
PMC:7377212 / 1847-2697
Annnotations
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T40 | 90-103 | NCBITaxon:11118 | denotes | coronaviruses |
T41 | 159-167 | SP_10 | denotes | SARS-CoV |
T42 | 217-225 | SP_9 | denotes | -coronav |
T43 | 258-266 | SP_7 | denotes | COVID-19 |
T44 | 324-330 | NCBITaxon:4751 | denotes | fungal |
T45 | 342-360 | NCBITaxon:5059 | denotes | Aspergillus flavus |
T46 | 383-400 | UBERON:0000065 | denotes | respiratory tract |
T47 | 440-448 | SP_7 | denotes | COVID-19 |
T48 | 511-522 | NCBITaxon:5052 | denotes | Aspergillus |
T49 | 523-527 | NCBITaxon:species | denotes | spp. |
T93865 | 90-103 | NCBITaxon:11118 | denotes | coronaviruses |
T46081 | 159-167 | SP_10 | denotes | SARS-CoV |
T14192 | 258-266 | SP_7 | denotes | COVID-19 |
T76429 | 324-330 | NCBITaxon:4751 | denotes | fungal |
T22991 | 342-360 | NCBITaxon:5059 | denotes | Aspergillus flavus |
T30496 | 383-400 | UBERON:0000065 | denotes | respiratory tract |
T8992 | 440-448 | SP_7 | denotes | COVID-19 |
T8991 | 511-522 | NCBITaxon:5052 | denotes | Aspergillus |
T96800 | 523-527 | NCBITaxon:species | denotes | spp. |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T4 | 383-400 | Body_part | denotes | respiratory tract | http://purl.org/sig/ont/fma/fma265130 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T6 | 383-400 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
82 | 90-103 | Species | denotes | coronaviruses | Tax:11118 |
83 | 112-167 | Species | denotes | severe acute respiratory syndrome-coronavirus (SARS-CoV | Tax:694009 |
85 | 342-360 | Species | denotes | Aspergillus flavus | Tax:5059 |
86 | 418-426 | Species | denotes | patients | Tax:9606 |
87 | 621-629 | Species | denotes | patients | Tax:9606 |
88 | 841-849 | Species | denotes | patients | Tax:9606 |
89 | 511-522 | Species | denotes | Aspergillus | Tax:746128 |
90 | 0-14 | Disease | denotes | Fungal disease | MESH:D009181 |
91 | 31-53 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
92 | 185-217 | Disease | denotes | Middle East Respiratory Syndrome | MESH:D018352 |
93 | 258-266 | Disease | denotes | COVID-19 | MESH:C000657245 |
94 | 305-340 | Disease | denotes | secondary invasive fungal infection | MESH:D060085 |
95 | 440-448 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T41 | 31-53 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
T42 | 40-53 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T43 | 112-145 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T44 | 159-167 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T45 | 258-266 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T46 | 324-340 | Disease | denotes | fungal infection | http://purl.obolibrary.org/obo/MONDO_0002041 |
T47 | 331-340 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T48 | 440-448 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T49 | 787-791 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16 | 54-57 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T17 | 175-179 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 4, 5 |
T18 | 565-567 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
T19 | 580-581 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T20 | 757-759 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T21 | 810-812 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12 | 0-234 | Sentence | denotes | Fungal disease consistent with invasive aspergillosis has been observed with other severe coronaviruses such as severe acute respiratory syndrome-coronavirus (SARS-CoV) 2003 [4, 5] and Middle East Respiratory Syndrome-coronavirus [6]. |
T13 | 235-341 | Sentence | denotes | From the outset of the COVID-19 pandemic, there were warning signs of secondary invasive fungal infection. |
T14 | 342-651 | Sentence | denotes | Aspergillus flavus was isolated from the respiratory tract in one out of 99 patients in the first COVID-19 cohort from Wuhan, China to be reported in any detail [2] and Aspergillus spp. were isolated from two (3.8%) out of 52 patients in a subsequent cohort of critically unwell patients from this region [7]. |
T15 | 652-850 | Sentence | denotes | More recently, retrospective case series from Belgium [8], France [9], The Netherlands [10] and Germany [11] have reported evidence of CAPA in an alarming 20–35% of mechanically ventilated patients. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T4 | 315-340 | Phenotype | denotes | invasive fungal infection | http://purl.obolibrary.org/obo/HP_0020101 |