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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T24 4-25 SP_7 denotes coronavirus disease 2
T25 30-38 SP_7 denotes COVID-19
T26 40-45 NCBITaxon:10239 denotes virus
T27 91-102 NCBITaxon:1 denotes individuals
T28 159-167 SP_7 denotes COVID-19
T29 194-205 UBERON:0001004 denotes respiratory
T30 244-249 NCBITaxon:10239 denotes viral
T31 344-355 GO:0015671 denotes oxygenation
T32 404-413 NCBITaxon:2 denotes bacterial
T33 448-471 UBERON:0001558 denotes lower respiratory tract
T34 472-477 NCBITaxon:10239 denotes viral
T35 550-558 SP_7 denotes COVID-19
T36 568-581 CHEBI:35718;CHEBI:35718 denotes antimicrobial
T37 616-622 NCBITaxon:4751 denotes fungal
T38 651-659 SP_7 denotes COVID-19
T39 671-680 UBERON:0002048 denotes pulmonary
T40 819-832 NCBITaxon:11118 denotes coronaviruses
T41 888-896 SP_10 denotes SARS-CoV
T42 946-954 SP_9 denotes -coronav
T43 987-995 SP_7 denotes COVID-19
T44 1053-1059 NCBITaxon:4751 denotes fungal
T45 1071-1089 NCBITaxon:5059 denotes Aspergillus flavus
T46 1112-1129 UBERON:0000065 denotes respiratory tract
T47 1169-1177 SP_7 denotes COVID-19
T48 1240-1251 NCBITaxon:5052 denotes Aspergillus
T49 1252-1256 NCBITaxon:species denotes spp.
T50 1730-1882 NCBITaxon:11118 denotes course of COVID-19 shows many features that are shared with severe influenza infection. These include ARDS, lymphopenia, bilateral pulmonary infiltrates
T51 18969-18978 UBERON:0002048 denotes pulmonary
T54 19008-19010 UBERON:0002048 denotes on
T56 19017-19018 SP_7 denotes o
T66 19067-19068 GO:0018995 denotes s
T69 19076-19077 UBERON:0002048 denotes A
T70 19080-19083 UBERON:0002048 denotes Ag:
T74 19099-19100 GO:0016265 denotes i
T84 19165-19166 CHEBI:10023;CHEBI:10023 denotes n
T94 19243-19244 SP_7 denotes -
T97 19257-19258 SP_7 denotes c
T99 19264-19265 SP_7 denotes o
T100 19265-19268 UBERON:0002048 denotes lar
T102 19277-19278 UBERON:0002048 denotes P
T163 19325-19341 CHEBI:35705;CHEBI:35705 denotes immunomodulatory
T164 19342-19347 CHEBI:23888;CHEBI:23888 denotes drugs
T165 19378-19393 PR:000001137 denotes interleukin-1Ra
T166 19396-19407 DG_35 denotes tocilizumab
T167 19414-19427 PR:000001393 denotes interleukin-6
T168 19446-19456 CHEBI:35222;CHEBI:35222 denotes inhibitors
T169 19490-19498 SP_7 denotes COVID-19
T170 19800-19809 UBERON:0002048 denotes pulmonary
T171 19928-19936 SP_7 denotes COVID-19
T172 19937-19946 UBERON:0002048 denotes pulmonary
T173 20029-20040 UBERON:0001004 denotes respiratory
T174 20074-20082 SP_7 denotes COVID-19
T175 20242-20250 SP_7 denotes COVID-19
T176 20300-20310 SP_7 denotes SARS-CoV-2
T177 20311-20316 NCBITaxon:10239 denotes virus
T178 20569-20577 SP_7 denotes COVID-19
T73730 30-38 SP_7 denotes COVID-19
T85102 40-45 NCBITaxon:10239 denotes virus
T81036 91-102 NCBITaxon:1 denotes individuals
T16805 159-167 SP_7 denotes COVID-19
T23436 194-205 UBERON:0001004 denotes respiratory
T90565 244-249 NCBITaxon:10239 denotes viral
T80972 344-355 GO:0015671 denotes oxygenation
T23433 404-413 NCBITaxon:2 denotes bacterial
T48068 448-471 UBERON:0001558 denotes lower respiratory tract
T57817 472-477 NCBITaxon:10239 denotes viral
T8958 550-558 SP_7 denotes COVID-19
T86360 568-581 CHEBI:35718;CHEBI:35718 denotes antimicrobial
T64802 616-622 NCBITaxon:4751 denotes fungal
T86299 651-659 SP_7 denotes COVID-19
T12819 671-680 UBERON:0002048 denotes pulmonary
T93865 819-832 NCBITaxon:11118 denotes coronaviruses
T46081 888-896 SP_10 denotes SARS-CoV
T14192 987-995 SP_7 denotes COVID-19
T76429 1053-1059 NCBITaxon:4751 denotes fungal
T22991 1071-1089 NCBITaxon:5059 denotes Aspergillus flavus
T30496 1112-1129 UBERON:0000065 denotes respiratory tract
T8992 1169-1177 SP_7 denotes COVID-19
T8991 1240-1251 NCBITaxon:5052 denotes Aspergillus
T96800 1252-1256 NCBITaxon:species denotes spp.
T50878 1581-1595 NCBITaxon:11118 denotes CAPA Influenza
T75354 1607-1616 UBERON:0002048 denotes pulmonary
T52 18969-18978 UBERON:0002048 denotes pulmonary
T62 20569-20577 SP_7 denotes COVID-19
T117 14103-14111 SP_7 denotes d handli
T118 14297-14305 SP_7 denotes for CAP
T119 14502-14512 SP_7 denotes acteristic
T120 14513-14518 NCBITaxon:10239 denotes CT fe
T121 14636-14641 UBERON:0001443 denotes they
T122 14654-14665 NCBITaxon:5052 denotes irmed to be
T123 14666-14673 CHEBI:59132;CHEBI:59132 denotes IPA [30
T124 14691-14696 UBERON:0001977 denotes of ty
T125 14708-14721 CHEBI:27680;CHEBI:27680 denotes ve aspergillo
T126 14764-14775 NCBITaxon:5052 denotes classical f
T127 14892-14900 SP_7 denotes and red
T128 15305-15311 GO:0016265 denotes tter w
T129 15313-15318 UBERON:0001977 denotes h 20
T130 15529-15534 UBERON:0001977 denotes serum
T131 15764-15769 UBERON:0001977 denotes . The
T132 15881-15886 UBERON:0001977 denotes agnos
T133 15931-15936 UBERON:0001977 denotes , pro
T134 16030-16044 UBERON:0007196 denotes erating proced
T135 16410-16415 UBERON:0001977 denotes CL3 l
T136 16555-16562 CHEBI:59132;CHEBI:59132 denotes test [2
T137 16740-16748 SP_7 denotes e [32].
