PMC:7386785 / 83468-87012 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7386785","sourcedb":"PMC","sourceid":"7386785","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7386785","text":"Study characteristics\nPatient Sampling Purpose: diagnosis of SARS‐CoV‐2 pneumoniaDesign: cross‐sectional multicentre prospective studyRecruitment: hospitalised pneumonia patientsSample size: n = 53 (20 cases)Inclusion criteria: suspected SARS‐COV‐2 pneumonia patients, defined as having pneumonia after chest CT (with 1 of the 2 following criteria met: fever or respiratory symptoms, normal or decreased WBC counts/decreasedExclusion criteria: not defined\nPatient characteristics and setting Facility cases: confirmed case: a positive SARS‐COV‐2 nucleotides result either by metagenomic sequencing or RT‐PCR assay for nasopharyngeal swab specimensFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests, 2 days in between)Country: ChinaDates: 22 January 2020‐19 February 2020Symptoms and severity: suspected SARS‐COV‐2 pneumonia (NCP): having pneumonia after chest CT with 1 of the 2 following criteria met: fever or respiratory symptoms, normal or decreased WBC counts/decreased lymphocyte counts, and a travel history or contact with patients with fever or respiratory symptoms from Hubei Province or confirmed cases within 2 weeksDemographics: median age cases 37 years, controls 39 years, gender distribution cases (M/F: 50/50), controls (M/F: 48.5/51.5)Exposure history: not specified\nIndex tests Fever\nDry cough\nDiarrhoea\nFatigue\nHeadache\nVomiting\nAbdominal pain\nTarget condition and reference standard(s) TC: COVID‐19 pneumonia\nRS: a positive SARS‐COV‐2 nucleotides result either by metagenomic sequencing or RT‐PCR assay for nasopharyngeal swab specimens, repeated after 2 days if negative on day 0\nFlow and timing Time interval not specified. Reference standard at day 0 and day 2, index tests from electronic medical records but stated at pneumonia onset\nComparative  \nNotes  \nMethodological quality\nItem Authors' judgement Risk of bias Applicability concerns\nDOMAIN 1: Patient Selection\nWas a consecutive or random sample of patients enrolled? Unclear    \nWas a case‐control design avoided? Yes    \nDid the study avoid inappropriate exclusions? Unclear    \nDid the study avoid inappropriate inclusions? No    \nCould the selection of patients have introduced bias?   High risk  \nAre there concerns that the included patients and setting do not match the review question?     High\nDOMAIN 2: Index Test (All tests)\nWere the index test results interpreted without knowledge of the results of the reference standard? Unclear    \nIf a threshold was used, was it pre‐specified? No    \nCould the conduct or interpretation of the index test have introduced bias?   High risk  \nAre there concerns that the index test, its conduct, or interpretation differ from the review question?     Low concern\nDOMAIN 3: Reference Standard\nIs the reference standards likely to correctly classify the target condition? Yes    \nWere the reference standard results interpreted without knowledge of the results of the index tests? Unclear    \nCould the reference standard, its conduct, or its interpretation have introduced bias?   Low risk  \nAre there concerns that the target condition as defined by the reference standard does not match the question?     Low concern\nDOMAIN 4: Flow and Timing\nWas there an appropriate interval between index test and reference standard? Unclear    \nDid all patients receive the same reference standard? Yes    \nWere all patients included in the analysis? Yes    \nCould the patient flow have introduced bias?   