PMC:7386875 / 36954-38583
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T349 | 0-8 | Body_part | denotes | Platelet | http://purl.org/sig/ont/fma/fma62851 |
| T350 | 9-17 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T351 | 117-125 | Body_part | denotes | platelet | http://purl.org/sig/ont/fma/fma62851 |
| T352 | 130-138 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T353 | 184-193 | Body_part | denotes | platelets | http://purl.org/sig/ont/fma/fma62851 |
| T354 | 201-209 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T355 | 270-275 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T356 | 308-316 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T357 | 384-393 | Body_part | denotes | cytokines | http://purl.org/sig/ont/fma/fma84050 |
| T358 | 423-431 | Body_part | denotes | platelet | http://purl.org/sig/ont/fma/fma62851 |
| T359 | 432-442 | Body_part | denotes | P-selectin | http://purl.org/sig/ont/fma/fma62933 |
| T360 | 451-459 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T361 | 508-516 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T362 | 554-562 | Body_part | denotes | platelet | http://purl.org/sig/ont/fma/fma62851 |
| T363 | 571-581 | Body_part | denotes | chemokines | http://purl.org/sig/ont/fma/fma241981 |
| T364 | 609-617 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T365 | 663-674 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T366 | 699-708 | Body_part | denotes | platelets | http://purl.org/sig/ont/fma/fma62851 |
| T367 | 749-760 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T368 | 998-1011 | Body_part | denotes | phospholipids | http://purl.org/sig/ont/fma/fma82779 |
| T369 | 1091-1096 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T370 | 1147-1160 | Body_part | denotes | phospholipids | http://purl.org/sig/ont/fma/fma82779 |
| T371 | 1299-1307 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T372 | 1323-1331 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T373 | 1348-1364 | Body_part | denotes | endothelial cell | http://purl.org/sig/ont/fma/fma66772 |
| T374 | 1360-1364 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T375 | 1393-1405 | Body_part | denotes | phospholipid | http://purl.org/sig/ont/fma/fma82779 |
| T376 | 1520-1524 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T377 | 1555-1563 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T378 | 1564-1574 | Body_part | denotes | macrophage | http://purl.org/sig/ont/fma/fma63261 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T55 | 1520-1524 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T291 | 789-797 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T292 | 904-912 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T293 | 1048-1063 | Disease | denotes | atherosclerosis | http://purl.obolibrary.org/obo/MONDO_0005311 |
| T294 | 1114-1122 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T295 | 1242-1254 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T296 | 1501-1505 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T297 | 1514-1531 | Disease | denotes | acute lung injury | http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796 |
| T299 | 1525-1531 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T370 | 9-17 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T371 | 38-39 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T372 | 130-138 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T373 | 201-209 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T374 | 214-215 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T375 | 258-267 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activated |
| T376 | 268-275 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
| T377 | 277-286 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
| T378 | 308-316 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T379 | 394-398 | http://purl.obolibrary.org/obo/CLO_0053704 | denotes | IL-8 |
| T380 | 451-459 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T381 | 508-516 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T382 | 609-617 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T383 | 689-698 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activated |