T138 16758-16769 NCBITaxon:5052 denotes D-glucan (B
T139 16954-16959 CHEBI:68452;CHEBI:68452 denotes the d
T140 17012-17017 UBERON:0001977 denotes t be
T141 17144-17149 UBERON:0001977 denotes nts,
T142 17150-17161 NCBITaxon:5052 denotes nd performa
T143 17162-17169 CHEBI:59132;CHEBI:59132 denotes ce in C
T144 17407-17410 PR:Q8LFX7 denotes cop
T145 17620-17631 NCBITaxon:5052 denotes to utilise
T146 17632-17639 CHEBI:59132;CHEBI:59132 denotes ther mo
T147 18038-18052 UBERON:0001728 denotes ng only, and i
T148 18184-18196 UBERON:0001852 denotes gnostic algo
T149 18222-18225 SO:0000153 denotes cli
T150 18428-18438 UBERON:0001004 denotes ot yet und
T151 18482-18488 UBERON:0007311 denotes iteria
T152 18493-18501 UBERON:0003126 denotes proven o
T153 18645-18656 NCBITaxon:1 denotes ethasone is
T154 18832-18845 CHEBI:41879;CHEBI:41879 denotes tion between
T155 18918-18926 SP_7 denotes algorit
T156 19017-19031 CHEBI:50858;CHEBI:50858 denotes olar lavage; B
T157 19106-19114 SP_7 denotes F: antif
T158 19126-19135 UBERON:0002048 denotes nvasive a
T159 19170-19185 UBERON:0002186 denotes RTC: European O
T160 19221-19229 UBERON:0003126 denotes nt of Ca
T161 19251-19258 CHEBI:59132;CHEBI:59132 denotes d bronc
T162 19294-19301 CHEBI:59132;CHEBI:59132 denotes pneumo
T69247 19340-19355 CHEBI:35705;CHEBI:35705 denotes y drugs such as
T20303 19356-19361 CHEBI:23888;CHEBI:23888 denotes anaki
T81754 19392-19398 PR:000001137 denotes a), to
T16643 19401-19412 DG_35 denotes izumab (ant
T55627 19419-19422 PR:000001393 denotes leu
T41646 19447-19457 CHEBI:35222;CHEBI:35222 denotes nhibitors,
T67111 19491-19498 SP_7 denotes OVID-19
T31029 19800-19809 UBERON:0002048 denotes pulmonary
T56928 19928-19935 SP_7 denotes COVID-1
T40668 19936-19945 UBERON:0002048 denotes pulmonar
T57506 20028-20039 UBERON:0001004 denotes respirator
T68575 20073-20081 SP_7 denotes COVID-1
T57394 20242-20250 SP_7 denotes COVID-19
T22801 20300-20310 SP_7 denotes SARS-CoV-2
T51220 20311-20316 NCBITaxon:10239 denotes virus
T8651 20569-20577 SP_7 denotes COVID-19

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 448-471 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T4 1112-1129 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T5 1910-1918 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T6 1960-1965 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T7 3226-3230 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T8 3351-3355 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T9 3356-3360 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T10 4033-4038 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T11 4650-4658 Body_part denotes cavities http://purl.org/sig/ont/fma/fma76576
T12 5709-5714 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T13 5933-5938 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T14 6124-6129 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T15 6358-6363 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T16 6653-6658 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T17 6786-6791 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T18 7002-7006 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T19 7065-7070 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T20 7335-7340 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T21 7551-7556 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T22 7784-7789 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T23 8077-8082 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T24 8909-8912 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T25 9049-9054 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T26 9747-9753 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T27 9754-9767 Body_part denotes left bronchus http://purl.org/sig/ont/fma/fma7396
T28 10268-10276 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T29 10487-10503 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T30 10580-10584 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T31 10611-10617 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T32 10825-10829 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T33 10989-10994 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T34 11545-11549 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T35 11550-11554 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T36 12606-12611 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T37 13475-13480 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T38 13602-13608 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T39 14358-14363 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T40 14413-14418 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T41 15060-15065 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T42 15276-15281 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T43 15529-15534 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T44 15653-15658 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T45 15702-15707 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T46 16181-16186 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T47 16783-16788 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T48 16916-16921 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T49 18287-18293 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T50 19080-19082 Body_part denotes Ag http://purl.org/sig/ont/fma/fma61898
T51 19378-19389 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578
T52 19414-19427 Body_part denotes interleukin-6 http://purl.org/sig/ont/fma/fma264829

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 448-471 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T5 454-471 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T6 1112-1129 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T7 1960-1965 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T8 3226-3230 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 3356-3360 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 4033-4038 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T11 5709-5714 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T12 5933-5938 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 6124-6129 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T14 6358-6363 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T15 6653-6658 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T16 6786-6791 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T17 7002-7006 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T18 7065-7070 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T19 7335-7340 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T20 7551-7556 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T21 7784-7789 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T22 8077-8082 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T23 9049-9054 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T24 9747-9753 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T25 9759-9767 Body_part denotes bronchus http://purl.obolibrary.org/obo/UBERON_0002185
T26 10249-10266 Body_part denotes Pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T27 10499-10503 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T28 10580-10584 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T29 10611-10617 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T30 10825-10829 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T31 10989-10994 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T32 11550-11554 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T33 12606-12611 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T34 13475-13480 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T35 13602-13608 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T36 14358-14363 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T37 14413-14418 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T38 15060-15065 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T39 15276-15281 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T40 15529-15534 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T41 15653-15658 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T42 15702-15707 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T43 16181-16186 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T44 16783-16788 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T45 16916-16921 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T46 18287-18293 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
82 819-832 Species denotes coronaviruses Tax:11118
83 841-896 Species denotes severe acute respiratory syndrome-coronavirus (SARS-CoV Tax:694009
85 1071-1089 Species denotes Aspergillus flavus Tax:5059
86 1147-1155 Species denotes patients Tax:9606
87 1350-1358 Species denotes patients Tax:9606
88 1570-1578 Species denotes patients Tax:9606
89 1240-1251 Species denotes Aspergillus Tax:746128
90 729-743 Disease denotes Fungal disease MESH:D009181
91 760-782 Disease denotes invasive aspergillosis MESH:D055744
92 914-946 Disease denotes Middle East Respiratory Syndrome MESH:D018352
93 987-995 Disease denotes COVID-19 MESH:C000657245
94 1034-1069 Disease denotes secondary invasive fungal infection MESH:D060085
95 1169-1177 Disease denotes COVID-19 MESH:C000657245
98 1579-1595 Species denotes CAPA Influenza Tax:11118
99 1607-1630 Disease denotes pulmonary aspergillosis MESH:D055732
121 20555-20563 Species denotes patients Tax:9606
125 18969-18992 Disease denotes pulmonary aspergillosis MESH:D055732
133 20569-20577 Disease denotes COVID-19 MESH:C000657245
151 2848-2855 Species denotes patient Tax:9606
152 3499-3507 Species denotes patients Tax:9606
153 3603-3611 Species denotes patients Tax:9606
154 3700-3708 Species denotes patients Tax:9606
155 3179-3187 Disease denotes diabetes MESH:D003920
156 3226-3238 Disease denotes lung disease MESH:D008171
157 3240-3244 Disease denotes COPD MESH:D029424
158 3252-3258 Disease denotes asthma MESH:D001249
159 3274-3283 Disease denotes emphysema MESH:D004646
160 3291-3309 Disease denotes pulmonary fibrosis MESH:D011658
161 3356-3367 Disease denotes lung cancer MESH:D008175
162 3512-3516 Disease denotes died MESH:D003643
163 3550-3559 Disease denotes mortality MESH:D003643
164 3617-3625 Disease denotes COVID-19 MESH:C000657245
165 3713-3717 Disease denotes died MESH:D003643
269 4270-4282 Species denotes A. fumigatus Tax:746128
270 4307-4319 Species denotes A. fumigatus Tax:746128
271 4467-4479 Species denotes A. fumigatus Tax:746128
272 4682-4694 Species denotes A. fumigatus Tax:746128
273 4716-4728 Species denotes A. fumigatus Tax:746128
274 4922-4934 Species denotes A. fumigatus Tax:746128
275 4949-4961 Species denotes A. fumigatus Tax:746128
276 5356-5368 Species denotes A. fumigatus Tax:746128
277 5522-5534 Species denotes A. fumigatus Tax:746128
278 5641-5653 Species denotes A. fumigatus Tax:746128
279 5671-5683 Species denotes A. fumigatus Tax:746128
281 10286-10298 Species denotes ion, ground- Tax:746128
282 6685-6697 Species denotes Paris, Franc Tax:746128
283 6962-6974 Species denotes 1 days 6–10 Tax:746128
284 7229-7241 Species denotes –5, 10 mg·da Tax:746128
285 7451-7463 Species denotes y−1 days 1–5 Tax:746128
286 7697-7710 Species denotes ds Typical CO Tax:746128
287 8044-8056 Species denotes e bilateral Tax:746128
288 8334-8346 Species denotes e Died Antwe Tax:746128
289 8464-8476 Species denotes Antwerp, Bel Tax:746128
290 8591-8603 Species denotes erp, Belgium Tax:746128
291 8766-8780 Species denotes ids for pemphi Tax:746128
292 9106-9118 Species denotes AML with IPA Tax:746128
293 9267-9279 Species denotes rdiomyopathy Tax:746128
294 9533-9545 Species denotes ·day−1×2 day Tax:746128
295 9691-9703 Species denotes oderate COPD Tax:746128
296 9989-10001 Species denotes oids NR A. f Tax:746128
297 10110-10122 Species denotes ND A. fumig Tax:746128
298 10553-10565 Species denotes A. fumigatus Tax:746128
299 10622-10633 Species denotes Aspergillus Tax:746128
300 10313-10325 Species denotes , pulmonary Tax:746128
301 6995-7007 Species denotes mental lung Tax:746128
302 7266-7278 Species denotes VID-19”, emp Tax:746128
303 7484-7497 Species denotes 10 Typical CO Tax:746128
304 7725-7737 Species denotes ipheral nodu Tax:746128
305 7876-7883 Chemical denotes d Graz, MESH:D013256
306 9301-9308 Chemical denotes (-) 3 MESH:D013256
307 10765-10772 Chemical denotes steroid MESH:D013256
308 4176-4180 Disease denotes COPD MESH:D029424
309 4350-4354 Disease denotes Died MESH:D003643
310 4509-4513 Disease denotes Died MESH:D003643
311 4541-4549 Disease denotes Diabetes MESH:D003920
312 4810-4819 Disease denotes emphysema MESH:D004646
313 4828-4832 Disease denotes COPD MESH:D029424
314 4909-4921 Disease denotes emphysema ND MESH:C537849
315 5031-5035 Disease denotes Died MESH:D003643
316 5270-5288 Disease denotes Pulmonary fibrosis MESH:D011658
317 5307-5325 Disease denotes COVID-19 pneumonia MESH:C000657245
318 5419-5423 Disease denotes Died MESH:D003643
319 5473-5491 Disease denotes COVID-19 pneumonia MESH:C000657245
320 5581-5585 Disease denotes Died MESH:D003643
321 5610-5634 Disease denotes Myelodysplastic syndrome MESH:D009190
322 5797-5801 Disease denotes Died MESH:D003643
323 6982-6990 Disease denotes COVID-19 MESH:C000657245
326 10273-10281 Disease denotes lar cond MESH:C000657245
327 6412-6422 Disease denotes if TA con MESH:D003920
328 6486-6494 Disease denotes etes, de MESH:C000657245
329 6610-6614 Disease denotes 5 NR MESH:D003643
330 6675-6683 Disease denotes None Die MESH:C000657245
