PMC:7386785 / 103091-106376 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T443 71-79 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T444 244-248 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T445 497-501 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T446 897-901 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T447 960-964 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T448 1357-1366 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T449 1432-1436 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T450 1443-1452 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T451 1453-1455 Disease denotes RS http://purl.obolibrary.org/obo/MONDO_0010725
T452 1457-1461 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T25 232-239 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T26 435-437 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T27 485-492 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T28 525-532 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T29 780-791 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T30 809-810 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 912-916 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T32 936-940 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T33 975-979 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T34 1267-1269 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T35 1270-1272 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T36 1293-1295 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T37 1337-1342 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T38 1453-1455 http://purl.obolibrary.org/obo/CLO_0008882 denotes RS
T39 1472-1476 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T40 1703-1704 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 1771-1772 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 2123-2127 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Test
T43 2133-2138 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T44 2155-2159 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T45 2254-2255 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 2357-2361 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T47 2435-2439 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T48 2736-2741 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T49 3065-3069 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T95237 56-58 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T34688 294-296 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T43166 1344-1346 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T67561 1453-1455 Chemical denotes RS http://purl.obolibrary.org/obo/CHEBI_73819

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T369 579-584 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T370 586-591 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T371 593-612 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T372 1086-1091 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T373 1093-1098 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T374 1100-1119 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T375 1357-1366 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T376 1368-1376 Phenotype denotes vomiting http://purl.obolibrary.org/obo/HP_0002013
T377 1377-1383 Phenotype denotes nausea http://purl.obolibrary.org/obo/HP_0002018

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1170 0-21 Sentence denotes Study characteristics
T1171 22-390 Sentence denotes Patient Sampling Purpose: assess GI symptoms in COVID‐19 and their association with short‐term outcomesDesign: diagnostic case‐control, retrospective studyRecruitment: adults who underwent nasopharyngeal swab testing for SARS‐CoV‐2 at outpatient settings: clinics or the ED, of New York‐Presbyterian‐Columbia or the medical centre's affiliates in New YorkSample size:
T1172 391-508 Sentence denotes 516 (278 cases)Inclusion criteria: adults ≥ 18 years of age who underwent nasopharyngeal swab testing for SARS‐CoV‐2.
T1173 509-843 Sentence denotes Indications for testing during this period were respiratory symptoms (cough, fever, shortness of breath) with intent to hospitalise or the same symptoms in essential personnel.Exclusion criteria: if insufficient data were available in the electronic medical record or if testing was performed during a pre‐existing inpatient admission
T1174 844-1013 Sentence denotes Patient characteristics and setting Facility cases: SARS‐CoV‐2 PCR test result positive (1 test)Facility controls: SARS‐CoV‐2 PCR test result negativeCountry: USADates:
T1175 1014-1196 Sentence denotes 10 March 2020‐21 March 2020Symptoms and severity: respiratory symptoms (cough, fever, shortness of breath) with intent to hospitalise or in essential workersDemographics: median age:
T1176 1197-1266 Sentence denotes 51‐70 years (cases and controls), gender distribution: cases (M/F(%):
T1177 1267-1292 Sentence denotes 52/48), controls (M/F(%):
T1178 1293-1330 Sentence denotes 45/55)Exposure history: not specified
T1179 1331-1383 Sentence denotes Index tests GI symptoms: diarrhoea, vomiting/nausea
T1180 1384-1452 Sentence denotes Target condition and reference standard(s) TC: SARS‐Cov‐2 infection
T1181 1453-1504 Sentence denotes RS: SARS‐CoV‐2 PCR test, once (nasopharyngeal swab)
T1182 1505-1557 Sentence denotes Flow and timing Time interval: both taken at intake
T1183 1558-1572 Sentence denotes Comparative  
T1184 1573-1581 Sentence denotes Notes  
T1185 1582-1604 Sentence denotes Methodological quality
T1186 1605-1670 Sentence denotes Item Authors' judgement Risk of bias Applicability concerns
T1187 1671-1680 Sentence denotes DOMAIN 1:
T1188 1681-1698 Sentence denotes Patient Selection
T1189 1699-1755 Sentence denotes Was a consecutive or random sample of patients enrolled?
T1190 1757-1766 Sentence denotes Yes    
T1191 1767-1801 Sentence denotes Was a case‐control design avoided?
T1192 1803-1811 Sentence denotes No    
T1193 1812-1857 Sentence denotes Did the study avoid inappropriate exclusions?
T1194 1859-1868 Sentence denotes Yes    
T1195 1869-1914 Sentence denotes Did the study avoid inappropriate inclusions?
T1196 1916-1925 Sentence denotes Yes    
T1197 1926-1995 Sentence denotes Could the selection of patients have introduced bias?   Low risk  
T1198 1996-2106 Sentence denotes Are there concerns that the included patients and setting do not match the review question?     Low concern
T1199 2107-2116 Sentence denotes DOMAIN 2:
T1200 2117-2139 Sentence denotes Index Test (All tests)
T1201 2140-2239 Sentence denotes Were the index test results interpreted without knowledge of the results of the reference standard?
T1202 2241-2250 Sentence denotes Yes    
T1203 2251-2297 Sentence denotes If a threshold was used, was it pre‐specified?
T1204 2299-2307 Sentence denotes No    
T1205 2308-2400 Sentence denotes Could the conduct or interpretation of the index test have introduced bias?   High risk  
T1206 2401-2523 Sentence denotes Are there concerns that the index test, its conduct, or interpretation differ from the review question?     Low concern
T1207 2524-2533 Sentence denotes DOMAIN 3:
T1208 2534-2552 Sentence denotes Reference Standard
T1209 2553-2630 Sentence denotes Is the reference standards likely to correctly classify the target condition?
T1210 2632-2641 Sentence denotes Yes    
T1211 2642-2742 Sentence denotes Were the reference standard results interpreted without knowledge of the results of the index tests?
T1212 2744-2757 Sentence denotes Unclear    
T1213 2758-2860 Sentence denotes Could the reference standard, its conduct, or its interpretation have introduced bias?   Low risk  
T1214 2861-2990 Sentence denotes Are there concerns that the target condition as defined by the reference standard does not match the question?     Low concern
T1215 2991-3000 Sentence denotes DOMAIN 4:
T1216 3001-3016 Sentence denotes Flow and Timing
T1217 3017-3093 Sentence denotes Was there an appropriate interval between index test and reference standard?
T1218 3095-3104 Sentence denotes Yes    
T1219 3105-3158 Sentence denotes Did all patients receive the same reference standard?
T1220 3160-3169 Sentence denotes Yes    
T1221 3170-3213 Sentence denotes Were all patients included in the analysis?
T1222 3215-3224 Sentence denotes Yes    
T1223 3225-3285 Sentence denotes Could the patient flow have introduced bias?   Low risk  

