PMC:7386875 / 14462-15660
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T102 | 870-874 | Body_part | denotes | vein | http://purl.org/sig/ont/fma/fma50723 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T15 | 865-874 | Body_part | denotes | deep vein | http://purl.obolibrary.org/obo/UBERON_0035552 |
| T16 | 870-874 | Body_part | denotes | vein | http://purl.obolibrary.org/obo/UBERON_0001638 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T126 | 0-8 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T127 | 13-30 | Disease | denotes | Venous Thrombosis | http://purl.obolibrary.org/obo/MONDO_0008559 |
| T128 | 20-30 | Disease | denotes | Thrombosis | http://purl.obolibrary.org/obo/MONDO_0000831 |
| T129 | 78-81 | Disease | denotes | VTE | http://purl.obolibrary.org/obo/MONDO_0005399 |
| T130 | 99-107 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T131 | 171-174 | Disease | denotes | VTE | http://purl.obolibrary.org/obo/MONDO_0005399 |
| T132 | 237-245 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T133 | 251-269 | Disease | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/MONDO_0005279 |
| T134 | 356-359 | Disease | denotes | VTE | http://purl.obolibrary.org/obo/MONDO_0005399 |
| T135 | 392-395 | Disease | denotes | VTE | http://purl.obolibrary.org/obo/MONDO_0005399 |
| T136 | 473-477 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T137 | 493-501 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T138 | 502-506 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T139 | 546-564 | Disease | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/MONDO_0005279 |
| T140 | 797-805 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T141 | 848-851 | Disease | denotes | VTE | http://purl.obolibrary.org/obo/MONDO_0005399 |
| T142 | 875-885 | Disease | denotes | thrombosis | http://purl.obolibrary.org/obo/MONDO_0000831 |
| T143 | 890-908 | Disease | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/MONDO_0005279 |
| T144 | 1044-1062 | Disease | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/MONDO_0005279 |
| T145 | 1165-1173 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T146 | 1178-1195 | Disease | denotes | venous thrombosis | http://purl.obolibrary.org/obo/MONDO_0008559 |
| T147 | 1185-1195 | Disease | denotes | thrombosis | http://purl.obolibrary.org/obo/MONDO_0000831 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T111 | 48-51 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T112 | 512-513 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T113 | 646-647 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T114 | 687-688 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T115 | 870-874 | http://purl.obolibrary.org/obo/UBERON_0001638 | denotes | vein |
| T116 | 870-874 | http://www.ebi.ac.uk/efo/EFO_0000816 | denotes | vein |
| T117 | 913-914 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T118 | 969-971 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T119 | 972-974 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T120 | 1016-1017 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T21 | 13-30 | Phenotype | denotes | Venous Thrombosis | http://purl.obolibrary.org/obo/HP_0004936 |
| T22 | 251-269 | Phenotype | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/HP_0002204 |
| T23 | 546-564 | Phenotype | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/HP_0002204 |
| T24 | 865-885 | Phenotype | denotes | deep vein thrombosis | http://purl.obolibrary.org/obo/HP_0002625 |
| T25 | 890-908 | Phenotype | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/HP_0002204 |
| T26 | 1044-1062 | Phenotype | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/HP_0002204 |
| T27 | 1178-1195 | Phenotype | denotes | venous thrombosis | http://purl.obolibrary.org/obo/HP_0004936 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T65 | 0-30 | Sentence | denotes | COVID-19 and Venous Thrombosis |
| T66 | 31-134 | Sentence | denotes | Current research has highlighted that rates of VTE in patients with COVID-19 appear markedly increased. |
| T67 | 135-1198 | Sentence | denotes | Indeed, the cumulative incidence of VTE is reported to be between 25% and 49% of patients with severe COVID-19 with pulmonary embolism being the most common thrombotic complication.23–25 Importantly, even with the use of VTE thromboprophylaxis, the risk of VTE appears to remain elevated.24,26 Interestingly, when compared with non-COVID ARDS, patients with COVID-19 ARDS have a substantially increased rate of pulmonary embolism diagnosis (2.1% versus 11.7%, respectively, P=0.008) and patients diagnosed with a thrombotic complication have more than a 5-fold increase in all-cause mortality.25,27 Recently, 2 autopsy series have revealed that in patients with COVID-19 who were not clinically suspected to have VTE ante mortem, deep vein thrombosis, or pulmonary embolism was a common finding at autopsy (reported in 7/12 [58%] and 11/11 [100%], respectively).28,29 Furthermore, a small study found massive pulmonary embolism to be the direct cause of death in over 30% of patients, highlighting the important interplay between COVID-19 and venous thrombosis.29 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32586214-32271988-21597688 | 316-318 | 32271988 | denotes | 23 |
| 32586214-32291094-21597688 | 316-318 | 32291094 | denotes | 23 |
| 32586214-32381264-21597688 | 316-318 | 32381264 | denotes | 23 |
| 32586214-32291094-21597689 | 423-425 | 32291094 | denotes | 24 |
| 32586214-32381264-21597690 | 728-730 | 32381264 | denotes | 25 |
| 32586214-32367170-21597691 | 731-733 | 32367170 | denotes | 27 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 536 | 0-8 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 537 | 13-30 | Disease | denotes | Venous Thrombosis | MESH:D020246 |
| 566 | 85-93 | Species | denotes | patients | Tax:9606 |
| 567 | 216-224 | Species | denotes | patients | Tax:9606 |
| 568 | 479-487 | Species | denotes | patients | Tax:9606 |
| 569 | 622-630 | Species | denotes | patients | Tax:9606 |
| 570 | 783-791 | Species | denotes | patients | Tax:9606 |
| 571 | 1110-1118 | Species | denotes | patients | Tax:9606 |
| 572 | 78-81 | Disease | denotes | VTE | MESH:D054556 |
| 573 | 99-107 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 574 | 171-174 | Disease | denotes | VTE | MESH:D054556 |
| 575 | 237-245 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 576 | 251-269 | Disease | denotes | pulmonary embolism | MESH:D011655 |
| 577 | 292-302 | Disease | denotes | thrombotic | MESH:D013927 |
| 578 | 356-378 | Disease | denotes | VTE thromboprophylaxis | MESH:D054556 |
| 579 | 392-395 | Disease | denotes | VTE | MESH:D054556 |
| 580 | 467-477 | Disease | denotes | COVID ARDS | MESH:C000657245 |
| 581 | 493-501 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 582 | 502-506 | Disease | denotes | ARDS | MESH:D012128 |
| 583 | 546-564 | Disease | denotes | pulmonary embolism | MESH:D011655 |
| 584 | 648-658 | Disease | denotes | thrombotic | MESH:D013927 |
| 585 | 718-727 | Disease | denotes | mortality | MESH:D003643 |
| 586 | 797-805 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 587 | 848-851 | Disease | denotes | VTE | MESH:D054556 |
| 588 | 865-885 | Disease | denotes | deep vein thrombosis | MESH:D020246 |
| 589 | 890-908 | Disease | denotes | pulmonary embolism | MESH:D011655 |
| 590 | 1044-1062 | Disease | denotes | pulmonary embolism | MESH:D011655 |
| 591 | 1089-1094 | Disease | denotes | death | MESH:D003643 |
| 592 | 1165-1173 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 593 | 1178-1195 | Disease | denotes | venous thrombosis | MESH:D020246 |