331 6852-6860 Disease denotes ture (+) MESH:D003920
332 6924-6932 Disease denotes methason MESH:C000657245
333 7208-7216 Disease denotes ne 20 mg MESH:C000657245
334 7219-7228 Disease denotes y−1 days MESH:D004646
335 7336-7340 Disease denotes erum MESH:D003643
336 7367-7377 Disease denotes host fact MESH:D003920
337 7441-7449 Disease denotes e 20 mg· MESH:C000657245
338 7595-7599 Disease denotes Put MESH:D003643
339 7628-7635 Disease denotes ) but B MESH:D009101
340 7661-7669 Disease denotes ance [9] MESH:C000657245
341 7828-7832 Disease denotes only MESH:D003643
342 7870-7874 Disease denotes ne D MESH:D029424
343 7893-7917 Disease denotes 20] 70 M Moderate COPD, MESH:D012893
344 7919-7927 Disease denotes eroid in MESH:D003920
345 8152-8156 Disease denotes or P MESH:D003643
346 8202-8211 Disease denotes L V Died MESH:C537849
347 8287-8291 Disease denotes ive MESH:D003643
348 8452-8460 Disease denotes V, I Al MESH:D003920
349 8543-8547 Disease denotes om b MESH:D003643
350 8579-8587 Disease denotes V Died MESH:D003920
351 8706-8714 Disease denotes ive Antw MESH:D003920
352 9049-9053 Disease denotes seru MESH:D003643
353 9085-9088 Disease denotes rp, MESH:D015470
354 9162-9166 Disease denotes st f MESH:D003643
355 9246-9260 Disease denotes ·day−1×28 days MESH:D009202
356 9411-9415 Disease denotes to MESH:D003643
357 9460-9464 Disease denotes [10 MESH:D029424
358 9478-9483 Disease denotes COPD, MESH:D002289
359 9632-9636 Disease denotes o BA MESH:D003643
360 9683-9687 Disease denotes ] 75 MESH:D029424
361 9808-9812 Disease denotes e V+ MESH:D003643
362 10057-10061 Disease denotes r L- MESH:D003643
363 10249-10266 Disease denotes Pleural effusions MESH:D010996
364 10315-10333 Disease denotes pulmonary cysts ND MESH:C537849
365 10337-10349 Disease denotes flavus ND ND MESH:C537849
366 10422-10426 Disease denotes Died MESH:D003643
367 10450-10458 Disease denotes Diabetes MESH:D003920
368 10661-10665 Disease denotes Died MESH:D003643
371 10825-10837 Disease denotes lung disease MESH:D008171
374 3834-3868 Disease denotes coronavirus disease 2019 (COVID-19 MESH:C000657245
375 3881-3904 Disease denotes pulmonary aspergillosis MESH:D055732
407 19125-19147 Disease denotes invasive aspergillosis MESH:D055744
411 19227-19233 Disease denotes Cancer MESH:D009369
415 11791-11798 Species denotes patient Tax:9606
416 11824-11835 Disease denotes neutropenia MESH:D009503
417 11852-11862 Disease denotes malignancy MESH:D009369
424 11168-11200 Disease denotes invasive pulmonary aspergillosis MESH:D055744
430 14702-14724 Disease denotes invasive aspergillosis MESH:D055744
431 18933-18952 Disease denotes coronavirus disease MESH:D018352
438 13994-14002 Species denotes patients Tax:9606
441 13979-13993 Disease denotes critically ill MESH:D016638
442 14008-14016 Disease denotes COVID-19 MESH:C000657245
474 12082-12090 Species denotes patients Tax:9606
475 13114-13122 Species denotes patients Tax:9606
476 13277-13285 Species denotes patients Tax:9606
477 13799-13807 Species denotes patients Tax:9606
478 12492-12503 Species denotes Aspergillus Tax:746128
479 13128-13139 Species denotes aspergillus Tax:746128
480 12584-12597 Chemical denotes galactomannan MESH:C012990
481 12599-12601 Chemical denotes GM MESH:C012990
482 12959-12976 Disease denotes tracheobronchitis
483 13813-13821 Disease denotes COVID-19 MESH:C000657245
489 14207-14217 Species denotes SARS-CoV-2 Tax:2697049
498 14626-14634 Species denotes patients Tax:9606
499 14376-14387 Species denotes Aspergillus Tax:746128
500 14469-14480 Species denotes aspergillus Tax:746128
503 14617-14625 Disease denotes COVID-19 MESH:C000657245
522 14986-14994 Species denotes patients Tax:9606
523 15156-15164 Species denotes patients Tax:9606
524 16466-16474 Species denotes patients Tax:9606
525 16530-16541 Species denotes Aspergillus Tax:746128
526 15066-15068 Chemical denotes GM MESH:C012990
527 15189-15191 Chemical denotes GM MESH:C012990
528 15282-15284 Chemical denotes GM MESH:C012990
529 15470-15472 Chemical denotes GM MESH:C012990
530 15535-15537 Chemical denotes GM MESH:C012990
531 15659-15661 Chemical denotes GM MESH:C012990
532 15708-15710 Chemical denotes GM MESH:C012990
533 15862-15864 Chemical denotes GM MESH:C012990
534 16065-16067 Chemical denotes GM MESH:C012990
535 16187-16189 Chemical denotes GM MESH:C012990
536 16394-16396 Chemical denotes GM MESH:C012990
537 16725-16730 Chemical denotes azole MESH:D001393
538 15973-15982 Disease denotes infection MESH:D007239
539 16512-16520 Disease denotes COVID-19 MESH:C000657245
551 17139-17147 Species denotes patients Tax:9606
552 17258-17265 Species denotes patient Tax:9606
553 16922-16933 Species denotes Aspergillus Tax:746128
554 17428-17439 Species denotes Aspergillus Tax:746128
555 16750-16766 Chemical denotes (1–3)-β-D-glucan MESH:C480180
556 16768-16771 Chemical denotes BDG
557 16992-16995 Chemical denotes BDG
558 17198-17201 Chemical denotes BDG
559 17533-17536 Chemical denotes BDG
560 17686-17689 Chemical denotes BDG
561 17034-17043 Disease denotes infection MESH:D007239
569 17827-17835 Species denotes patients Tax:9606
570 17953-17961 Species denotes patients Tax:9606
571 18705-18713 Species denotes patients Tax:9606
572 18275-18286 Species denotes aspergillus Tax:746128
573 18640-18653 Chemical denotes dexamethasone MESH:D003907
574 18512-18525 Disease denotes aspergillosis MESH:D001228
575 18726-18734 Disease denotes COVID-19 MESH:C000657245
581 19076-19095 Species denotes Asp Ag: aspergillus Tax:746128
582 19030-19051 Chemical denotes BDG: (1–3)-β-D-glucan
601 19378-19393 Gene denotes interleukin-1Ra Gene:3557
603 19520-19528 Species denotes patients Tax:9606
604 19598-19606 Species denotes patients Tax:9606
605 19885-19893 Species denotes patients Tax:9606
606 20000-20008 Species denotes patients Tax:9606
607 19573-19584 Species denotes Aspergillus Tax:746128
608 19396-19407 Chemical denotes tocilizumab MESH:C502936
609 19490-19498 Disease denotes COVID-19 MESH:C000657245
611 19853-19869 Disease denotes cavitary disease MESH:C566924
612 19928-19955 Disease denotes COVID-19 pulmonary fibrosis MESH:C000657245
613 20029-20049 Disease denotes respiratory problems MESH:D012818
614 20074-20082 Disease denotes COVID-19 MESH:C000657245
615 20083-20092 Disease denotes infection MESH:D007239
623 20251-20259 Species denotes patients Tax:9606
624 20300-20310 Species denotes SARS-CoV-2 Tax:2697049
626 20159-20176 Disease denotes Fungal infections MESH:D009181
627 20242-20250 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 4-28 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T27 30-38 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 159-167 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 188-223 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T30 194-223 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T31 225-229 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T32 250-261 Disease denotes pneumonitis http://purl.obolibrary.org/obo/MONDO_0043905
T33 417-426 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 472-487 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T35 478-487 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 550-558 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 626-635 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 651-659 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 681-694 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T40 696-700 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T41 760-782 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T42 769-782 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T43 841-874 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T44 888-896 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T45 987-995 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 1053-1069 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T47 1060-1069 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T48 1169-1177 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 1516-1520 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T50 1581-1585 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T51 1586-1595 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T52 1617-1630 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T53 1695-1704 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T54 1740-1748 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 1797-1816 Disease denotes influenza infection http://purl.obolibrary.org/obo/MONDO_0005812
T56 1807-1816 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T57 1832-1836 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T58 1838-1849 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T59 1951-1973 Disease denotes multiple organ failure http://purl.obolibrary.org/obo/MONDO_0043726
T60 2048-2056 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 2089-2111 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T62 2098-2111 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T63 2213-2221 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T64 2284-2288 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T65 2300-2322 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T66 2309-2322 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T67 2420-2428 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 2475-2479 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T69 2650-2658 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 2755-2759 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T71 2882-2886 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T72 3067-3073 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T73 3179-3187 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T74 3226-3238 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T75 3240-3244 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T76 3252-3258 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T77 3274-3283 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T78 3291-3309 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T79 3342-3367 Disease denotes nonsmall-cell lung cancer http://purl.obolibrary.org/obo/MONDO_0005233
T80 3356-3367 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T81 3361-3367 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T82 3375-3379 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T83 3617-3625 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T84 3834-3858 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T85 3860-3868 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 3891-3904 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T87 4015-4017 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T88 4176-4180 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T89 4541-4549 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T90 4810-4819 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T91 4828-4832 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T92 4909-4918 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T93 4942-4944 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T94 4997-4999 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T95 5195-5197 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T96 5270-5288 Disease denotes Pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T97 5307-5315 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 5316-5325 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T99 5473-5481 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 5482-5491 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T101 5610-5634 Disease denotes Myelodysplastic syndrome http://purl.obolibrary.org/obo/MONDO_0018881|http://purl.obolibrary.org/obo/MONDO_0044873
T103 5664-5666 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T104 5688-5690 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T105 5760-5762 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T106 5891-5899 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T107 6061-6069 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T108 6078-6086 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T109 6305-6313 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T110 6337-6339 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T111 6416-6418 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T112 6482-6490 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T113 6558-6566 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T114 6708-6714 Disease denotes Asthma http://purl.obolibrary.org/obo/MONDO_0004979
T115 6740-6748 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T116 6910-6918 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T117 6982-6990 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 7189-7195 Disease denotes Asthma http://purl.obolibrary.org/obo/MONDO_0004979
T119 7264-7272 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T120 7275-7284 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T121 7419-7427 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T122 7495-7503 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T123 7675-7682 Disease denotes Myeloma http://purl.obolibrary.org/obo/MONDO_0005170|http://purl.obolibrary.org/obo/MONDO_0009693