Low risk  ","divisions":[{"label":"tr","span":{"begin":0,"end":23}},{"label":"td","span":{"begin":0,"end":23}},{"label":"tr","span":{"begin":22,"end":456}},{"label":"td","span":{"begin":22,"end":38}},{"label":"td","span":{"begin":40,"end":456}},{"label":"tr","span":{"begin":457,"end":1328}},{"label":"td","span":{"begin":457,"end":492}},{"label":"td","span":{"begin":494,"end":1328}},{"label":"tr","span":{"begin":1329,"end":1408}},{"label":"td","span":{"begin":1329,"end":1340}},{"label":"td","span":{"begin":1342,"end":1408}},{"label":"p","span":{"begin":1342,"end":1347}},{"label":"p","span":{"begin":1348,"end":1357}},{"label":"p","span":{"begin":1358,"end":1367}},{"label":"p","span":{"begin":1368,"end":1375}},{"label":"p","span":{"begin":1376,"end":1384}},{"label":"p","span":{"begin":1385,"end":1393}},{"label":"p","span":{"begin":1394,"end":1408}},{"label":"tr","span":{"begin":1409,"end":1647}},{"label":"td","span":{"begin":1409,"end":1451}},{"label":"td","span":{"begin":1453,"end":1647}},{"label":"p","span":{"begin":1453,"end":1475}},{"label":"p","span":{"begin":1476,"end":1647}},{"label":"tr","span":{"begin":1648,"end":1806}},{"label":"td","span":{"begin":1648,"end":1663}},{"label":"td","span":{"begin":1665,"end":1806}},{"label":"tr","span":{"begin":1807,"end":1821}},{"label":"td","span":{"begin":1807,"end":1818}},{"label":"td","span":{"begin":1820,"end":1821}},{"label":"tr","span":{"begin":1822,"end":1830}},{"label":"td","span":{"begin":1822,"end":1827}},{"label":"td","span":{"begin":1829,"end":1830}},{"label":"tr","span":{"begin":1831,"end":1855}},{"label":"td","span":{"begin":1831,"end":1855}},{"label":"tr","span":{"begin":1854,"end":1919}},{"label":"td","span":{"begin":1854,"end":1859}},{"label":"td","span":{"begin":1860,"end":1879}},{"label":"td","span":{"begin":1881,"end":1894}},{"label":"td","span":{"begin":1896,"end":1919}},{"label":"tr","span":{"begin":1920,"end":1948}},{"label":"td","span":{"begin":1920,"end":1948}},{"label":"tr","span":{"begin":1948,"end":2019}},{"label":"td","span":{"begin":1948,"end":2004}},{"label":"td","span":{"begin":2006,"end":2013}},{"label":"td","span":{"begin":2015,"end":2016}},{"label":"td","span":{"begin":2018,"end":2019}},{"label":"tr","span":{"begin":2020,"end":2065}},{"label":"td","span":{"begin":2020,"end":2054}},{"label":"td","span":{"begin":2056,"end":2059}},{"label":"td","span":{"begin":2061,"end":2062}},{"label":"td","span":{"begin":2064,"end":2065}},{"label":"tr","span":{"begin":2066,"end":2126}},{"label":"td","span":{"begin":2066,"end":2111}},{"label":"td","span":{"begin":2113,"end":2120}},{"label":"td","span":{"begin":2122,"end":2123}},{"label":"td","span":{"begin":2125,"end":2126}},{"label":"tr","span":{"begin":2127,"end":2182}},{"label":"td","span":{"begin":2127,"end":2172}},{"label":"td","span":{"begin":2174,"end":2176}},{"label":"td","span":{"begin":2178,"end":2179}},{"label":"td","span":{"begin":2181,"end":2182}},{"label":"tr","span":{"begin":2183,"end":2253}},{"label":"td","span":{"begin":2183,"end":2237}},{"label":"td","span":{"begin":2238,"end":2239}},{"label":"td","span":{"begin":2241,"end":2250}},{"label":"td","span":{"begin":2252,"end":2253}},{"label":"tr","span":{"begin":2254,"end":2357}},{"label":"td","span":{"begin":2254,"end":2346}},{"label":"td","span":{"begin":2347,"end":2348}},{"label":"td","span":{"begin":2350,"end":2351}},{"label":"td","span":{"begin":2353,"end":2357}},{"label":"tr","span":{"begin":2358,"end":2391}},{"label":"td","span":{"begin":2358,"end":2391}},{"label":"tr","span":{"begin":2391,"end":2505}},{"label":"td","span":{"begin":2391,"end":2490}},{"label":"td","span":{"begin":2492,"end":2499}},{"label":"td","span":{"begin":2501,"end":2502}},{"label":"td","span":{"begin":2504,"end":2505}},{"label":"tr","span":{"begin":2506,"end":2562}},{"label":"td","span":{"begin":2506,"end":2552}},{"label":"td","span":{"begin":2554,"end":2556}},{"label":"td","span":{"begin":2558,"end":2559}},{"label":"td","span":{"begin":2561,"end":2562}},{"label":"tr","span":{"begin":2563,"end":2655}},{"label":"td","span":{"begin":2563,"end":2639}},{"label":"td","span":{"begin":2640,"end":2641}},{"label":"td","span":{"begin":2643,"end":2652}},{"label":"td","span":{"begin":2654,"end":2655}},{"label":"tr","span":{"begin":2656,"end":2778}},{"label":"td","span":{"begin":2656,"end":2760}},{"label":"td","span":{"begin":2761,"end":2762}},{"label":"td","span":{"begin":2764,"end":2765}},{"label":"td","span":{"begin":2767,"end":2778}},{"label":"tr","span":{"begin":2779,"end":2808}},{"label":"td","span":{"begin":2779,"end":2808}},{"label":"tr","span":{"begin":2808,"end":2896}},{"label":"td","span":{"begin":2808,"end":2885}},{"label":"td","span":{"begin":2887,"end":2890}},{"label":"td","span":{"begin":2892,"end":2893}},{"label":"td","span":{"begin":2895,"end":2896}},{"label":"tr","span":{"begin":2897,"end":3012}},{"label":"td","span":{"begin":2897,"end":2997}},{"label":"td","span":