597815 1493-1496 11746174 denotes 142
32586214-11518721-21597816 1497-1500 11518721 denotes 143
32586214-21887302-21597817 1666-1669 21887302 denotes 144
32586214-25187545-21597818 2062-2065 25187545 denotes 145
32586214-19321428-21597819 2524-2527 19321428 denotes 147
32586214-11746174-21597820 2963-2966 11746174 denotes 142

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1605 643-655 Gene denotes antithrombin Gene:462
1606 679-682 Gene denotes FXa Gene:2159
1607 686-694 Gene denotes thrombin Gene:2147
1608 985-991 Gene denotes HMGB-1 Gene:3146
1609 1676-1681 Gene denotes ACE-2 Gene:59272
1610 2036-2041 Gene denotes ACE-2 Gene:59272
1611 2200-2205 Gene denotes spike Gene:43740568
1612 482-490 Species denotes patients Tax:9606
1613 1631-1647 Species denotes SARS coronavirus Tax:694009
1614 1833-1844 Species denotes coronavirus Tax:11118
1615 2137-2147 Species denotes SARS-CoV-2 Tax:2697049
1616 2221-2231 Species denotes SARS-CoV-2 Tax:2697049
1617 183-211 Chemical denotes low molecular weight heparin MESH:D006495
1618 230-237 Chemical denotes heparin MESH:D006493
1619 413-441 Chemical denotes low molecular weight heparin MESH:D006495
1620 570-578 Chemical denotes heparins MESH:D006493
1621 754-762 Chemical denotes heparins MESH:D006493
1622 1046-1053 Chemical denotes heparin MESH:D006493
1623 1081-1096 Chemical denotes heparan sulfate MESH:D006497
1624 1111-1125 Chemical denotes polysaccharide MESH:D011134
1625 1192-1204 Chemical denotes disaccharide MESH:D004187
1626 1225-1253 Chemical denotes low molecular weight heparin MESH:D006495
1627 1268-1275 Chemical denotes heparin MESH:D006493
1628 1289-1303 Chemical denotes polysaccharide MESH:D011134
1629 1326-1341 Chemical denotes heparan sulfate MESH:D006497
1630 1509-1516 Chemical denotes heparin MESH:D006493
1631 1569-1584 Chemical denotes heparan sulfate MESH:D006497
1632 1742-1757 Chemical denotes heparan sulfate MESH:D006497
1633 2125-2132 Chemical denotes heparin MESH:D006493
1634 2165-2172 Chemical denotes heparin MESH:D006493
1635 55-79 Disease denotes thrombotic complications MESH:D013927
1636 155-158 Disease denotes VTE MESH:D054556
1637 340-364 Disease denotes thromboembolic phenomena MESH:D013923
1638 460-469 Disease denotes mortality MESH:D003643
1639 473-481 Disease denotes COVID-19 MESH:C000657245
1640 528-534 Disease denotes sepsis MESH:D018805
1641 543-555 Disease denotes coagulopathy MESH:D001778
1642 851-866 Disease denotes viral infection MESH:D001102
1643 1477-1492 Disease denotes viral infection MESH:D001102
1663 2433-2436 Gene denotes FXa Gene:2159
1664 2452-2457 Gene denotes spike Gene:43740568
1665 2326-2336 Species denotes SARS-CoV-2 Tax:2697049
1666 2469-2477 Species denotes SARS-CoV Tax:694009
1667 2590-2600 Species denotes SARS-CoV-2 Tax:2697049
1668 2853-2861 Species denotes patients Tax:9606
1669 2375-2382 Chemical denotes heparin MESH:D006493
1670 2669-2677 Chemical denotes heparins MESH:D006493
1671 2820-2827 Chemical denotes heparin MESH:D006493
1672 3020-3027 Chemical denotes heparin MESH:D006493
1673 3050-3057 Chemical denotes heparin MESH:D006493
1674 3206-3213 Chemical denotes heparin MESH:D006493
1675 2699-2707 Disease denotes COVID-19 MESH:C000657245
1676 2867-2875 Disease denotes COVID-19 MESH:C000657245
1677 3066-3082 Disease denotes thrombocytopenia MESH:D013921
1678 3115-3131 Disease denotes thrombocytopenia MESH:D013921
1679 3136-3146 Disease denotes thrombosis MESH:D013927
1680 3177-3185 Disease denotes COVID-19 MESH:C000657245
1681 3222-3238 Disease denotes thrombocytopenia MESH:D013921