T125 7708-7716 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T126 7763-7765 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T127 7836-7838 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T128 7911-7915 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T129 7960-7968 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T130 8118-8120 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T131 8172-8174 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T132 8299-8301 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T133 8490-8498 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T134 8613-8621 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T135 8736-8744 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T136 8774-8783 Disease denotes pemphigus http://purl.obolibrary.org/obo/MONDO_0006594
T137 9106-9109 Disease denotes AML http://purl.obolibrary.org/obo/MONDO_0018874
T138 9265-9279 Disease denotes cardiomyopathy http://purl.obolibrary.org/obo/MONDO_0004994
T139 9387-9389 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T140 9478-9482 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T141 9496-9501 Disease denotes NSCLC http://purl.obolibrary.org/obo/MONDO_0005233
T142 9606-9608 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T143 9699-9703 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T144 9969-9975 Disease denotes Asthma http://purl.obolibrary.org/obo/MONDO_0004979
T145 10168-10170 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T146 10385-10387 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T147 10450-10458 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T148 10795-10803 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T149 10825-10837 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T150 11187-11200 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T151 11231-11233 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T152 11332-11338 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T153 11481-11484 Disease denotes AML http://purl.obolibrary.org/obo/MONDO_0018874
T154 11529-11534 Disease denotes NSCLC http://purl.obolibrary.org/obo/MONDO_0005233
T155 11536-11561 Disease denotes nonsmall-cell lung cancer http://purl.obolibrary.org/obo/MONDO_0005233
T156 11550-11561 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T157 11555-11561 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T158 11824-11835 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T159 12022-12035 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T160 12672-12676 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T161 12917-12939 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T162 12926-12939 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T163 12959-12976 Disease denotes tracheobronchitis http://purl.obolibrary.org/obo/MONDO_0021925
T164 13063-13067 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T165 13237-13241 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T166 13813-13821 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T167 13874-13878 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T168 13924-13928 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T169 14008-14016 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T170 14065-14069 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T171 14207-14215 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T172 14302-14306 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T173 14528-14550 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T174 14537-14550 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T175 14617-14625 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T176 14702-14724 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T177 14711-14724 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T178 14832-14836 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T179 15032-15036 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T180 15415-15419 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T181 15620-15624 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T182 15760-15764 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T183 15914-15918 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T184 15973-15982 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T185 16104-16108 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T186 16139-16143 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T187 16236-16240 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T188 16512-16520 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T189 17034-17043 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T190 17116-17138 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T191 17125-17138 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T192 17168-17172 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T193 17977-17981 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T194 18105-18109 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T195 18206-18210 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T196 18418-18422 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T197 18512-18525 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T198 18726-18734 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T199 18767-18789 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T200 18776-18789 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T201 18870-18874 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T202 18933-18957 Disease denotes coronavirus disease-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T203 18979-18992 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T204 18994-18998 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T205 19053-19055 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T206 19125-19147 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T207 19134-19147 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T208 19227-19233 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T209 19277-19280 Disease denotes PCP http://purl.obolibrary.org/obo/MONDO_0019121
T210 19282-19294 Disease denotes Pneumocystis http://purl.obolibrary.org/obo/MONDO_0019121
T211 19490-19498 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T212 19532-19536 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T213 19810-19823 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T214 19928-19936 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T215 19937-19955 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T216 20074-20082 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T217 20083-20092 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T218 20159-20176 Disease denotes Fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T219 20242-20250 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T220 20300-20308 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T221 20342-20346 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T222 20547-20551 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T223 20569-20577 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T224 20732-20736 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T225 20762-20770 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T10 40-45 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T11 53-54 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 335-343 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T13 430-431 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 448-471 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T15 502-503 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 783-786 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T17 904-908 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4, 5
T18 1294-1296 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T19 1309-1310 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1486-1488 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T21 1539-1541 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T22 1647-1648 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 1960-1965 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T24 2372-2375 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 2563-2564 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 2677-2678 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 3013-3014 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 3024-3036 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T29 3108-3110 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T30 3198-3200 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T31 3226-3230 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T32 3226-3230 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T33 3351-3355 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T34 3356-3360 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T35 3356-3360 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T36 3394-3395 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 3630-3631 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 4147-4149 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T39 4270-4271 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T40 4307-4308 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T41 4373-4375 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T42 4467-4468 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T43 4532-4534 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T44 4650-4658 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavities
T45 4682-4683 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T46 4716-4717 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T47 4785-4787 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T48 4922-4923 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T49 4949-4950 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T50 5054-5056 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T51 5261-5263 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T52 5356-5357 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T53 5413-5418 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T54 5441-5443 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T55 5522-5523 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T56 5575-5580 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T57 5641-5642 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T58 5671-5672 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T59 6087-6088 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T60 6317-6318 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T61 6344-6345 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T62 6700-6705 http://purl.obolibrary.org/obo/CLO_0001533 denotes 9] 43
T63 6749-6750 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T64 7002-7006 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T65 7002-7006 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T66 7019-7020 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T67 7051-7052 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T68 7285-7286 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T69 7321-7322 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T70 7504-7505 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T71 7537-7538 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T72 7743-7744 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T73 7770-7771 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T74 8077-8082 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T75 8098-8099 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T76 8248-8249 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T77 8376-8377 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T78 8482-8487 http://purl.obolibrary.org/obo/CLO_0050053 denotes 8] 62
T79 8502-8503 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T80 8625-8626 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T81 8798-8799 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 8914-8917 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T83 9098-9103 http://purl.obolibrary.org/obo/CLO_0050040 denotes 8] 75
T84 9127-9128 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T85 9286-9287 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 9299-9307 http://purl.obolibrary.org/obo/CLO_0008143 denotes ND (-) 3
T87 9421-9422 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T88 9427-9432 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T89 9553-9554 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T90 9569-9573 http://purl.obolibrary.org/obo/CLO_0008143 denotes ND 3
T91 9640-9641 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T92 9646-9651 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T93 9707-9708 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T94 9759-9767 http://purl.obolibrary.org/obo/UBERON_0002185 denotes bronchus
T95 9812-9813 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T96 9818-9823 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T97 9918-9919 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T98 9924-9929 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T99 9997-9998 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T100 10053-10054 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T101 10059-10064 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T102 10114-10115 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T103 10202-10203 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T104 10208-10213 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T105 10249-10266 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusions
T106 10334-10335 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T107 10441-10443 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T108 10553-10554 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T109 10580-10584 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T110 10580-10584 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T111 10655-10660 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T112 10789-10791 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T113 10825-10829 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T114 10825-10829 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T115 10844-10846 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T116 10871-10877 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavity
T117 10919-10921 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T118 11068-11070 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T119 11096-11098 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T120 11289-11301 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T121 11386-11390 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T122 11386-11390 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T123 11395-11401 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T124 11456-11462 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T125 11545-11549 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T126 11550-11554 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T127 11550-11554 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T128 11616-11621 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T129 11646-11647 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T130 11665-11666 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T131 11789-11790 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 11992-11993 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 12524-12525 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 12703-12705 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T135 12837-12838 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 13263-13265 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T137 13353-13354 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T138 13473-13474 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 13592-13593 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 14218-14223 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T141 14274-14276 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T142 14321-14322 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T143 14358-14363 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T144 14396-14401 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T145 14454-14459 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T146 14968-14969 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T147 15285-15292 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T148 15477-15478 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 15711-15715 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T150 16050-16051 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T151 16170-16171 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T152 16245-16246 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T153 16335-16340 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T154 16355-16356 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T155 16410-16413 http://purl.obolibrary.org/obo/CLO_0002489 denotes CL3
T156 16555-16559 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T157 16649-16656 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T158 16748-16749 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T159 16773-16777 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T160 16781-16782 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 16835-16839 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T162 16854-16855 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T163 16942-16949 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T164 17050-17051 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T165 17086-17087 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T166 17230-17231 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T167 17298-17303 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T168 17344-17345 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T169 17416-17423 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T170 17467-17469 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T171 17662-17667 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T172 17931-17933 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T173 18165-18166 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T174 18218-18221 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T175 18591-18593 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T176 19184-19196 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T177 19414-19427 http://purl.obolibrary.org/obo/PR_000001393 denotes interleukin-6
T178 19843-19844 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T179 19873-19874 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 20311-20316 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T181 20579-20580 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 568-581 Chemical denotes antimicrobial http://purl.obolibrary.org/obo/CHEBI_33281
T3 2329-2343 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T4 2608-2621 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T5 3149-3164 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T6 3976-3979 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T8 4003-4006 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T9 4015-4017 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T10 4026-4029 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T11 4030-4032 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T13 4039-4041 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T15 4190-4198 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T16 4283-4285 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T17 4299-4302 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T18 4320-4322 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T19 4439-4441 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T20 4459-4462 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T21 4480-4482 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T22 4708-4711 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T23 4729-4731 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T24 4842-4850 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T25 4919-4921 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T26 4935-4937 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T27 4942-4944 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T28 4962-4964 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T29 4997-4999 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T30 5025-5028 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T31 5172-5174 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T32 5179-5181 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T33 5195-5197 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T34 5206-5208 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T35 5352-5355 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T37 5369-5371 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T38 5518-5521 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T40 5535-5537 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T41 5635-5637 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T42 5638-5640 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T43 5654-5656 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T44 5664-5666 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T45 5688-5690 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T46 5691-5693 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T48 5760-5762 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T49 5788-5791 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T50 5825-5838 Chemical denotes Dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T51 5904-5906 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T52 5920-5923 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T53 5961-5963 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T54 5996-5999 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T55 6000-6002 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T57 6100-6102 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T58 6111-6114 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T59 6138-6140 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T60 6174-6177 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T61 6194-6197 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T62 6198-6200 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T64 6239-6252 Chemical denotes Dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T65 6314-6316 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T66 6330-6332 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T67 6337-6339 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T68 6381-6383 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T69 6416-6418 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T70 6444-6447 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T71 6492-6505 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T72 6571-6573 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T73 6587-6590 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T74 6612-6614 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T75 6659-6661 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T77 6716-6731 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T78 6762-6764 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T79 6773-6776 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T80 6809-6811 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T81 6845-6848 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T82 6865-6868 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T83 6869-6871 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T85 6920-6933 Chemical denotes Dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T86 7032-7034 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T87 7043-7046 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T88 7088-7090 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T89 7124-7127 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T90 7144-7147 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T91 7148-7150 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T93 7197-7210 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T94 7298-7300 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T95 7313-7316 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T96 7362-7364 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T97 7429-7442 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T98 7517-7519 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T99 7528-7531 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T100 7578-7580 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T101 7614-7617 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T102 7634-7637 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T103 7638-7640 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T105 7684-7699 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T106 7740-7742 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T107 7756-7758 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T108 7763-7765 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T109 7807-7809 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T110 7836-7838 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T111 7864-7867 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T112 7917-7924 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T113 8095-8097 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T114 8111-8113 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T115 8118-8120 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T116 8121-8124 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T117 8172-8174 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T118 8200-8203 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T119 8242-8244 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T120 8245-8247 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T121 8258-8260 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T122 8299-8301 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T123 8327-8330 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T124 8389-8391 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T125 8499-8501 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T126 8515-8517 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T127 8622-8624 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T128 8638-8640 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T129 8754-8769 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T130 8795-8797 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T131 8811-8813 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T132 8954-8956 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T133 8961-8963 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T134 9055-9057 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T136 9115-9118 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T138 9124-9126 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T139 9140-9142 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T140 