{"begin":2999,"end":3006}},{"label":"td","span":{"begin":3008,"end":3009}},{"label":"td","span":{"begin":3011,"end":3012}},{"label":"tr","span":{"begin":3013,"end":3115}},{"label":"td","span":{"begin":3013,"end":3100}},{"label":"td","span":{"begin":3101,"end":3102}},{"label":"td","span":{"begin":3104,"end":3112}},{"label":"td","span":{"begin":3114,"end":3115}},{"label":"tr","span":{"begin":3116,"end":3245}},{"label":"td","span":{"begin":3116,"end":3227}},{"label":"td","span":{"begin":3228,"end":3229}},{"label":"td","span":{"begin":3231,"end":3232}},{"label":"td","span":{"begin":3234,"end":3245}},{"label":"tr","span":{"begin":3246,"end":3272}},{"label":"td","span":{"begin":3246,"end":3272}},{"label":"tr","span":{"begin":3272,"end":3363}},{"label":"td","span":{"begin":3272,"end":3348}},{"label":"td","span":{"begin":3350,"end":3357}},{"label":"td","span":{"begin":3359,"end":3360}},{"label":"td","span":{"begin":3362,"end":3363}},{"label":"tr","span":{"begin":3364,"end":3428}},{"label":"td","span":{"begin":3364,"end":3417}},{"label":"td","span":{"begin":3419,"end":3422}},{"label":"td","span":{"begin":3424,"end":3425}},{"label":"td","span":{"begin":3427,"end":3428}},{"label":"tr","span":{"begin":3429,"end":3483}},{"label":"td","span":{"begin":3429,"end":3472}},{"label":"td","span":{"begin":3474,"end":3477}},{"label":"td","span":{"begin":3479,"end":3480}},{"label":"td","span":{"begin":3482,"end":3483}},{"label":"td","span":{"begin":3484,"end":3529}},{"label":"td","span":{"begin":3530,"end":3531}},{"label":"td","span":{"begin":3533,"end":3541}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T84","span":{"begin":304,"end":309},"obj":"Body_part"},{"id":"T85","span":{"begin":548,"end":559},"obj":"Body_part"},{"id":"T86","span":{"begin":898,"end":903},"obj":"Body_part"},{"id":"T87","span":{"begin":1019,"end":1029},"obj":"Body_part"},{"id":"T88","span":{"begin":1502,"end":1513},"obj":"Body_part"}],"attributes":[{"id":"A84","pred":"fma_id","subj":"T84","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A85","pred":"fma_id","subj":"T85","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A86","pred":"fma_id","subj":"T86","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A87","pred":"fma_id","subj":"T87","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A88","pred":"fma_id","subj":"T88","obj":"http://purl.org/sig/ont/fma/fma82740"},{"subj":"T84","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T85","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T86","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T87","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T88","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T60","span":{"begin":304,"end":309},"obj":"Body_part"},{"id":"T61","span":{"begin":898,"end":903},"obj":"Body_part"}],"attributes":[{"id":"A60","pred":"uberon_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A61","pred":"uberon_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"subj":"T60","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T61","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T354","span":{"begin":62,"end":66},"obj":"Disease"},{"id":"T355","span":{"begin":161,"end":170},"obj":"Disease"},{"id":"T356","span":{"begin":239,"end":243},"obj":"Disease"},{"id":"T357","span":{"begin":250,"end":259},"obj":"Disease"},{"id":"T358","span":{"begin":288,"end":297},"obj":"Disease"},{"id":"T359","span":{"begin":537,"end":541},"obj":"Disease"},{"id":"T360","span":{"begin":668,"end":677},"obj":"Disease"},{"id":"T361","span":{"begin":719,"end":723},"obj":"Disease"},{"id":"T362","span":{"begin":847,"end":851},"obj":"Disease"},{"id":"T363","span":{"begin":858,"end":867},"obj":"Disease"},{"id":"T364","span":{"begin":882,"end":891},"obj":"Disease"},{"id":"T365","span":{"begin":1358,"end":1367},"obj":"Disease"},{"id":"T366","span":{"begin":1457,"end":1465},"obj":"Disease"},{"id":"T367","span":{"begin":1466,"end":1475},"obj":"Disease"},{"id":"T368","span":{"begin":1476,"end":1478},"obj":"Disease"},{"id":"T369","span":{"begin":1491,"end":1495},"obj":"Disease"},{"id":"T370","span":{"begin":1791,"end":1800},"obj":"Disease"}],"attributes":[{"id":"A354","pred":"mondo_id","subj":"T354","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A355","pred":"mondo_id","subj":"T355","