PMC:7377212 / 13131-15018
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T36 | 593-598 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T37 | 1462-1467 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T38 | 1589-1595 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T33 | 593-598 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T34 | 1462-1467 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T35 | 1589-1595 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 474 | 69-77 | Species | denotes | patients | Tax:9606 |
| 475 | 1101-1109 | Species | denotes | patients | Tax:9606 |
| 476 | 1264-1272 | Species | denotes | patients | Tax:9606 |
| 477 | 1786-1794 | Species | denotes | patients | Tax:9606 |
| 478 | 479-490 | Species | denotes | Aspergillus | Tax:746128 |
| 479 | 1115-1126 | Species | denotes | aspergillus | Tax:746128 |
| 480 | 571-584 | Chemical | denotes | galactomannan | MESH:C012990 |
| 481 | 586-588 | Chemical | denotes | GM | MESH:C012990 |
| 482 | 946-963 | Disease | denotes | tracheobronchitis | |
| 483 | 1800-1808 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T159 | 9-22 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T160 | 659-663 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T161 | 904-926 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T162 | 913-926 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T163 | 946-963 | Disease | denotes | tracheobronchitis | http://purl.obolibrary.org/obo/MONDO_0021925 |
| T164 | 1050-1054 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T165 | 1224-1228 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T166 | 1800-1808 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T167 | 1861-1865 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T133 | 511-512 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T134 | 690-692 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T135 | 824-825 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T136 | 1250-1252 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T137 | 1340-1341 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T138 | 1460-1461 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T139 | 1579-1580 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T214 | 546-549 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T215 | 571-584 | Chemical | denotes | galactomannan | http://purl.obolibrary.org/obo/CHEBI_27680 |
| T216 | 586-588 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T218 | 599-602 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T219 | 857-860 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T220 | 1287-1290 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T221 | 1342-1345 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T222 | 1346-1348 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T224 | 1434-1437 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T225 | 1468-1470 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T227 | 1518-1521 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T228 | 1547-1550 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T229 | 1551-1553 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T231 | 1660-1671 | Chemical | denotes | antifungals | http://purl.obolibrary.org/obo/CHEBI_35718 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32703771-22517788-29390908 | 287-289 | 22517788 | denotes | 24 |
| 32703771-30076119-29390909 | 332-334 | 30076119 | denotes | 13 |
| 32703771-32445626-29390910 | 1194-1195 | 32445626 | denotes | 9 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T15 | 571-584 | GlycoEpitope | denotes | galactomannan | http://www.glycoepitope.jp/epitopes/EP0510 |
| T16 | 586-588 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T17 | 1346-1348 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T18 | 1468-1470 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T19 | 1551-1553 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T69 | 292-603 | Sentence | denotes | For these reasons Schauwvlieghe et al. [13] developed the modified AspICU criteria to help diagnose IAPA which (in the absence of histology) essentially relies on mycological evidence of Aspergillus spp. in the form of a positive bronchoalveolar lavage (BAL) culture or positive galactomannan (GM) in serum/BAL. |
| T70 | 604-796 | Sentence | denotes | Applying these modified AspICU criteria, five cases of CAPA in table 1 were “proven”, 11 “putative” and 17 might be considered putative but with caveats which have been described in the table. |
| T71 | 797-976 | Sentence | denotes | For example, in many cases a tracheal aspirate, rather than BAL, provided the only mycological evidence of invasive aspergillosis (in the absence of tracheobronchitis/cavitation). |
| T72 | 977-1162 | Sentence | denotes | There should therefore be caution about over-estimating the incidence of CAPA from such case series, which may include some patients with aspergillus colonisation or contamination only. |
| T73 | 1163-1605 | Sentence | denotes | In the study by Alanio et al. [9] which reported evidence of CAPA in nine (33%) out of 27 ventilated patients who underwent BAL/tracheal aspirate, one case was defined based on a BAL GM of 0.89 (below the usual cut-off of 1.0), two based on tracheal aspirate rather than BAL culture, one based on a serum GM of 0.51 (cut-off being 0.50) and in four cases BAL culture was positive but BAL GM negative, which suggests a lack of tissue invasion. |
| T74 | 1606-1687 | Sentence | denotes | Indeed, out of seven cases that were not treated with antifungals, five survived. |
| T75 | 1688-1887 | Sentence | denotes | Accordingly, larger, prospective, multi-site studies are needed to refine the AspICU criteria for patients with COVID-19, as well as to estimate incidence and the impact of CAPA on survival [25, 26]. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T47 | 243-260 | Phenotype | denotes | air-crescent sign | http://purl.obolibrary.org/obo/HP_0032172 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32703771-22517788-29390908 | 287-289 | 22517788 | denotes | 24 |
| 32703771-30076119-29390909 | 332-334 | 30076119 | denotes | 13 |
| 32703771-32445626-29390910 | 1194-1195 | 32445626 | denotes | 9 |