9152-9154 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T141 9280-9282 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T142 9283-9285 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T143 9299-9301 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T144 9320-9327 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T145 9387-9389 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T146 9415-9418 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T147 9508-9520 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T148 9547-9549 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T149 9550-9552 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T150 9566-9568 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T151 9569-9571 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T152 9606-9608 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T153 9634-9637 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T154 9704-9706 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T155 9720-9722 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T156 9731-9733 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T157 9867-9869 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T158 9874-9876 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T159 9985-9993 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T160 9994-9996 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T161 10010-10012 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T162 10108-10110 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T163 10111-10113 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T164 10127-10129 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T165 10130-10132 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T166 10168-10170 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T167 10196-10199 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T168 10331-10333 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T169 10344-10346 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T170 10347-10349 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T171 10350-10352 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T172 10385-10387 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T173 10413-10416 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T174 10566-10568 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T175 10569-10571 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T176 10600-10602 Chemical denotes PM http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551
T179 10608-10610 Chemical denotes PM http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551
T182 10765-10772 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T183 10927-10930 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T184 10957-10960 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T185 10961-10963 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T187 10995-10997 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T189 11163-11166 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T191 11202-11205 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T192 11231-11233 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T193 11254-11256 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T195 11258-11271 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T196 11378-11381 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T198 11386-11390 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T199 11418-11424 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T200 11426-11429 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T201 11464-11466 Chemical denotes PM http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551
T204 11563-11565 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T205 11584-11596 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T206 11601-11614 Chemical denotes isavuconazole http://purl.obolibrary.org/obo/CHEBI_85979
T207 11633-11647 Chemical denotes amphotericin B http://purl.obolibrary.org/obo/CHEBI_2682
T208 11652-11663 Chemical denotes caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T209 11668-11681 Chemical denotes anidulafungin http://purl.obolibrary.org/obo/CHEBI_55346
T210 11683-11685 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T211 11785-11788 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T213 11918-11933 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T214 12559-12562 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T215 12584-12597 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T216 12599-12601 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T218 12612-12615 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T219 12870-12873 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T220 13300-13303 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T221 13355-13358 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T222 13359-13361 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T224 13447-13450 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T225 13481-13483 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T227 13531-13534 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T228 13560-13563 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T229 13564-13566 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T231 13673-13684 Chemical denotes antifungals http://purl.obolibrary.org/obo/CHEBI_35718
T232 14388-14395 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T233 14405-14408 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T234 14429-14431 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T236 14666-14669 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T238 15043-15046 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T240 15066-15068 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T242 15185-15188 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T243 15189-15191 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T245 15282-15284 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T247 15358-15361 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T248 15362-15364 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T250 15454-15457 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T251 15470-15472 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T253 15535-15537 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T255 15659-15661 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T257 15708-15710 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T259 15833-15836 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T260 15862-15864 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T262 15890-15894 Chemical denotes gold http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050
T264 16061-16064 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T265 16065-16067 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T267 16187-16189 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T269 16327-16334 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T270 16394-16396 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T272 16624-16635 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T273 16725-16730 Chemical denotes azole http://purl.obolibrary.org/obo/CHEBI_68452
T274 16760-16766 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T275 16869-16872 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T277 16934-16941 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T278 16971-16974 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T280 17440-17447 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T281 17489-17499 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T282 17885-17888 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T283 18028-18031 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T284 18640-18653 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T285 18845-18859 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T286 19001-19004 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T287 19045-19051 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T288 19053-19055 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T289 19076-19079 Chemical denotes Asp http://purl.obolibrary.org/obo/CHEBI_17053|http://purl.obolibrary.org/obo/CHEBI_22660|http://purl.obolibrary.org/obo/CHEBI_29958
T292 19080-19082 Chemical denotes Ag http://purl.obolibrary.org/obo/CHEBI_30512|http://purl.obolibrary.org/obo/CHEBI_9141
T294 19096-19103 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T295 19105-19107 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807
T296 19109-19119 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T297 19121-19123 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T298 19149-19151 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T300 19153-19166 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T301 19277-19280 Chemical denotes PCP http://purl.obolibrary.org/obo/CHEBI_17642|http://purl.obolibrary.org/obo/CHEBI_8058
T303 19342-19347 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T304 19396-19407 Chemical denotes tocilizumab http://purl.obolibrary.org/obo/CHEBI_64360
T305 19446-19456 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222

MyTest

Id Subject Object Predicate Lexical cue
32703771-22895826-29390903 1706-1708 22895826 denotes 12
32703771-30076119-29390903 1706-1708 30076119 denotes 12
32703771-28387526-29390903 1706-1708 28387526 denotes 12
32703771-28387526-29390904 1975-1977 28387526 denotes 14
32703771-27704024-29390905 1979-1981 27704024 denotes 15
32703771-12890854-29390906 2349-2350 12890854 denotes 5
32703771-32171076-29390907 2430-2431 32171076 denotes 1
32703771-22517788-29390908 12300-12302 22517788 denotes 24
32703771-30076119-29390909 12345-12347 30076119 denotes 13
32703771-32445626-29390910 13207-13208 32445626 denotes 9
32703771-28680526-29390911 14461-14463 28680526 denotes 28
32703771-32130038-29390912 14671-14673 32130038 denotes 30
32703771-17885264-29390913 15167-15169 17885264 denotes 31
32703771-30076119-29390914 15272-15274 30076119 denotes 13
32703771-32488446-29390915 15682-15683 32488446 denotes 8
32703771-17885264-29390916 16165-16167 17885264 denotes 31
32703771-28680526-29390917 16522-16524 28680526 denotes 28
32703771-19926038-29390918 16743-16745 19926038 denotes 32
32703771-27475024-29390919 16987-16989 27475024 denotes 33
32703771-21880959-29390920 17467-17469 21880959 denotes 34
32703771-30076119-29390921 18527-18529 30076119 denotes 13
32703771-28387526-29390922 18531-18533 28387526 denotes 14
32703771-27365388-29390923 18591-18593 27365388 denotes 36
32703771-29544767-29390924 18595-18597 29544767 denotes 37

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 472-487 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T3 7946-7951 http://purl.obolibrary.org/obo/GO_0030431 denotes sleep
T4 19439-19456 http://purl.obolibrary.org/obo/GO_0033673 denotes kinase inhibitors

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 4030-4032 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T2 4039-4041 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T3 5691-5693 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T4 6000-6002 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T5 6198-6200 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T6 6659-6661 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T7 6869-6871 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T8 7148-7150 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T9 7638-7640 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T10 9055-9057 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T11 10961-10963 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T12 10995-10997 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T13 11254-11256 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T14 11258-11271 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T15 12584-12597 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T16 12599-12601 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T17 13359-13361 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T18 13481-13483 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T19 13564-13566 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T20 14429-14431 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T21 15066-15068 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T22 15189-15191 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T23 15282-15284 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T24 15362-15364 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T25 15470-15472 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T26 15535-15537 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T27 15659-15661 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T28 15708-15710 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T29 15862-15864 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T30 16065-16067 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T31 16187-16189 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T32 16394-16396 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T33 19149-19151 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T34 19153-19166 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T8 0-151 Sentence denotes The coronavirus disease 2019 (COVID-19) virus caused a wide spectrum of disease in healthy individuals, as well as those with common comorbidities [1].