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A356","pred":"mondo_id","subj":"T356","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A357","pred":"mondo_id","subj":"T357","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A358","pred":"mondo_id","subj":"T358","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A359","pred":"mondo_id","subj":"T359","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A360","pred":"mondo_id","subj":"T360","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A361","pred":"mondo_id","subj":"T361","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A362","pred":"mondo_id","subj":"T362","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A363","pred":"mondo_id","subj":"T363","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A364","pred":"mondo_id","subj":"T364","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A365","pred":"mondo_id","subj":"T365","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A366","pred":"mondo_id","subj":"T366","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A367","pred":"mondo_id","subj":"T367","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A368","pred":"mondo_id","subj":"T368","obj":"http://purl.obolibrary.org/obo/MONDO_0010725"},{"id":"A369","pred":"mondo_id","subj":"T369","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A370","pred":"mondo_id","subj":"T370","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"subj":"T354","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T355","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T356","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T357","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T358","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T359","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T360","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T361","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T362","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T363","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T364","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T365","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T366","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T367","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T368","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T369","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T370","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T552","span":{"begin":304,"end":309},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T553","span":{"begin":526,"end":527},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T554","span":{"begin":736,"end":741},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T555","span":{"begin":782,"end":784},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T556","span":{"begin":898,"end":903},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T557","span":{"begin":1042,"end":1043},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T558","span":{"begin":1335,"end":1340},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T559","span":{"begin":1476,"end":1478},"obj":"http://purl.obolibrary.org/obo/CLO_0008882"},{"id":"T560","span":{"begin":1480,"end":1481},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T561","span":{"begin":1739,"end":1744},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T562","span":{"begin":1952,"end":1953},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T563","span":{"begin":2024,"end":2025},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T564","span":{"begin":2374,"end":2378},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T565","span":{"begin":2384,"end":2389},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T566","span":{"begin":2406,"end":2410},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T567","span":{"begin":2509,"end":2510},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T568","span":{"begin":2612,"end":2616},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T569","span":{"begin":2690,"end":2694},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T570","span":{"begin":2991,"end":2996},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T571","span":{"begin":3320,"end":3324},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