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PMC:7386875 / 17005-17989 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T104 449-457 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T105 458-467 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T106 625-633 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T107 656-664 Body_part denotes platelet http://purl.org/sig/ont/fma/fma62851
T108 726-747 Body_part denotes pulmonary vasculature http://purl.org/sig/ont/fma/fma73750
T109 777-782 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T18 458-467 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T19 736-747 Body_part denotes vasculature http://purl.obolibrary.org/obo/UBERON_0002049

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T167 24-34 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T168 106-110 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T169 160-164 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T170 216-224 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T171 300-308 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T172 311-320 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T173 356-364 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T174 376-395 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T175 514-523 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T176 650-654 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T177 957-965 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T130 35-38 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T131 81-82 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 115-118 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T133 238-240 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T134 241-243 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T135 410-413 http://purl.obolibrary.org/obo/CLO_0001618 denotes a 9
T136 410-413 http://purl.obolibrary.org/obo/CLO_0001619 denotes a 9
T137 410-413 http://purl.obolibrary.org/obo/CLO_0001620 denotes a 9
T138 684-685 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 777-782 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T140 806-808 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T141 924-925 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T35 293-320 Phenotype denotes severe SARS-CoV-2 infection http://purl.obolibrary.org/obo/HP_0033141
T36 376-395 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T37 617-640 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T37 972-983 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T74 0-984 Sentence denotes Pulmonary microvascular thrombosis has been previously described in autopsies as a complication of severe ARDS and has subsequently been reported to complicate ARDS during outbreaks of other coronaviruses, including SARS-CoV and MERS-CoV.36–41 However, this feature appears more pronounced in severe SARS-CoV-2 infection, with histology from patients with COVID-19-associated respiratory failure demonstrating a 9-fold increase in the prevalence of alveolar-capillary microthrombi when compared with patients with influenza.42 In this regard, autopsy findings have shown that, in addition to the expected features of diffuse alveolar damage found in ARDS, platelet-fibrin thrombi are a common microscopic finding in the small pulmonary vasculature, occurring in 80% to 100% of lungs examined at autopsy.43–45 In combination with other reported thrombotic events, the emerging microvascular thrombotic complications indicate a strong interaction between the SARS-CoV-2 and coagulation.

2_test

Id Subject Object Predicate Lexical cue
32586214-14660106-21597696 238-240 14660106 denotes 36
32586214-12845623-21597696 238-240 12845623 denotes 36
32586214-15272286-21597696 238-240 15272286 denotes 36
32586214-14506633-21597696 238-240 14506633 denotes 36
32586214-26486634-21597696 238-240 26486634 denotes 36
32586214-6859225-21597696 238-240 6859225 denotes 36
32586214-32294295-21597697 803-805 32294295 denotes 43

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
669 191-204 Species denotes coronaviruses Tax:11118
670 216-224 Species denotes SARS-CoV Tax:694009
671 229-237 Species denotes MERS-CoV Tax:1335626
672 342-350 Species denotes patients Tax:9606
673 500-508 Species denotes patients Tax:9606
674 957-967 Species denotes SARS-CoV-2 Tax:2697049
676 514-523 Species denotes influenza Tax:11309
679 0-34 Disease denotes Pulmonary microvascular thrombosis MESH:D013927
680 106-110 Disease denotes ARDS MESH:D012128
681 160-164 Disease denotes ARDS MESH:D012128
682 300-320 Disease denotes SARS-CoV-2 infection MESH:C000657245
683 356-364 Disease denotes COVID-19 MESH:C000657245
684 376-395 Disease denotes respiratory failure MESH:D012131
685 625-640 Disease denotes alveolar damage MESH:D055370
686 650-654 Disease denotes ARDS MESH:D012128
687 672-679 Disease denotes thrombi MESH:D013927
688 844-854 Disease denotes thrombotic MESH:D013927
689 890-900 Disease denotes thrombotic MESH:D013927