PMC:7377212 / 11595-12037 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T29","span":{"begin":10,"end":26},"obj":"Body_part"},{"id":"T30","span":{"begin":103,"end":107},"obj":"Body_part"},{"id":"T31","span":{"begin":134,"end":140},"obj":"Body_part"},{"id":"T32","span":{"begin":348,"end":352},"obj":"Body_part"}],"attributes":[{"id":"A29","pred":"fma_id","subj":"T29","obj":"http://purl.org/sig/ont/fma/fma7333"},{"id":"A30","pred":"fma_id","subj":"T30","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A31","pred":"fma_id","subj":"T31","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A32","pred":"fma_id","subj":"T32","obj":"http://purl.org/sig/ont/fma/fma7195"}],"text":"ties with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp. 9 Proven Proven L-AmB Died\nSummary Median (IQR)70 (57–75) M: 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of "}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T27","span":{"begin":22,"end":26},"obj":"Body_part"},{"id":"T28","span":{"begin":103,"end":107},"obj":"Body_part"},{"id":"T29","span":{"begin":134,"end":140},"obj":"Body_part"},{"id":"T30","span":{"begin":348,"end":352},"obj":"Body_part"}],"attributes":[{"id":"A27","pred":"uberon_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/UBERON_3010752"},{"id":"A28","pred":"uberon_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A29","pred":"uberon_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A30","pred":"uberon_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"ties with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp. 9 Proven Proven L-AmB Died\nSummary Median (IQR)70 (57–75) M: 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of "}

{"project":"LitCovid-PubTator","denotations":[{"id":"298","span":{"begin":76,"end":88},"obj":"Species"},{"id":"299","span":{"begin":145,"end":156},"obj":"Species"},{"id":"307","span":{"begin":288,"end":295},"obj":"Chemical"},{"id":"368","span":{"begin":184,"end":188},"obj":"Disease"},{"id":"371","span":{"begin":348,"end":360},"obj":"Disease"}],"attributes":[{"id":"A298","pred":"tao:has_database_id","subj":"298","obj":"Tax:746128"},{"id":"A299","pred":"tao:has_database_id","subj":"299","obj":"Tax:746128"},{"id":"A307","pred":"tao:has_database_id","subj":"307","obj":"MESH:D013256"},{"id":"A368","pred":"tao:has_database_id","subj":"368","obj":"MESH:D003643"},{"id":"A371","pred":"tao:has_database_id","subj":"371","obj":"MESH:D008171"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"ties with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp. 9 Proven Proven L-AmB Died\nSummary Median (IQR)70 (57–75) M: 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of "}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T148","span":{"begin":318,"end":326},"obj":"Disease"},{"id":"T149","span":{"begin":348,"end":360},"obj":"Disease"}],"attributes":[{"id":"A148","pred":"mondo_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/MONDO_0005015"},{"id":"A149","pred":"mondo_id","subj":"T149","obj":"http://purl.obolibrary.org/obo/MONDO_0005275"}],"text":"ties with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp. 9 Proven Proven L-AmB Died\nSummary Median (IQR)70 (57–75) M: 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of "}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T108","span":{"begin":76,"end":77},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T109","span":{"begin":103,"end":107},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T110","span":{"begin":103,"end":107},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T111","span":{"begin":178,"end":183},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9940"},{"id":"T112","span":{"begin":312,"end":314},"obj":"http://purl.obolibrary.org/obo/CLO_0001382"},{"id":"T113","span":{"begin":348,"end":352},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T114","span":{"begin":348,"end":352},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T115","span":{"begin":367,"end":369},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T116","span":{"begin":394,"end":400},"obj":"http://purl.obolibrary.org/obo/UBERON_0002553"}],"text":"ties with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp. 9 Proven Proven L-AmB Died\nSummary Median (IQR)70 (57–75) M: 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of "}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T174","span":{"begin":89,"end":91},"obj":"Chemical"},{"id":"T175","span":{"begin":92,"end":94},"obj":"Chemical"},{"id":"T176","span":{"begin":123,"end":125},"obj":"Chemical"},{"id":"T179","span":{"begin":131,"end":133},"obj":"Chemical"},{"id":"T182","span":{"begin":288,"end":295},"obj":"Chemical"}],"attributes":[{"id":"A174","pred":"chebi_id","subj":"T174","obj":"http://purl.obolibrary.org/obo/CHEBI_145751"},{"id":"A175","pred":"chebi_id","subj":"T175","obj":"http://purl.obolibrary.org/obo/CHEBI_73419"},{"id":"A176","pred":"chebi_id","subj":"T176","obj":"http://purl.obolibrary.org/obo/CHEBI_141444"},{"id":"A177","pred":"chebi_id","subj":"T176","obj":"http://purl.obolibrary.org/obo/CHEBI_16410"},{"id":"A178","pred":"chebi_id","subj":"T176","obj":"http://purl.obolibrary.org/obo/CHEBI_53551"},{"id":"A179","pred":"chebi_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/CHEBI_141444"},{"id":"A180","pred":"chebi_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/CHEBI_16410"},{"id":"A181","pred":"chebi_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/CHEBI_53551"},{"id":"A182","pred":"chebi_id","subj":"T182","obj":"http://purl.obolibrary.org/obo/CHEBI_35341"}],"text":"ties with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp. 9 Proven Proven L-AmB Died\nSummary Median (IQR)70 (57–75) M: 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of "}

{"project":"LitCovid-sentences","denotations":[{"id":"T63","span":{"begin":162,"end":188},"obj":"Sentence"},{"id":"T64","span":{"begin":189,"end":222},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"ties with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp. 9 Proven Proven L-AmB Died\nSummary Median (IQR)70 (57–75) M: 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of "}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T39","span":{"begin":340,"end":360},"obj":"Phenotype"}],"attributes":[{"id":"A39","pred":"hp_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/HP_0006528"}],"text":"ties with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp. 9 Proven Proven L-AmB Died\nSummary Median (IQR)70 (57–75) M: 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of "}