PMC:7386785 / 106388-109385 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 626-632 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T7 1062-1068 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T8 1101-1105 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T79 626-632 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T80 1062-1068 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T81 1101-1105 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T453 621-632 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T454 853-861 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T455 985-993 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T456 1057-1068 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T457 1095-1105 Disease denotes Runny nose http://purl.obolibrary.org/obo/MONDO_0003014
T458 1154-1158 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T459 1165-1174 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T460 1175-1177 Disease denotes RS http://purl.obolibrary.org/obo/MONDO_0010725

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T50 280-282 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T51 725-727 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T52 824-826 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T53 850-852 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T54 883-884 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 1029-1034 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T56 1101-1105 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T57 1175-1177 http://purl.obolibrary.org/obo/CLO_0008882 denotes RS
T58 1398-1399 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 1470-1471 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 1831-1835 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Test
T61 1841-1846 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T62 1863-1867 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T63 1962-1963 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 2065-2069 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T65 2143-2147 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T66 2444-2449 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T67 2773-2777 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T57995 735-740 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T28456 787-792 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T44782 1175-1177 Chemical denotes RS http://purl.obolibrary.org/obo/CHEBI_73819

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T378 597-602 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T379 604-609 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T380 611-619 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T381 621-632 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T382 634-641 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T383 1036-1041 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T384 1042-1047 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T385 1048-1056 Phenotype denotes Dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T386 1057-1068 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T387 1069-1076 Phenotype denotes Fatigue http://purl.obolibrary.org/obo/HP_0012378
T388 1095-1105 Phenotype denotes Runny nose http://purl.obolibrary.org/obo/HP_0031417