"}],"attributes":[{"subj":"T552","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T553","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T554","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T555","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T556","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T557","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T558","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T559","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T560","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T561","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T562","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T563","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T564","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T565","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T566","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T567","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T568","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T569","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T570","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T571","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T32","span":{"begin":548,"end":559},"obj":"Chemical"},{"id":"T33","span":{"begin":1476,"end":1478},"obj":"Chemical"},{"id":"T34","span":{"begin":1502,"end":1513},"obj":"Chemical"}],"attributes":[{"id":"A32","pred":"chebi_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A33","pred":"chebi_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/CHEBI_73819"},{"id":"A34","pred":"chebi_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T267","span":{"begin":161,"end":170},"obj":"Phenotype"},{"id":"T268","span":{"begin":250,"end":259},"obj":"Phenotype"},{"id":"T269","span":{"begin":288,"end":297},"obj":"Phenotype"},{"id":"T270","span":{"begin":354,"end":359},"obj":"Phenotype"},{"id":"T271","span":{"begin":668,"end":677},"obj":"Phenotype"},{"id":"T272","span":{"begin":858,"end":867},"obj":"Phenotype"},{"id":"T273","span":{"begin":882,"end":891},"obj":"Phenotype"},{"id":"T274","span":{"begin":947,"end":952},"obj":"Phenotype"},{"id":"T275","span":{"begin":1089,"end":1094},"obj":"Phenotype"},{"id":"T276","span":{"begin":1342,"end":1347},"obj":"Phenotype"},{"id":"T277","span":{"begin":1348,"end":1357},"obj":"Phenotype"},{"id":"T278","span":{"begin":1358,"end":1367},"obj":"Phenotype"},{"id":"T279","span":{"begin":1368,"end":1375},"obj":"Phenotype"},{"id":"T280","span":{"begin":1376,"end":1384},"obj":"Phenotype"},{"id":"T281","span":{"begin":1385,"end":1393},"obj":"Phenotype"},{"id":"T282","span":{"begin":1394,"end":1408},"obj":"Phenotype"},{"id":"T283","span":{"begin":1466,"end":1475},"obj":"Phenotype"},{"id":"T284","span":{"begin":1791,"end":1800},"obj":"Phenotype"}],"attributes":[{"id":"A267","pred":"hp_id","subj":"T267","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A268","pred":"hp_id","subj":"T268","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A269","pred":"hp_id","subj":"T269","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A270","pred":"hp_id","subj":"T270","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A271","pred":"hp_id","subj":"T271","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A272","pred":"hp_id","subj":"T272","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A273","pred":"hp_id","subj":"T273","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A274","pred":"hp_id","subj":"T274","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A275","pred":"hp_id","subj":"T275","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A276","pred":"hp_id","subj":"T276","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A277","pred":"hp_id","subj":"T277","obj":"http://purl.obolibrary.org/obo/HP_0031246"},{"id":"A278","pred":"hp_id","subj":"T278","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"id":"A279","pred":"hp_id","subj":"T279","obj":"http://purl.obolibrary.org/obo/HP_0012378"},{"id":"A280","pred":"hp_id","subj":"T280","obj":"http://purl.obolibrary.org/obo/HP_0002315"},{"id":"A281","pred":"hp_id","subj":"T281","obj":"http://purl.obolibrary.org/obo/HP_0002013"},{"id":"A282","pred":"hp_id","subj":"T282","obj":"http://purl.obolibrary.org/obo/HP_0002027