PMC:7377212 / 11431-12304
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T29 | 174-190 | Body_part | denotes | right upper lobe | http://purl.org/sig/ont/fma/fma7333 |
T30 | 267-271 | Body_part | denotes | Lung | http://purl.org/sig/ont/fma/fma7195 |
T31 | 298-304 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
T32 | 512-516 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T33 | 676-681 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T27 | 186-190 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
T28 | 267-271 | Body_part | denotes | Lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T29 | 298-304 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
T30 | 512-516 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T31 | 676-681 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
298 | 240-252 | Species | denotes | A. fumigatus | Tax:746128 |
299 | 309-320 | Species | denotes | Aspergillus | Tax:746128 |
300 | 0-12 | Species | denotes | , pulmonary | Tax:746128 |
307 | 452-459 | Chemical | denotes | steroid | MESH:D013256 |
364 | 2-20 | Disease | denotes | pulmonary cysts ND | MESH:C537849 |
365 | 24-36 | Disease | denotes | flavus ND ND | MESH:C537849 |
366 | 109-113 | Disease | denotes | Died | MESH:D003643 |
367 | 137-145 | Disease | denotes | Diabetes | MESH:D003920 |
368 | 348-352 | Disease | denotes | Died | MESH:D003643 |
371 | 512-524 | Disease | denotes | lung disease | MESH:D008171 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T146 | 72-74 | Disease | denotes | TA | http://purl.obolibrary.org/obo/MONDO_0017991 |
T147 | 137-145 | Disease | denotes | Diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
T148 | 482-490 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
T149 | 512-524 | Disease | denotes | lung disease | http://purl.obolibrary.org/obo/MONDO_0005275 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T106 | 21-22 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T107 | 128-130 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
T108 | 240-241 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T109 | 267-271 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | Lung |
T110 | 267-271 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | Lung |
T111 | 342-347 | http://purl.obolibrary.org/obo/NCBITaxon_9940 | denotes | L-AmB |
T112 | 476-478 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
T113 | 512-516 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T114 | 512-516 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T115 | 531-533 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
T116 | 558-564 | http://purl.obolibrary.org/obo/UBERON_0002553 | denotes | cavity |
T117 | 606-608 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
T118 | 755-757 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
T119 | 783-785 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T168 | 18-20 | Chemical | denotes | ND | http://purl.obolibrary.org/obo/CHEBI_73419 |
T169 | 31-33 | Chemical | denotes | ND | http://purl.obolibrary.org/obo/CHEBI_73419 |
T170 | 34-36 | Chemical | denotes | ND | http://purl.obolibrary.org/obo/CHEBI_73419 |
T171 | 37-39 | Chemical | denotes | NR | http://purl.obolibrary.org/obo/CHEBI_145751 |
T172 | 72-74 | Chemical | denotes | TA | http://purl.obolibrary.org/obo/CHEBI_74824 |
T173 | 100-103 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
T174 | 253-255 | Chemical | denotes | NR | http://purl.obolibrary.org/obo/CHEBI_145751 |
T175 | 256-258 | Chemical | denotes | ND | http://purl.obolibrary.org/obo/CHEBI_73419 |
T176 | 287-289 | Chemical | denotes | PM | http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551 |
T179 | 295-297 | Chemical | denotes | PM | http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551 |
T182 | 452-459 | Chemical | denotes | steroid | http://purl.obolibrary.org/obo/CHEBI_35341 |
T183 | 614-617 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
T184 | 644-647 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
T185 | 648-650 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
T187 | 682-684 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
T189 | 850-853 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
LitCovid-PD-GlycoEpitope
Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
---|---|---|---|---|---|
T11 | 648-650 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
T12 | 682-684 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T62 | 114-325 | Sentence | denotes | Milan, Italy [22] 73 M Diabetes Interstitial opacities with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp. |
T63 | 326-352 | Sentence | denotes | 9 Proven Proven L-AmB Died |
T64 | 353-386 | Sentence | denotes | Summary Median (IQR)70 (57–75) M: |
T65 | 387-849 | Sentence | denotes | 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of 22 with BAL 14 (66.7%) out of 21 with BAL GM 6 (21.4%) out of 28 with serum GM Median (IQR)5.5 (4.3–9) Proven: n=5; probable: n=1; no host factor: n=27 Proven: n=5; putative: n=11; putative with caveats: n=17 24 (72.7%) treated 21 (63.6%) died |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T38 | 2-17 | Phenotype | denotes | pulmonary cysts | http://purl.obolibrary.org/obo/HP_0032445 |
T39 | 504-524 | Phenotype | denotes | chronic lung disease | http://purl.obolibrary.org/obo/HP_0006528 |