PMC:7377212 / 18816-19993
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T147 | 340-354 | UBERON:0001728 | denotes | ng only, and i |
| T148 | 486-498 | UBERON:0001852 | denotes | gnostic algo |
| T149 | 524-527 | SO:0000153 | denotes | cli |
| T150 | 730-740 | UBERON:0001004 | denotes | ot yet und |
| T151 | 784-790 | UBERON:0007311 | denotes | iteria |
| T152 | 795-803 | UBERON:0003126 | denotes | proven o |
| T153 | 947-958 | NCBITaxon:1 | denotes | ethasone is |
| T154 | 1134-1147 | CHEBI:41879;CHEBI:41879 | denotes | tion between |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T49 | 589-595 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T46 | 589-595 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 569 | 129-137 | Species | denotes | patients | Tax:9606 |
| 570 | 255-263 | Species | denotes | patients | Tax:9606 |
| 571 | 1007-1015 | Species | denotes | patients | Tax:9606 |
| 572 | 577-588 | Species | denotes | aspergillus | Tax:746128 |
| 573 | 942-955 | Chemical | denotes | dexamethasone | MESH:D003907 |
| 574 | 814-827 | Disease | denotes | aspergillosis | MESH:D001228 |
| 575 | 1028-1036 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T193 | 279-283 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T194 | 407-411 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T195 | 508-512 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T196 | 720-724 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T197 | 814-827 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T198 | 1028-1036 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T199 | 1069-1091 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T200 | 1078-1091 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T201 | 1172-1176 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T172 | 233-235 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
| T173 | 467-468 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T174 | 520-523 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T175 | 893-895 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T282 | 187-190 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T283 | 330-333 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T284 | 942-955 | Chemical | denotes | dexamethasone | http://purl.obolibrary.org/obo/CHEBI_41879 |
| T285 | 1147-1161 | Chemical | denotes | corticosteroid | http://purl.obolibrary.org/obo/CHEBI_50858 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32703771-30076119-29390921 | 829-831 | 30076119 | denotes | 13 |
| 32703771-28387526-29390922 | 833-835 | 28387526 | denotes | 14 |
| 32703771-27365388-29390923 | 893-895 | 27365388 | denotes | 36 |
| 32703771-29544767-29390924 | 897-899 | 29544767 | denotes | 37 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T96 | 0-237 | Sentence | denotes | Current guidelines advise against routine diagnostic bronchoscopy due to the risk of aerosol generation; recommending it only in patients in whom nasopharyngeal cultures are negative and BAL sampling will change clinical management [35]. |
| T97 | 238-434 | Sentence | denotes | In practice many patients with suspected CAPA undergo endotracheal sampling or non-directed BAL sampling only, and it is important that any case definition proposed for CAPA reflects this reality. |
| T98 | 435-656 | Sentence | denotes | To acknowledge this, we propose a screening and diagnostic algorithm for CAPA, which has clinical (respiratory) deterioration and/or positive aspergillus sputum, or tracheal aspirate culture as its entry point (figure 1). |
| T99 | 657-901 | Sentence | denotes | Although the host risk factors and clinical characteristics of CAPA are not yet understood, those individuals fulfilling the criteria for proven or probable aspergillosis [13, 14] should then be treated according to current guidelines [36, 37]. |
| T100 | 902-1177 | Sentence | denotes | Importantly, now that adjunctive use of dexamethasone is likely to become widespread in the treatment of patients with severe COVID-19 [17], intensified screening for invasive aspergillosis is indicated to study the possible association between corticosteroid usage and CAPA. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32703771-30076119-29390921 | 829-831 | 30076119 | denotes | 13 |
| 32703771-28387526-29390922 | 833-835 | 28387526 | denotes | 14 |
| 32703771-27365388-29390923 | 893-895 | 27365388 | denotes | 36 |
| 32703771-29544767-29390924 | 897-899 | 29544767 | denotes | 37 |