| T384 | 726-736 | http://purl.obolibrary.org/obo/CL_0000234 | denotes | phagocytic |
| T385 | 737-745 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T386 | 765-766 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T387 | 1091-1096 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T388 | 1299-1307 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T389 | 1323-1331 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T390 | 1332-1342 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T391 | 1348-1364 | http://purl.obolibrary.org/obo/CL_0000115 | denotes | endothelial cell |
| T392 | 1365-1375 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T393 | 1415-1418 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T394 | 1445-1446 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T395 | 1483-1484 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T396 | 1520-1524 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T397 | 1520-1524 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T398 | 1535-1536 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T399 | 1555-1563 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
| T400 | 1575-1585 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T401 | 1616-1617 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T177 | 210-212 | Chemical | denotes | NF | http://purl.obolibrary.org/obo/CHEBI_141424|http://purl.obolibrary.org/obo/CHEBI_25573|http://purl.obolibrary.org/obo/CHEBI_1224 |
| T180 | 317-325 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T181 | 394-396 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T183 | 403-406 | Chemical | denotes | MCP | http://purl.obolibrary.org/obo/CHEBI_132592|http://purl.obolibrary.org/obo/CHEBI_50099 |
| T185 | 460-462 | Chemical | denotes | TF | http://purl.obolibrary.org/obo/CHEBI_74862 |
| T186 | 583-585 | Chemical | denotes | PF | http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284 |
| T188 | 989-1011 | Chemical | denotes | oxidized phospholipids | http://purl.obolibrary.org/obo/CHEBI_60156 |
| T189 | 998-1011 | Chemical | denotes | phospholipids | http://purl.obolibrary.org/obo/CHEBI_16247 |
| T190 | 1131-1136 | Chemical | denotes | OxPLs | http://purl.obolibrary.org/obo/CHEBI_60156 |
| T191 | 1138-1160 | Chemical | denotes | oxidised phospholipids | http://purl.obolibrary.org/obo/CHEBI_60156 |
| T192 | 1147-1160 | Chemical | denotes | phospholipids | http://purl.obolibrary.org/obo/CHEBI_16247 |
| T193 | 1179-1202 | Chemical | denotes | reactive oxygen species | http://purl.obolibrary.org/obo/CHEBI_26523 |
| T194 | 1188-1194 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T195 | 1308-1310 | Chemical | denotes | TF | http://purl.obolibrary.org/obo/CHEBI_74862 |
| T196 | 1384-1405 | Chemical | denotes | oxidized phospholipid | http://purl.obolibrary.org/obo/CHEBI_60156 |
| T197 | 1393-1405 | Chemical | denotes | phospholipid | http://purl.obolibrary.org/obo/CHEBI_16247 |
| T198 | 1612-1614 | Chemical | denotes | NF | http://purl.obolibrary.org/obo/CHEBI_141424|http://purl.obolibrary.org/obo/CHEBI_25573|http://purl.obolibrary.org/obo/CHEBI_1224 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T58 | 1048-1063 | Phenotype | denotes | atherosclerosis | http://purl.obolibrary.org/obo/HP_0002621 |
| T59 | 1514-1531 | Phenotype | denotes | acute lung injury | http://www.orpha.net/ORDO/Orphanet_178320 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T110 | 9-28 | http://purl.obolibrary.org/obo/GO_0070487 | denotes | monocyte aggregates |
| T111 | 277-286 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T112 | 351-360 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
| T113 | 1242-1254 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
| T114 | 1323-1342 | http://purl.obolibrary.org/obo/GO_0042117 | denotes | monocyte activation |
| T115 | 1348-1375 | http://purl.obolibrary.org/obo/GO_0042118 | denotes | endothelial cell activation |
| T116 | 1360-1375 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T117 | 1467-1479 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
