PMC:7386785 / 125010-127687 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T512 366-369 Disease denotes OTD http://purl.obolibrary.org/obo/MONDO_0009771
T513 711-719 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T514 846-850 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T515 857-866 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T516 867-869 Disease denotes RS http://purl.obolibrary.org/obo/MONDO_0010725

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T173 68-69 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T174 699-700 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T175 762-767 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T176 867-869 http://purl.obolibrary.org/obo/CLO_0008882 denotes RS
T177 1086-1087 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T178 1158-1159 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T179 1515-1519 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Test
T180 1525-1530 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T181 1547-1551 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T182 1646-1647 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T183 1749-1753 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T184 1827-1831 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T185 2128-2133 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T186 2457-2461 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2856 867-869 Chemical denotes RS http://purl.obolibrary.org/obo/CHEBI_73819

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 617-631 http://purl.obolibrary.org/obo/GO_0007608 denotes sense of smell
T2 777-791 http://purl.obolibrary.org/obo/GO_0007608 denotes sense of smell
T3 792-797 http://purl.obolibrary.org/obo/GO_0050909 denotes taste

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1576 0-21 Sentence denotes Study characteristics
T1577 22-355 Sentence denotes Patient Sampling Purpose: to analyse OTDs as a diagnostic criterion for COVID‐19Design: cross‐sectional, prospective single‐centre studyRecruitment: all suspected cases presenting to the EDSample size: n = 870 (cases = 154)Inclusion criteria:presence of respiratory symptoms and suspicious epidemiological links or travel history or
T1578 356-369 Sentence denotes new onset OTD
T1579 370-403 Sentence denotes Exclusion criteria: not specified
T1580 404-542 Sentence denotes Patient characteristics and setting Facility cases: positive RT‐PCR for 2019‐nCovFacility controls: negative RT‐PCR for 2019‐nCovCountry:
T1581 543-558 Sentence denotes SingaporeDates:
T1582 559-755 Sentence denotes 26 March 2020‐10 April 2020Symptoms and severity: loss of sense of smell/tasteDemographics: not specifiedExposure history: close contact of a confirmed COVID‐19 case: cases 42/112, controls 37/679
T1583 756-797 Sentence denotes Index tests Loss of sense of smell/taste
T1584 798-866 Sentence denotes Target condition and reference standard(s) TC: SARS‐Cov‐2 infection
T1585 867-899 Sentence denotes RS: RT‐PCR (oropharyngeal swabs)
T1586 900-940 Sentence denotes Flow and timing Time interval: same day
T1587 941-955 Sentence denotes Comparative  
T1588 956-964 Sentence denotes Notes  
T1589 965-987 Sentence denotes Methodological quality
T1590 988-1053 Sentence denotes Item Authors' judgement Risk of bias Applicability concerns
T1591 1054-1063 Sentence denotes DOMAIN 1:
T1592 1064-1081 Sentence denotes Patient Selection
T1593 1082-1138 Sentence denotes Was a consecutive or random sample of patients enrolled?
T1594 1140-1153 Sentence denotes Unclear    
T1595 1154-1188 Sentence denotes Was a case‐control design avoided?
T1596 1190-1199 Sentence denotes Yes    
T1597 1200-1245 Sentence denotes Did the study avoid inappropriate exclusions?
T1598 1247-1260 Sentence denotes Unclear    
T1599 1261-1306 Sentence denotes Did the study avoid inappropriate inclusions?
T1600 1308-1317 Sentence denotes Yes    
T1601 1318-1387 Sentence denotes Could the selection of patients have introduced bias?   Low risk  
T1602 1388-1498 Sentence denotes Are there concerns that the included patients and setting do not match the review question?     Low concern
T1603 1499-1508 Sentence denotes DOMAIN 2:
T1604 1509-1531 Sentence denotes Index Test (All tests)
T1605 1532-1631 Sentence denotes Were the index test results interpreted without knowledge of the results of the reference standard?
T1606 1633-1642 Sentence denotes Yes    
T1607 1643-1689 Sentence denotes If a threshold was used, was it pre‐specified?
T1608 1691-1699 Sentence denotes No    
T1609 1700-1792 Sentence denotes Could the conduct or interpretation of the index test have introduced bias?   High risk  
T1610 1793-1915 Sentence denotes Are there concerns that the index test, its conduct, or interpretation differ from the review question?     Low concern
T1611 1916-1925 Sentence denotes DOMAIN 3:
T1612 1926-1944 Sentence denotes Reference Standard
T1613 1945-2022 Sentence denotes Is the reference standards likely to correctly classify the target condition?
T1614 2024-2033 Sentence denotes Yes    
T1615 2034-2134 Sentence denotes Were the reference standard results interpreted without knowledge of the results of the index tests?
T1616 2136-2149 Sentence denotes Unclear    
T1617 2150-2252 Sentence denotes Could the reference standard, its conduct, or its interpretation have introduced bias?   Low risk  
T1618 2253-2382 Sentence denotes Are there concerns that the target condition as defined by the reference standard does not match the question?     Low concern
T1619 2383-2392 Sentence denotes DOMAIN 4:
T1620 2393-2408 Sentence denotes Flow and Timing
T1621 2409-2485 Sentence denotes Was there an appropriate interval between index test and reference standard?
T1622 2487-2496 Sentence denotes Yes    
T1623 2497-2550 Sentence denotes Did all patients receive the same reference standard?
T1624 2552-2561 Sentence denotes Yes    
T1625 2562-2605 Sentence denotes Were all patients included in the analysis?
T1626 2607-2616 Sentence denotes Yes    
T1627 2617-2677 Sentence denotes Could the patient flow have introduced bias?   Low risk  

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2181 22-29 Species denotes Patient Tax:9606
2182 390-403 Species denotes not specified Tax:32644
2183 404-411 Species denotes Patient Tax:9606
2184 846-856 Species denotes SARS‐Cov‐2 Tax:2697049
2185 1064-1071 Species denotes Patient Tax:9606
2186 1120-1128 Species denotes patients Tax:9606
2187 1341-1349 Species denotes patients Tax:9606
2188 1425-1433 Species denotes patients Tax:9606
2189 2505-2513 Species denotes patients Tax:9606
2190 2571-2579 Species denotes patients Tax:9606
2191 2627-2634 Species denotes patient Tax:9606
2192 60-64 Disease denotes OTDs
2193 95-100 Disease denotes COVID MESH:C000657245
2194 277-297 Disease denotes respiratory symptoms MESH:D012818
2195 711-719 Disease denotes COVID‐19 MESH:C000657245