T9 152-360 Sentence denotes Severe COVID-19 is characterised by acute respiratory distress syndrome (ARDS) secondary to viral pneumonitis, treatment of which may require mechanical ventilation or extracorporeal membrane oxygenation [2].
T10 361-594 Sentence denotes Clinicians are alert to the possibility of bacterial co-infection as a complication of lower respiratory tract viral infection; for example, a recent review found that 72% of patients with COVID-19 received antimicrobial therapy [3].
T11 595-728 Sentence denotes However, the risk of fungal co-infection, in particular COVID-19 associated pulmonary aspergillosis (CAPA), remains underappreciated.
T12 729-963 Sentence denotes Fungal disease consistent with invasive aspergillosis has been observed with other severe coronaviruses such as severe acute respiratory syndrome-coronavirus (SARS-CoV) 2003 [4, 5] and Middle East Respiratory Syndrome-coronavirus [6].
T13 964-1070 Sentence denotes From the outset of the COVID-19 pandemic, there were warning signs of secondary invasive fungal infection.
T14 1071-1380 Sentence denotes Aspergillus flavus was isolated from the respiratory tract in one out of 99 patients in the first COVID-19 cohort from Wuhan, China to be reported in any detail [2] and Aspergillus spp. were isolated from two (3.8%) out of 52 patients in a subsequent cohort of critically unwell patients from this region [7].
T15 1381-1579 Sentence denotes More recently, retrospective case series from Belgium [8], France [9], The Netherlands [10] and Germany [11] have reported evidence of CAPA in an alarming 20–35% of mechanically ventilated patients.
T16 1581-1585 Sentence denotes CAPA
T17 1586-1817 Sentence denotes Influenza-associated pulmonary aspergillosis (IAPA) presents a known risk to critically unwell patients with influenza [12–14] and the clinical course of COVID-19 shows many features that are shared with severe influenza infection.
T18 1818-1983 Sentence denotes These include ARDS, lymphopenia, bilateral pulmonary infiltrates, systemic pro-inflammatory cytokine responses and sepsis leading to multiple organ failure [14, 15].
T19 1984-2112 Sentence denotes It is therefore reasonable to suspect that patients with severe COVID-19 may be similarly susceptible to invasive aspergillosis.
T20 2113-2352 Sentence denotes Corticosteroid use is an important acquired immunological risk factor for IAPA [16] and, during the SARS-CoV 2003 epidemic, there were case reports of patients developing SARS-associated invasive aspergillosis after corticosteroid use [5].
T21 2353-2480 Sentence denotes Corticosteroid use has been reported in hospitalised patients with COVID-19 [1] and may further contribute to the risk of CAPA.
T22 2481-2817 Sentence denotes Importantly, the recent finding by the UK RECOVERY trial (ISRCTN50189673) [17] of a one-third mortality reduction conferred by dexamethasone in ventilated patients with COVID-19, while leading to a crucial new therapeutic avenue, may increase the risk of patients acquiring CAPA and emphasises the need for enhanced fungal surveillance.
T23 2818-2919 Sentence denotes Table 1 summarises individual patient-level data in 33 cases of CAPA that have been reported to date.
T24 2920-3094 Sentence denotes The median (interquartile range) age of cases is 70 (57–75) years, of whom only two (6%) had a European Organization for Research and Treatment of Cancer (EORTC) host factor.
T25 3095-3374 Sentence denotes Of these 16 (48%) had exposure to inhaled or systemic corticosteroids, 10 (30%) had diabetes and nine (27%) had underlying chronic lung disease; COPD (n=5), asthma (n=3), bullous emphysema (n=1), pulmonary fibrosis (n=1) and post-radiotherapy for nonsmall-cell lung cancer (n=1).
T26 3375-3544 Sentence denotes CAPA was diagnosed a median (interquartile range) 5.5 (4.3–9) days after intensive care unit (ICU) admission and 21 (63.6%) patients had died by the time of publication.
T27 3545-3796 Sentence denotes This mortality is in excess of most cohorts of ventilated patients with COVID-19, as a comparison in the UK ISARIC cohort 618 (37%) out of 1658 ventilated patients had died by the time of publication (17% discharged and 46% still receiving care) [23].
T28 3797-3945 Sentence denotes TABLE 1 Summary of reported cases of coronavirus disease 2019 (COVID-19) associated pulmonary aspergillosis in the intensive care unit (ICU) setting
T29 3946-4128 Sentence denotes Location [ref.] Age years Sex IPA risk factors Radiology BAL culture TA culture BAL GM Serum GM Other diagnostics Onset days post-ICU EORTC status Mod AspICU status Treatment Outcome
T30 4129-4354 Sentence denotes Cologne, Germany [11] 62 F Ex-smoker, moderate COPD, inhaled steroids Ground-glass opacities, crazy paving, peripheral nodular consolidation A. fumigatus NR (+) >2.5 (-) BAL PCR A. fumigatus NR No host factor# Putative V Died
T31 4355-4513 Sentence denotes Cologne, Germany [11] 70 M Ex-smoker Ground-glass opacities, occasional nodules (-) NR (+) >2.5 (+) 0.7 BAL PCR A. fumigatus NR No host factor Putative I Died
T32 4514-4766 Sentence denotes Cologne, Germany [11] 54 M Diabetes, systemic corticosteroids0.4 mg·kg−1·day−1×13 days Ground-glass opacities, nodular infiltrates with cavities, air crescent sign (-) A. fumigatus (+) >2.5 (-) BAL PCR A. fumigatus NR No host factor Putative C, V Alive
T33 4767-5035 Sentence denotes Cologne, Germany [11] 73 M Smoker, bullous emphysema, severe COPD, inhaled steroids Ground-glass opacities, occasional nodules, known bullous emphysema ND A. fumigatus ND (-) TA PCR A. fumigatus NR No host factor Putative only if TA considered equivalent to BAL V Died
T34 5036-5243 Sentence denotes Cologne, Germany [11] 54 F None Ground-glass opacities, crazy paving, central and peripheral consolidation, smaller nodular infiltrates ND (-) ND (+) 2.7, 1.3 TA PCR (-) NR No host factor Putative C, V Alive
T35 5244-5423 Sentence denotes Munich, Germany [18] 80 M Pulmonary fibrosis Typical signs for COVID-19 pneumonia but no specific signs for IPA A. fumigatus NR (+) >6 (+) 1.5 5 No host factor Putative L-AmB Died
T36 5424-5585 Sentence denotes Munich, Germany [18] 70 M None Typical signs for COVID-19 pneumonia but no specific signs for IPA A. fumigatus NR (+) >6 (-) 6 No host factor Putative L-AmB Died
T37 5586-5801 Sentence denotes Paris, France [19] 74 M Myelodysplastic syndrome NR ND A. fumigatus ND (-) x2 TA PCR A. fumigatus x2, TA GM (-)×1, BDG and serum PCR (-) x2 4 No host factor Putative only if TA considered equivalent to BAL None Died
T38 5802-6037 Sentence denotes Paris, France [9] 53 M Dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 Typical COVID-19 (-) NR (-) 0.89 (-) BAL PCR (-), Serum PCR (-), BDG (+) >500 NR No host factor Putative only if BAL GM cut-off lowered to >0.8 None Alive
