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PMC:7377212 / 11431-12304 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T29 174-190 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T30 267-271 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T31 298-304 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T32 512-516 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T33 676-681 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T27 186-190 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T28 267-271 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T29 298-304 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T30 512-516 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T31 676-681 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
298 240-252 Species denotes A. fumigatus Tax:746128
299 309-320 Species denotes Aspergillus Tax:746128
300 0-12 Species denotes , pulmonary Tax:746128
307 452-459 Chemical denotes steroid MESH:D013256
364 2-20 Disease denotes pulmonary cysts ND MESH:C537849
365 24-36 Disease denotes flavus ND ND MESH:C537849
366 109-113 Disease denotes Died MESH:D003643
367 137-145 Disease denotes Diabetes MESH:D003920
368 348-352 Disease denotes Died MESH:D003643
371 512-524 Disease denotes lung disease MESH:D008171

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T146 72-74 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T147 137-145 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T148 482-490 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T149 512-524 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T106 21-22 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T107 128-130 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T108 240-241 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T109 267-271 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T110 267-271 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T111 342-347 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T112 476-478 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T113 512-516 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T114 512-516 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T115 531-533 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T116 558-564 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavity
T117 606-608 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T118 755-757 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T119 783-785 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T168 18-20 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T169 31-33 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T170 34-36 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T171 37-39 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T172 72-74 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T173 100-103 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T174 253-255 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T175 256-258 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T176 287-289 Chemical denotes PM http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551
T179 295-297 Chemical denotes PM http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551
T182 452-459 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T183 614-617 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T184 644-647 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T185 648-650 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T187 682-684 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T189 850-853 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T11 648-650 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T12 682-684 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T62 114-325 Sentence denotes Milan, Italy [22] 73 M Diabetes Interstitial opacities with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp.
T63 326-352 Sentence denotes 9 Proven Proven L-AmB Died
T64 353-386 Sentence denotes Summary Median (IQR)70 (57–75) M:
T65 387-849 Sentence denotes 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of 22 with BAL 14 (66.7%) out of 21 with BAL GM 6 (21.4%) out of 28 with serum GM Median (IQR)5.5 (4.3–9) Proven: n=5; probable: n=1; no host factor: n=27 Proven: n=5; putative: n=11; putative with caveats: n=17 24 (72.7%) treated 21 (63.6%) died

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T38 2-17 Phenotype denotes pulmonary cysts http://purl.obolibrary.org/obo/HP_0032445
T39 504-524 Phenotype denotes chronic lung disease http://purl.obolibrary.org/obo/HP_0006528