| T118 | 1564-1585 | http://purl.obolibrary.org/obo/GO_0042116 | denotes | macrophage activation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T124 | 0-1629 | Sentence | denotes | Platelet-monocyte aggregates may play a role in mechanical occlusion of the microvasculature in addition to altering platelet and monocyte functional responses.110,111 In this regard, platelets induce monocyte NF-κB (nuclear factor κ light-chain-enhancer of activated B cells) signaling and thereby modulate monocyte effector functions and induce the synthesis of the proinflammatory cytokines IL-8 and MCP-1.112 Moreover, platelet P-selectin induces monocyte TF expression and upregulates the expression of monocyte Mac-1 (αMβ2, CD11b/CD18).113,114 The platelet-derived chemokines, PF-4 and CXCL-12, enhance monocyte survival and facilitate differentiation into macrophages,115,116 while activated platelets also enhance the phagocytic activity of macrophages.117 A consistent feature of COVID-19 is the finding that patients with existing cardiovascular risk factors are at an increased risk of severe COVID-19 and have higher fatality rates from the disease.34,35 It is noteworthy that oxidized phospholipids, which are strongly associated with atherosclerosis, have been detected in the lungs of patients with SARS-CoV.118,119 OxPLs (oxidised phospholipids) are generated by reactive oxygen species and play important roles in regulating inflammation given their demonstrated roles in promoting monocyte TF production, monocyte activation, and endothelial cell activation.104 The oxidized phospholipid, oxPAPC, has been demonstrated to play a central role in the pathogenesis of a murine model of SARS-induced acute lung injury in a process linked to monocyte/macrophage activation via the TLR-4-TRIF-TRAF-6-NF-κB pathway.119 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32586214-11994242-21597777 | 160-163 | 11994242 | denotes | 110 |
| 32586214-18723438-21597778 | 164-167 | 18723438 | denotes | 111 |
| 32586214-18684880-21597779 | 409-412 | 18684880 | denotes | 112 |
| 32586214-7522321-21597780 | 542-545 | 7522321 | denotes | 113 |
| 32586214-10551687-21597781 | 546-549 | 10551687 | denotes | 114 |
| 32586214-26583329-21597782 | 675-678 | 26583329 | denotes | 115 |
| 32586214-10666185-21597783 | 679-682 | 10666185 | denotes | 116 |
| 32586214-27895175-21597784 | 761-764 | 27895175 | denotes | 117 |
| 32586214-32173574-21597785 | 961-963 | 32173574 | denotes | 34 |
| 32586214-16000355-21597786 | 1123-1126 | 16000355 | denotes | 118 |
| 32586214-18423196-21597787 | 1127-1130 | 18423196 | denotes | 119 |
| 32586214-32376901-21597788 | 1376-1379 | 32376901 | denotes | 104 |
| 32586214-18423196-21597789 | 1626-1629 | 18423196 | denotes | 119 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1235 | 210-215 | Gene | denotes | NF-κB | Gene:4790 |
| 1236 | 394-398 | Gene | denotes | IL-8 | Gene:3576 |
| 1237 | 403-408 | Gene | denotes | MCP-1 | Gene:6347 |
| 1238 | 432-442 | Gene | denotes | P-selectin | Gene:6403 |
| 1239 | 460-462 | Gene | denotes | TF | Gene:2152 |
| 1240 | 517-522 | Gene | denotes | Mac-1 | Gene:3684 |
| 1241 | 530-535 | Gene | denotes | CD11b | Gene:3684 |
| 1242 | 536-540 | Gene | denotes | CD18 | Gene:3689 |
| 1243 | 583-587 | Gene | denotes | PF-4 | Gene:5196 |
| 1244 | 592-599 | Gene | denotes | CXCL-12 | Gene:6387 |
| 1245 | 1308-1310 | Gene | denotes | TF | Gene:2152 |
| 1248 | 818-826 | Species | denotes | patients | Tax:9606 |
| 1249 | 1100-1108 | Species | denotes | patients | Tax:9606 |
| 1250 | 1114-1122 | Species | denotes | SARS-CoV | Tax:694009 |
| 1251 | 1485-1491 | Species | denotes | murine | Tax:10090 |
| 1252 | 998-1011 | Chemical | denotes | phospholipids | MESH:D010743 |
| 1253 | 1147-1160 | Chemical | denotes | phospholipids | MESH:D010743 |
| 1254 | 1179-1202 | Chemical | denotes | reactive oxygen species | MESH:D017382 |
| 1262 | 789-797 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1263 | 904-912 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1264 | 1048-1063 | Disease | denotes | atherosclerosis | MESH:D050197 |
| 1265 | 1242-1254 | Disease | denotes | inflammation | MESH:D007249 |
| 1266 | 1514-1531 | Disease | denotes | acute lung injury | MESH:D055371 |
| 1267 | 1594-1617 | Disease | denotes | TLR-4-TRIF-TRAF-6-NF-κB | MESH:C537392 |