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1225 0-21 Sentence denotes Study characteristics
T1226 22-365 Sentence denotes Patient Sampling Purpose: analyse the clinical features and imaging manifestations of COVID‐19Design: cross‐sectional, single‐centre, retrospective studyRecruitment: clinically suspected cases who were sent to hospital for screeningSample size: n = 86 (n = 11)Inclusion criteria: clinically suspected patientsExclusion criteria: not specified
T1227 366-529 Sentence denotes Patient characteristics and setting Facility cases: positive RT‐PCR via nasopharyngeal swabFacility controls: negative RT‐PCR via nasopharyngeal swab (1x)Country:
T1228 530-541 Sentence denotes ChinaDates:
T1229 542-710 Sentence denotes 23 January 2020‐16 February 2020Symptoms and severity: fever, cough, dyspnoea, sore throat, fatigue, systemic soreness, runny noseDemographics: M/F: total 39/47, cases:
T1230 711-778 Sentence denotes 5/6, controls 34/40Case group: mean age 40.73 ± 11.32 years, 5 men.
T1231 779-847 Sentence denotes Control group: mean age 39.67 ± 13.90 years, 34 menExposure history:
T1232 848-1022 Sentence denotes 7/11 COVID‐19 patients (63.6%) had a history of travel to Hubei (5 Wuhan, 1 Huanggang, 1 Xiaogan), 2 patients had close contact with the COVID‐19 patients, and 2 taxi drivers
T1233 1023-1041 Sentence denotes Index tests Fever
T1234 1042-1047 Sentence denotes Cough
T1235 1048-1056 Sentence denotes Dyspnoea
T1236 1057-1068 Sentence denotes Sore throat
T1237 1069-1076 Sentence denotes Fatigue
T1238 1077-1094 Sentence denotes Systemic soreness
T1239 1095-1105 Sentence denotes Runny nose
T1240 1106-1174 Sentence denotes Target condition and reference standard(s) TC: SARS‐Cov‐2 infection
T1241 1175-1207 Sentence denotes RS: RT‐PCR (nasopharyngeal swab)
T1242 1208-1252 Sentence denotes Flow and timing Time interval not specified
T1243 1253-1267 Sentence denotes Comparative  
T1244 1268-1276 Sentence denotes Notes  
T1245 1277-1299 Sentence denotes Methodological quality
T1246 1300-1365 Sentence denotes Item Authors' judgement Risk of bias Applicability concerns
T1247 1366-1375 Sentence denotes DOMAIN 1:
T1248 1376-1393 Sentence denotes Patient Selection
T1249 1394-1450 Sentence denotes Was a consecutive or random sample of patients enrolled?
T1250 1452-1465 Sentence denotes Unclear    
T1251 1466-1500 Sentence denotes Was a case‐control design avoided?
T1252 1502-1511 Sentence denotes Yes    
T1253 1512-1557 Sentence denotes Did the study avoid inappropriate exclusions?
T1254 1559-1572 Sentence denotes Unclear    
T1255 1573-1618 Sentence denotes Did the study avoid inappropriate inclusions?
T1256 1620-1633 Sentence denotes Unclear    
T1257 1634-1707 Sentence denotes Could the selection of patients have introduced bias?   Unclear risk  
T1258 1708-1814 Sentence denotes Are there concerns that the included patients and setting do not match the review question?     Unclear
T1259 1815-1824 Sentence denotes DOMAIN 2:
T1260 1825-1847 Sentence denotes Index Test (All tests)
T1261 1848-1947 Sentence denotes Were the index test results interpreted without knowledge of the results of the reference standard?
T1262 1949-1958 Sentence denotes Yes    
T1263 1959-2005 Sentence denotes If a threshold was used, was it pre‐specified?
T1264 2007-2015 Sentence denotes No    
T1265 2016-2108 Sentence denotes Could the conduct or interpretation of the index test have introduced bias?   High risk  
T1266 2109-2231 Sentence denotes Are there concerns that the index test, its conduct, or interpretation differ from the review question?     Low concern
T1267 2232-2241 Sentence denotes DOMAIN 3:
T1268 2242-2260 Sentence denotes Reference Standard
T1269 2261-2338 Sentence denotes Is the reference standards likely to correctly classify the target condition?
T1270 2340-2349 Sentence denotes Yes    
T1271 2350-2450 Sentence denotes Were the reference standard results interpreted without knowledge of the results of the index tests?
T1272 2452-2465 Sentence denotes Unclear    
T1273 2466-2568 Sentence denotes Could the reference standard, its conduct, or its interpretation have introduced bias?   Low risk  
T1274 2569-2698 Sentence denotes Are there concerns that the target condition as defined by the reference standard does not match the question?     Low concern
T1275 2699-2708 Sentence denotes DOMAIN 4:
T1276 2709-2724 Sentence denotes Flow and Timing
T1277 2725-2801 Sentence denotes Was there an appropriate interval between index test and reference standard?
T1278 2803-2816 Sentence denotes Unclear    
T1279 2817-2870 Sentence denotes Did all patients receive the same reference standard?
T1280 2872-2881 Sentence denotes Yes    
T1281 2882-2925 Sentence denotes Were all patients included in the analysis?
T1282 2927-2936 Sentence denotes Yes    
T1283 2937-2997 Sentence denotes Could the patient flow have introduced bias?   Low risk  

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1957 22-29 Species denotes Patient Tax:9606
1958 352-365 Species denotes not specified Tax:32644
1959 366-373 Species denotes Patient Tax:9606
1960 774-777 Species denotes men Tax:9606
1961 862-870 Species denotes patients Tax:9606
1962 949-957 Species denotes patients Tax:9606
1963 994-1002 Species denotes patients Tax:9606
1964 1154-1164 Species denotes SARS‐Cov‐2 Tax:2697049
1965 1239-1252 Species denotes not specified Tax:32644
1966 1376-1383 Species denotes Patient Tax:9606
1967 1432-1440 Species denotes patients Tax:9606
1968 1657-1665 Species denotes patients Tax:9606
1969 1745-1753 Species denotes patients Tax:9606
1970 2825-2833 Species denotes patients Tax:9606
1971 2891-2899 Species denotes patients Tax:9606
1972 2947-2954 Species denotes patient Tax:9606
1973 109-114 Disease denotes COVID MESH:C000657245
1974 597-602 Disease denotes fever MESH:D005334
1975 604-609 Disease denotes cough MESH:D003371
1976 611-619 Disease denotes dyspnoea MESH:D004417
1977 621-632 Disease denotes sore throat MESH:D010608
1978 634-641 Disease denotes fatigue MESH:D005221
1979 853-861 Disease denotes COVID‐19 MESH:C000657245
1980 985-993 Disease denotes COVID‐19 MESH:C000657245
1981 1036-1100 Disease denotes Fever Cough Dyspnoea Sore throat Fatigue Systemic soreness Runny