PMC:7377212 / 1847-2697
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T40 | 90-103 | NCBITaxon:11118 | denotes | coronaviruses |
| T41 | 159-167 | SP_10 | denotes | SARS-CoV |
| T42 | 217-225 | SP_9 | denotes | -coronav |
| T43 | 258-266 | SP_7 | denotes | COVID-19 |
| T44 | 324-330 | NCBITaxon:4751 | denotes | fungal |
| T45 | 342-360 | NCBITaxon:5059 | denotes | Aspergillus flavus |
| T46 | 383-400 | UBERON:0000065 | denotes | respiratory tract |
| T47 | 440-448 | SP_7 | denotes | COVID-19 |
| T48 | 511-522 | NCBITaxon:5052 | denotes | Aspergillus |
| T49 | 523-527 | NCBITaxon:species | denotes | spp. |
| T93865 | 90-103 | NCBITaxon:11118 | denotes | coronaviruses |
| T46081 | 159-167 | SP_10 | denotes | SARS-CoV |
| T14192 | 258-266 | SP_7 | denotes | COVID-19 |
| T76429 | 324-330 | NCBITaxon:4751 | denotes | fungal |
| T22991 | 342-360 | NCBITaxon:5059 | denotes | Aspergillus flavus |
| T30496 | 383-400 | UBERON:0000065 | denotes | respiratory tract |
| T8992 | 440-448 | SP_7 | denotes | COVID-19 |
| T8991 | 511-522 | NCBITaxon:5052 | denotes | Aspergillus |
| T96800 | 523-527 | NCBITaxon:species | denotes | spp. |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T4 | 383-400 | Body_part | denotes | respiratory tract | http://purl.org/sig/ont/fma/fma265130 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T6 | 383-400 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 82 | 90-103 | Species | denotes | coronaviruses | Tax:11118 |
| 83 | 112-167 | Species | denotes | severe acute respiratory syndrome-coronavirus (SARS-CoV | Tax:694009 |
| 85 | 342-360 | Species | denotes | Aspergillus flavus | Tax:5059 |
| 86 | 418-426 | Species | denotes | patients | Tax:9606 |
| 87 | 621-629 | Species | denotes | patients | Tax:9606 |
| 88 | 841-849 | Species | denotes | patients | Tax:9606 |
| 89 | 511-522 | Species | denotes | Aspergillus | Tax:746128 |
| 90 | 0-14 | Disease | denotes | Fungal disease | MESH:D009181 |
| 91 | 31-53 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
| 92 | 185-217 | Disease | denotes | Middle East Respiratory Syndrome | MESH:D018352 |
| 93 | 258-266 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 94 | 305-340 | Disease | denotes | secondary invasive fungal infection | MESH:D060085 |
| 95 | 440-448 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T41 | 31-53 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T42 | 40-53 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T43 | 112-145 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T44 | 159-167 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T45 | 258-266 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T46 | 324-340 | Disease | denotes | fungal infection | http://purl.obolibrary.org/obo/MONDO_0002041 |
| T47 | 331-340 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T48 | 440-448 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T49 | 787-791 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 54-57 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T17 | 175-179 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 4, 5 |
| T18 | 565-567 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
| T19 | 580-581 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T20 | 757-759 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T21 | 810-812 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12 | 0-234 | Sentence | denotes | Fungal disease consistent with invasive aspergillosis has been observed with other severe coronaviruses such as severe acute respiratory syndrome-coronavirus (SARS-CoV) 2003 [4, 5] and Middle East Respiratory Syndrome-coronavirus [6]. |
| T13 | 235-341 | Sentence | denotes | From the outset of the COVID-19 pandemic, there were warning signs of secondary invasive fungal infection. |
| T14 | 342-651 | Sentence | denotes | Aspergillus flavus was isolated from the respiratory tract in one out of 99 patients in the first COVID-19 cohort from Wuhan, China to be reported in any detail [2] and Aspergillus spp. were isolated from two (3.8%) out of 52 patients in a subsequent cohort of critically unwell patients from this region [7]. |
| T15 | 652-850 | Sentence | denotes | More recently, retrospective case series from Belgium [8], France [9], The Netherlands [10] and Germany [11] have reported evidence of CAPA in an alarming 20–35% of mechanically ventilated patients. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T4 | 315-340 | Phenotype | denotes | invasive fungal infection | http://purl.obolibrary.org/obo/HP_0020101 |