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PMC:7386875 / 16850-18196 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T104 604-612 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T105 613-622 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T106 780-788 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T107 811-819 Body_part denotes platelet http://purl.org/sig/ont/fma/fma62851
T108 881-902 Body_part denotes pulmonary vasculature http://purl.org/sig/ont/fma/fma73750
T109 932-937 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T110 1220-1224 Body_part denotes body http://purl.org/sig/ont/fma/fma256135

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T18 613-622 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T19 891-902 Body_part denotes vasculature http://purl.obolibrary.org/obo/UBERON_0002049

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T163 0-8 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T164 27-37 Disease denotes Thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T165 115-123 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T166 143-153 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T167 179-189 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T168 261-265 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T169 315-319 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T170 371-379 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T171 455-463 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T172 466-475 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T173 511-519 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T174 531-550 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T175 669-678 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T176 805-809 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T177 1112-1120 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T178 1193-1203 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T179 1249-1257 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T180 1335-1345 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T129 91-92 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 190-193 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T131 236-237 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 270-273 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T133 393-395 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T134 396-398 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T135 565-568 http://purl.obolibrary.org/obo/CLO_0001618 denotes a 9
T136 565-568 http://purl.obolibrary.org/obo/CLO_0001619 denotes a 9
T137 565-568 http://purl.obolibrary.org/obo/CLO_0001620 denotes a 9
T138 839-840 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 932-937 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T140 961-963 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T141 1079-1080 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T142 1263-1264 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T35 448-475 Phenotype denotes severe SARS-CoV-2 infection http://purl.obolibrary.org/obo/HP_0033141
T36 531-550 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T37 772-795 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T37 1127-1138 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T72 0-37 Sentence denotes COVID-19 and Microvascular Thrombosis
T73 38-154 Sentence denotes In addition to macrovascular complications, there is a strong association of COVID-19 with microvascular thrombosis.
T74 155-1139 Sentence denotes Pulmonary microvascular thrombosis has been previously described in autopsies as a complication of severe ARDS and has subsequently been reported to complicate ARDS during outbreaks of other coronaviruses, including SARS-CoV and MERS-CoV.36–41 However, this feature appears more pronounced in severe SARS-CoV-2 infection, with histology from patients with COVID-19-associated respiratory failure demonstrating a 9-fold increase in the prevalence of alveolar-capillary microthrombi when compared with patients with influenza.42 In this regard, autopsy findings have shown that, in addition to the expected features of diffuse alveolar damage found in ARDS, platelet-fibrin thrombi are a common microscopic finding in the small pulmonary vasculature, occurring in 80% to 100% of lungs examined at autopsy.43–45 In combination with other reported thrombotic events, the emerging microvascular thrombotic complications indicate a strong interaction between the SARS-CoV-2 and coagulation.
T75 1140-1346 Sentence denotes Below, we review the underlying known mechanisms for thrombosis and the growing body of work that implicates SARS-CoV-2 as a key player driving many molecular processes underpinning pathological thrombosis.

2_test

Id Subject Object Predicate Lexical cue
32586214-14660106-21597696 393-395 14660106 denotes 36
32586214-12845623-21597696 393-395 12845623 denotes 36
32586214-15272286-21597696 393-395 15272286 denotes 36
32586214-14506633-21597696 393-395 14506633 denotes 36
32586214-26486634-21597696 393-395 26486634 denotes 36
32586214-6859225-21597696 393-395 6859225 denotes 36
32586214-32294295-21597697 958-960 32294295 denotes 43

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
644 0-8 Disease denotes COVID-19 MESH:C000657245
645 27-37 Disease denotes Thrombosis MESH:D013927
669 346-359 Species denotes coronaviruses Tax:11118
670 371-379 Species denotes SARS-CoV Tax:694009
671 384-392 Species denotes MERS-CoV Tax:1335626
672 497-505 Species denotes patients Tax:9606
673 655-663 Species denotes patients Tax:9606
674 1112-1122 Species denotes SARS-CoV-2 Tax:2697049
675 1249-1259 Species denotes SARS-CoV-2 Tax:2697049
676 669-678 Species denotes influenza Tax:11309
677 115-123 Disease denotes COVID-19 MESH:C000657245
678 143-153 Disease denotes thrombosis MESH:D013927
679 155-189 Disease denotes Pulmonary microvascular thrombosis MESH:D013927
680 261-265 Disease denotes ARDS MESH:D012128
681 315-319 Disease denotes ARDS MESH:D012128
682 455-475 Disease denotes SARS-CoV-2 infection MESH:C000657245
683 511-519 Disease denotes COVID-19 MESH:C000657245
684 531-550 Disease denotes respiratory failure MESH:D012131
685 780-795 Disease denotes alveolar damage MESH:D055370
686 805-809 Disease denotes ARDS MESH:D012128
687 827-834 Disease denotes thrombi MESH:D013927
688 999-1009 Disease denotes thrombotic MESH:D013927
689 1045-1055 Disease denotes thrombotic MESH:D013927
690 1193-1203 Disease denotes thrombosis MESH:D013927
691 1335-1345 Disease denotes thrombosis MESH:D013927