"},{"id":"A283","pred":"hp_id","subj":"T283","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A284","pred":"hp_id","subj":"T284","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"subj":"T267","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T268","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T269","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T270","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T271","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T272","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T273","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T274","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T275","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T276","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T277","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T278","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T279","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T280","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T281","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T282","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T283","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T284","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T833","span":{"begin":0,"end":21},"obj":"Sentence"},{"id":"T834","span":{"begin":22,"end":456},"obj":"Sentence"},{"id":"T835","span":{"begin":457,"end":769},"obj":"Sentence"},{"id":"T836","span":{"begin":770,"end":781},"obj":"Sentence"},{"id":"T837","span":{"begin":782,"end":1263},"obj":"Sentence"},{"id":"T838","span":{"begin":1264,"end":1286},"obj":"Sentence"},{"id":"T839","span":{"begin":1287,"end":1328},"obj":"Sentence"},{"id":"T840","span":{"begin":1329,"end":1347},"obj":"Sentence"},{"id":"T841","span":{"begin":1348,"end":1357},"obj":"Sentence"},{"id":"T842","span":{"begin":1358,"end":1367},"obj":"Sentence"},{"id":"T843","span":{"begin":1368,"end":1375},"obj":"Sentence"},{"id":"T844","span":{"begin":1376,"end":1384},"obj":"Sentence"},{"id":"T845","span":{"begin":1385,"end":1393},"obj":"Sentence"},{"id":"T846","span":{"begin":1394,"end":1408},"obj":"Sentence"},{"id":"T847","span":{"begin":1409,"end":1475},"obj":"Sentence"},{"id":"T848","span":{"begin":1476,"end":1647},"obj":"Sentence"},{"id":"T849","span":{"begin":1648,"end":1693},"obj":"Sentence"},{"id":"T850","span":{"begin":1694,"end":1806},"obj":"Sentence"},{"id":"T851","span":{"begin":1807,"end":1821},"obj":"Sentence"},{"id":"T852","span":{"begin":1822,"end":1830},"obj":"Sentence"},{"id":"T853","span":{"begin":1831,"end":1853},"obj":"Sentence"},{"id":"T854","span":{"begin":1854,"end":1919},"obj":"Sentence"},{"id":"T855","span":{"begin":1920,"end":1929},"obj":"Sentence"},{"id":"T856","span":{"begin":1930,"end":1947},"obj":"Sentence"},{"id":"T857","span":{"begin":1948,"end":2004},"obj":"Sentence"},{"id":"T858","span":{"begin":2006,"end":2019},"obj":"Sentence"},{"id":"T859","span":{"begin":2020,"end":2054},"obj":"Sentence"},{"id":"T860","span":{"begin":2056,"end":2065},"obj":"Sentence"},{"id":"T861","span":{"begin":2066,"end":2111},"obj":"Sentence"},{"id":"T862","span":{"begin":2113,"end":2126},"obj":"Sentence"},{"id":"T863","span":{"begin":2127,"end":2172},"obj":"Sentence"},{"id":"T864","span":{"begin":2174,"end":2182},"obj":"Sentence"},{"id":"T865","span":{"begin":2183,"end":2253},"obj":"Sentence"},{"id":"T866","span":{"begin":2254,"end":2357},"obj":"Sentence"},{"id":"T867","span":{"begin":2358,"end":2367},"obj":"Sentence"},{"id":"T868","span":{"begin":2368,"end":2390},"obj":"Sentence"},{"id":"T869","span":{"begin":2391,"end":2490},"obj":"Sentence"},{"id":"T870","span":{"begin":2492,"end":2505},"obj":"Sentence"},{"id":"T871","span":{"begin":2506,"end":2552},"obj":"Sentence"},{"id":"T872","span":{"begin":2554,"end":2562},"obj":"Sentence"},{"id":"T873","span":{"begin":2563,"end":2655},"obj":"Sentence"},{"id":"T874","span":{"begin":2656,"end":2778},"obj":"Sentence"},{"id":"T875","span":{"begin":2779,"end":2788},"obj":"Sentence"},{"id":"T876","span":{"begin":2789,"end":2807},"obj":"Sentence"},{"id":"T877","span":{"begin":2808,"end":2885},"obj":"Sentence"},{"id":"T878","span":{"begin":2887,"end":2896},"obj":"Sentence"},{"id":"T879","span":{"begin":2897,"end":2997},"obj":"Sentence"},{"id":"T880","span":{"begin":2999,"end":3012},"obj":"Sentence"},{"id":"T881","span":{"begin":3013,"end":3115},"obj":"Sentence"},{"id":"T882","span":{"begin":3116,"end":3245},"obj":"Sentence"},{"id":"T883","span":{"begin":3246,"end":3255},"obj":"Sentence"},{"id":"T884","span":{"begin":3256,"end":3271},"obj":"Sentence"},{"id":"T885","span":{"begin":3272,"end":3348},"obj":"Sentence"},{"id":"T886","span":{"begin":3350,"end":3363},"obj":"Sentence"},{"id":"T887","span":{"begin":3364,"end":3417},"obj":"Sentence"},{"id":"T888","span":{"begin":3419,"end":3428},"obj":"Sentence"},{"id":"T889","span":{"begin":3429,"end":3472},"obj":"Sentence"},{"id":"T890","span":{"begin":3474,"end":3483},"obj":"Sentence"},{"id":"T891","span":{"begin":3484,"end":3544},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T833","pred":"source","obj":"LitCovid-sentences"},{"subj":"T834","pred":"source","obj":"LitCovid-sentences"},{"subj":"T835","pred":"source","obj":"LitCovid-sentences"},{"subj":"T836","pred":"source","obj":"LitCovid-sentences"},{"subj":"T837","pred":"source","obj":"LitCovid-sentences"},{"subj":"T838","pred":"source","obj":"LitCovid-sentences"},{"subj":"T839","pred":"source","obj":"LitCovid-sentences"},{"subj":"T840","pred":"source","obj":"LitCovid-sentences"},{"subj":"T841","pred":"source","obj":"LitCovid-sentences"},{"subj":"T842","pred":"source","obj":"LitCovid-sentences"},{"subj":"T843","pred":"source","obj":"LitCovid-sentences"},{"subj":"T844","pred":"source","obj":"LitCovid-sentences"},{"subj":"T845","pred":"source","obj":"LitCovid-sentences"},{"subj":"T846","pred":"source","obj":"LitCovid-sentences"},{"subj":"T847","pred":"source","obj":"LitCovid-sentences"},{"subj":"T848","pred":"source","obj":"LitCovid-sentences"},{"subj":"T849","pred":"source","obj":"LitCovid-sentences"},{"subj":"T850","pred":"source","obj":"LitCovid-sentences"},{"subj":"T851","pred":"source","obj":"LitCovid-sentences"},{"subj":"T852","pred":"source","obj":"LitCovid-sentences"},{"subj":"T853","pred":"source","obj":"LitCovid-sentences"},{"subj":"T854","pred":"source","obj":"LitCovid-sentences"},{"subj":"T855","pred":"source","obj":"LitCovid-sentences"},{"subj":"T856","pred":"source","obj":"LitCovid-sentences"},{"subj":"T857","pred":"source","obj":"LitCovid-sentences"},{"subj":"T858","pred":"source","obj":"LitCovid-sentences"},{"subj":"T859","pred":"source","obj":"LitCovid-sentences"},{"subj":"T860","pred":"source","obj":"LitCovid-sentences"},{"subj":"T861","pred":"source","obj":"LitCovid-sentences"},{"subj":"T862","pred":"source","obj":"LitCovid-sentences"},{"subj":"T863","pred":"source","obj":"LitCovid-sentences"},{"subj":"T864","pred":"source","obj":"LitCovid-sentences"},{"subj":"T865","pred":"source","obj":"LitCovid-sentences"},{"subj":"T866","pred":"source","obj":"LitCovid-sentences"},{"subj":"T867","pred":"source","obj":"LitCovid-sentences"},{"subj":"T868","pred":"source","obj":"LitCovid-sentences"},{"subj":"T869","pred":"source","obj":"LitCovid-sentences"},{"subj":"T870","pred":"source","obj":"LitCovid-sentences"},{"subj":"T871","pred":"source","obj":"LitCovid-sentences"},{"subj":"T872","pred":"source","obj":"LitCovid-sentences"},{"subj":"T873","pred":"source","obj":"LitCovid-sentences"},{"subj":"T874","pred":"source","obj":"LitCovid-sentences"},{"subj":"T875","pred":"source","obj":"LitCovid-sentences"},{"subj":"T876","pred":"source","obj":"LitCovid-sentences"},{"subj":"T877","pred":"source","obj":"LitCovid-sentences"},{"subj":"T878","pred":"source","obj":"LitCovid-sentences"},{"subj":"T879","pred":"source","obj":"LitCovid-sentences"},{"subj":"T880","pred":"source","obj":"LitCovid-sentences"},{"subj":"T881","pred":"source","obj":"LitCovid-sentences"},{"subj":"T882","pred":"source","obj":"LitCovid-sentences"},{"subj":"T883","pred":"source","obj":"LitCovid-sentences"},{"subj":"T884","pred":"source","obj":"LitCovid-sentences"},{"subj":"T885","pred":"source","obj":"LitCovid-sentences"},{"subj":"T886","pred":"source","obj":"LitCovid-sentences"},{"subj":"T887","pred":"source","obj":"LitCovid-sentences"},{"subj":"T888","pred":"source","obj":"LitCovid-sentences"},{"subj":"T889","pred":"source","obj":"LitCovid-sentences"},{"subj":"T890","pred":"source","obj":"LitCovid-sentences"},{"subj":"T891","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"1554","span":{"begin":22,