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1903 22-29 Species denotes Patient Tax:9606
1904 244-254 Species denotes SARS‐CoV‐2 Tax:2697049
1905 258-268 Species denotes outpatient Tax:9606
1906 497-507 Species denotes SARS‐CoV‐2 Tax:2697049
1907 844-851 Species denotes Patient Tax:9606
1908 897-907 Species denotes SARS‐CoV‐2 Tax:2697049
1909 960-970 Species denotes SARS‐CoV‐2 Tax:2697049
1910 1317-1330 Species denotes not specified Tax:32644
1911 1432-1442 Species denotes SARS‐Cov‐2 Tax:2697049
1912 1457-1467 Species denotes SARS‐CoV‐2 Tax:2697049
1913 1681-1688 Species denotes Patient Tax:9606
1914 1737-1745 Species denotes patients Tax:9606
1915 1949-1957 Species denotes patients Tax:9606
1916 2033-2041 Species denotes patients Tax:9606
1917 3113-3121 Species denotes patients Tax:9606
1918 3179-3187 Species denotes patients Tax:9606
1919 3235-3242 Species denotes patient Tax:9606
1920 71-79 Disease denotes COVID‐19 MESH:C000657245
1921 557-577 Disease denotes respiratory symptoms MESH:D012818
1922 579-584 Disease denotes cough MESH:D003371
1923 586-591 Disease denotes fever MESH:D005334
1924 593-612 Disease denotes shortness of breath MESH:D004417
1925 1064-1084 Disease denotes respiratory symptoms MESH:D012818
1926 1086-1091 Disease denotes cough MESH:D003371
1927 1093-1098 Disease denotes fever MESH:D005334
1928 1100-1119 Disease denotes shortness of breath MESH:D004417
1929 1357-1366 Disease denotes diarrhoea MESH:D003967
1930 1368-1376 Disease denotes vomiting MESH:D014839
1931 1377-1383 Disease denotes nausea MESH:D009325