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PMC:7377212 / 1847-2697 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T40 90-103 NCBITaxon:11118 denotes coronaviruses
T41 159-167 SP_10 denotes SARS-CoV
T42 217-225 SP_9 denotes -coronav
T43 258-266 SP_7 denotes COVID-19
T44 324-330 NCBITaxon:4751 denotes fungal
T45 342-360 NCBITaxon:5059 denotes Aspergillus flavus
T46 383-400 UBERON:0000065 denotes respiratory tract
T47 440-448 SP_7 denotes COVID-19
T48 511-522 NCBITaxon:5052 denotes Aspergillus
T49 523-527 NCBITaxon:species denotes spp.
T93865 90-103 NCBITaxon:11118 denotes coronaviruses
T46081 159-167 SP_10 denotes SARS-CoV
T14192 258-266 SP_7 denotes COVID-19
T76429 324-330 NCBITaxon:4751 denotes fungal
T22991 342-360 NCBITaxon:5059 denotes Aspergillus flavus
T30496 383-400 UBERON:0000065 denotes respiratory tract
T8992 440-448 SP_7 denotes COVID-19
T8991 511-522 NCBITaxon:5052 denotes Aspergillus
T96800 523-527 NCBITaxon:species denotes spp.

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 383-400 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 383-400 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
82 90-103 Species denotes coronaviruses Tax:11118
83 112-167 Species denotes severe acute respiratory syndrome-coronavirus (SARS-CoV Tax:694009
85 342-360 Species denotes Aspergillus flavus Tax:5059
86 418-426 Species denotes patients Tax:9606
87 621-629 Species denotes patients Tax:9606
88 841-849 Species denotes patients Tax:9606
89 511-522 Species denotes Aspergillus Tax:746128
90 0-14 Disease denotes Fungal disease MESH:D009181
91 31-53 Disease denotes invasive aspergillosis MESH:D055744
92 185-217 Disease denotes Middle East Respiratory Syndrome MESH:D018352
93 258-266 Disease denotes COVID-19 MESH:C000657245
94 305-340 Disease denotes secondary invasive fungal infection MESH:D060085
95 440-448 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T41 31-53 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T42 40-53 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T43 112-145 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T44 159-167 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T45 258-266 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 324-340 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T47 331-340 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T48 440-448 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 787-791 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T16 54-57 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T17 175-179 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4, 5
T18 565-567 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T19 580-581 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 757-759 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T21 810-812 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T12 0-234 Sentence denotes Fungal disease consistent with invasive aspergillosis has been observed with other severe coronaviruses such as severe acute respiratory syndrome-coronavirus (SARS-CoV) 2003 [4, 5] and Middle East Respiratory Syndrome-coronavirus [6].
T13 235-341 Sentence denotes From the outset of the COVID-19 pandemic, there were warning signs of secondary invasive fungal infection.
T14 342-651 Sentence denotes Aspergillus flavus was isolated from the respiratory tract in one out of 99 patients in the first COVID-19 cohort from Wuhan, China to be reported in any detail [2] and Aspergillus spp. were isolated from two (3.8%) out of 52 patients in a subsequent cohort of critically unwell patients from this region [7].
T15 652-850 Sentence denotes More recently, retrospective case series from Belgium [8], France [9], The Netherlands [10] and Germany [11] have reported evidence of CAPA in an alarming 20–35% of mechanically ventilated patients.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 315-340 Phenotype denotes invasive fungal infection http://purl.obolibrary.org/obo/HP_0020101