"end":29},"obj":"Species"},{"id":"1555","span":{"begin":62,"end":72},"obj":"Species"},{"id":"1556","span":{"begin":239,"end":249},"obj":"Species"},{"id":"1557","span":{"begin":260,"end":268},"obj":"Species"},{"id":"1558","span":{"begin":457,"end":464},"obj":"Species"},{"id":"1559","span":{"begin":537,"end":547},"obj":"Species"},{"id":"1560","span":{"begin":678,"end":686},"obj":"Species"},{"id":"1561","span":{"begin":719,"end":728},"obj":"Species"},{"id":"1562","span":{"begin":847,"end":857},"obj":"Species"},{"id":"1563","span":{"begin":1075,"end":1083},"obj":"Species"},{"id":"1564","span":{"begin":1315,"end":1328},"obj":"Species"},{"id":"1565","span":{"begin":1491,"end":1501},"obj":"Species"},{"id":"1566","span":{"begin":1679,"end":1692},"obj":"Species"},{"id":"1567","span":{"begin":1930,"end":1937},"obj":"Species"},{"id":"1568","span":{"begin":1986,"end":1994},"obj":"Species"},{"id":"1569","span":{"begin":2206,"end":2214},"obj":"Species"},{"id":"1570","span":{"begin":2291,"end":2299},"obj":"Species"},{"id":"1571","span":{"begin":3372,"end":3380},"obj":"Species"},{"id":"1572","span":{"begin":3438,"end":3446},"obj":"Species"},{"id":"1573","span":{"begin":3494,"end":3501},"obj":"Species"}],"attributes":[{"id":"A1554","pred":"tao:has_database_id","subj":"1554","obj":"Tax:9606"},{"id":"A1555","pred":"tao:has_database_id","subj":"1555","obj":"Tax:2697049"},{"id":"A1556","pred":"tao:has_database_id","subj":"1556","obj":"Tax:2697049"},{"id":"A1557","pred":"tao:has_database_id","subj":"1557","obj":"Tax:9606"},{"id":"A1558","pred":"tao:has_database_id","subj":"1558","obj":"Tax:9606"},{"id":"A1559","pred":"tao:has_database_id","subj":"1559","obj":"Tax:2697049"},{"id":"A1560","pred":"tao:has_database_id","subj":"1560","obj":"Tax:9606"},{"id":"A1561","pred":"tao:has_database_id","subj":"1561","obj":"Tax:2697049"},{"id":"A1562","pred":"tao:has_database_id","subj":"1562","obj":"Tax:2697049"},{"id":"A1563","pred":"tao:has_database_id","subj":"1563","obj":"Tax:9606"},{"id":"A1564","pred":"tao:has_database_id","subj":"1564","obj":"Tax:32644"},{"id":"A1565","pred":"tao:has_database_id","subj":"1565","obj":"Tax:2697049"},{"id":"A1566","pred":"tao:has_database_id","subj":"1566","obj":"Tax:32644"},{"id":"A1567","pred":"tao:has_database_id","subj":"1567","obj":"Tax:9606"},{"id":"A1568","pred":"tao:has_database_id","subj":"1568","obj":"Tax:9606"},{"id":"A1569","pred":"tao:has_database_id","subj":"1569","obj":"Tax:9606"},{"id":"A1570","pred":"tao:has_database_id","subj":"1570","obj":"Tax:9606"},{"id":"A1571","pred":"tao:has_database_id","subj":"1571","obj":"Tax:9606"},{"id":"A1572","pred":"tao:has_database_id","subj":"1572","obj":"Tax:9606"},{"id":"A1573","pred":"tao:has_database_id","subj":"1573","obj":"Tax:9606"},{"subj":"1554","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1555","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1556","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1557","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1558","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1559","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1560","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1561","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1562","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1563","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1564","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1565","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1566","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1567","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1568","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1569","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1570","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1571","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1572","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1573","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecdd","default":true},{"id":"LitCovid-PD-UBERON","color":"#ecc393"},{"id":"LitCovid-PD-MONDO","color":"#a993ec"},{"id":"LitCovid-PD-CLO","color":"#96ec93"},{"id":"LitCovid-PD-CHEBI","color":"#ec93b0"},{"id":"LitCovid-PD-HP","color":"#93caec"},{"id":"LitCovid-sentences","color":"#e4ec93"},{"id":"LitCovid-PubTator","color":"#d993ec"}]}]}}