T39 6038-6215 Sentence denotes Paris, France [9] 59 F Diabetes Typical COVID-19 A. fumigatus NR (-) (-) BAL PCR (-), serum PCR (-) NR No host factor Putative but note BAL culture (+) but BAL GM (-) None Alive
T40 6216-6458 Sentence denotes Paris, France [9] 69 F Dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 Typical COVID-19 ND A. fumigatus ND (-) TA PCR A. fumigatus, serum PCR (-), BDG (-) NR No host factor Putative only if TA considered equivalent to BAL None Alive
T41 6459-6684 Sentence denotes Paris, France [9] 63 F Diabetes, dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 Typical COVID-19 (-) NR (-) (+) 0.51 BAL PCR (-), BDG (+) 105 NR No host factor Putative but relies on serum GM of only 0.51 None Died
T42 6685-6886 Sentence denotes Paris, France [9] 43 M Asthma, corticosteroids Typical COVID-19 A. fumigatus NR (-) (-) BAL PCR (-), serum PCR (-), BDG (-) NR No host factor Putative but note BAL culture (+) but BAL GM (-) None Alive
T43 6887-7165 Sentence denotes Paris, France [9] 79 M Diabetes, Dexamethasone 20 mg·d−1 days 1–5, 10 mg·d−1 days 6–10 Typical COVID-19, segmental lung atelectasis A. fumigatus NR (-) (-) BAL PCR A. fumigatus, serum PCR (-), BDG (-) NR No host factor Putative but note BAL culture (+) but BAL GM (-) None Alive
T44 7166-7395 Sentence denotes Paris, France [9] 77 M Asthma, dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 “Typical COVID-19”, emphysema A. fumigatus NR (+) 3.9 (-) BAL PCR A. fumigatus, serum PCR (-), BDG (+) 135 NR No host factor Putative V Died
T45 7396-7651 Sentence denotes Paris, France [9] 75 F Diabetes, dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 Typical COVID-19 A. fumigatus NR (-) (-) BAL PCR, A. fumigatus, serum PCR (-), BDG (+) 450 NR No host factor Putative but note BAL culture (+) but BAL GM (-) C Died
T46 7652-7877 Sentence denotes Paris, France [9] 47 M Myeloma, corticosteroids Typical COVID-19, one peripheral nodule ND A. fumigatus ND (-) TA PCR A. fumigatus, serum PCR (-), BDG (-) NR Probable Putative only if TA considered equivalent to BAL None Died
T47 7878-8210 Sentence denotes Graz, Austria [20] 70 M Moderate COPD, steroid inhaler, obstructive sleep apnoea, diabetes Ground-glass opacities, crazy paving, reversed halo sign, progression of the bilateral infiltrates on day 2 chest radiography ND A. fumigatus ND (-) TA LFD (+), BDG (-) 3 No host factor Putative only if TA considered equivalent to BAL V Died
T48 8211-8340 Sentence denotes Antwerp, Belgium [8] 86 M None ND ND A. flavus ND (-) 9 No host factor Putative only if TA considered equivalent to BAL None Died
T49 8341-8463 Sentence denotes Antwerp, Belgium [8] 38 M None (+) A. fumigatus NR (+) >2.8 (-) Histology from bronchoscopy (+) 6 Proven Proven V, I Alive
T50 8464-8586 Sentence denotes Antwerp, Belgium [8] 62 M Diabetes ND A. fumigatus NR (+) >2.0 (-) Histology from bronchoscopy (+) 16 Proven Proven V Died
T51 8587-8709 Sentence denotes Antwerp, Belgium [8] 73 M Diabetes ND A. fumigatus NR (+) >2.8 (-) Histology from bronchoscopy (+) 5 Proven Proven V Alive
T52 8710-8882 Sentence denotes Antwerp, Belgium [8] 77 M Diabetes, chronic corticosteroids for pemphigus foliaceous ND A. fumigatus NR (+) 2.79 (-) Histology from bronchoscopy (+) 2 Proven Proven V Alive
T53 8883-9079 Sentence denotes Antwerp, Belgium [8] 55 M HIV (CD4 count >250, viral load <20) copies) ND (-) NR (-) (+) 0.8 Histology from bronchoscopy (-) 13 No host factor Putative but relies on serum GM of only 0.8 V, I Died
T54 9080-9187 Sentence denotes Antwerp, Belgium [8] 75 M AML with IPA 2012 ND A. fumigatus NR (+) 2.63 ND 8 No host factor Putative V Died
T55 9188-9437 Sentence denotes Breda, The Netherlands [10] 83 M Prednisolone 0.13 mg·kg−1·day−1×28 days for cardiomyopathy NR ND A. fumigatus ND (-) 3 Probable if steroid requirement reduced to <0.3 mg·kg−1·day−1 Putative only if TA considered equivalent to BAL V+A, or L-AmB Died
T56 9438-9656 Sentence denotes Breda, The Netherlands [10] 67 M Severe COPD, Post RT for NSCLC 2014, prednisolone 0.37 mg·kg−1·day−1×2 days NR ND A. fumigatus ND ND 3 No host factor Putative only if TA considered equivalent to BAL V+A, or L-AmB Died
T57 9657-9828 Sentence denotes Breda, The Netherlands [10] 75 M Moderate COPD NR A. fumigatus NR (+) 4.0 ND Mucoid white sputum left bronchus at bronchoscopy 5 No host factor Putative V+A, or L-AmB Died
T58 9829-9935 Sentence denotes Breda, The Netherlands [10] 43 M None NR (-) NR (+) 3.8 (-) 14 No host factor Putative V+A, or L-AmB Alive
T59 9936-10069 Sentence denotes Breda, The Netherlands [10] 57 M Asthma, inhaled steroids NR A. fumigatus NR (+) 1.6 (-) 5 No host factor Putative V+A, or L-AmB Died
T60 10070-10219 Sentence denotes Breda, The Netherlands [10] 58 M None NR ND A. fumigatus ND ND 28 No host factor Putative only if TA considered equivalent to BAL V+A, or L-AmB Alive
T61 10220-10426 Sentence denotes Paris, France [21] 80 M None Pleural effusions, alveolar condensation, ground-glass opacities, pulmonary cysts ND A. flavus ND ND NR No host factor Putative only if TA considered equivalent to BAL V, I Died
T62 10427-10638 Sentence denotes Milan, Italy [22] 73 M Diabetes Interstitial opacities with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp.
T63 10639-10665 Sentence denotes 9 Proven Proven L-AmB Died
T64 10666-10699 Sentence denotes Summary Median (IQR)70 (57–75) M:
T65 10700-11162 Sentence denotes 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of 22 with BAL 14 (66.7%) out of 21 with BAL GM 6 (21.4%) out of 28 with serum GM Median (IQR)5.5 (4.3–9) Proven: n=5; probable: n=1; no host factor: n=27 Proven: n=5; putative: n=11; putative with caveats: n=17 24 (72.7%) treated 21 (63.6%) died
T66 11163-11279 Sentence denotes IPA: invasive pulmonary aspergillosis; BAL: bronchoalveolar lavage; TA: tracheal aspirate; GM: galactomannan; EORTC:
T67 11280-11430 Sentence denotes European Organization for Research and Treatment of Cancer; AspICU: clinical criteria to diagnose IPA; M: male; F: female; BDG: (1–3)-β-D-glucan; LFD:
T68 11431-12304 Sentence denotes Aspergillus lateral-flow device; PM: post mortem; AML: acute myeloid leukaemia; RT: radiotherapy; NSCLC: nonsmall-cell lung cancer; NR: not recorded; V: voriconazole; I: isavuconazole; L-AmB: liposomal amphotericin B; C: caspofungin; A: anidulafungin; ND: no data; (+): positive result; (-): negative result. #: without histological evidence of “proven” IPA a patient host factor (e.g. recent neutropenia, haematological malignancy) is required to meet the probable/possible definition, corticosteroids must be given at ≥0.3 mg·kg−1 for ≥3 weeks to classify as a host factor result.Invasive aspergillosis is difficult to diagnose in critically unwell patients without traditional host factors because radiological changes are usually nonspecific (e.g. infiltrates, consolidation or nodules), with features such as halo sign, air-crescent sign or cavitation being rare [24].
T69 12305-12616 Sentence denotes For these reasons Schauwvlieghe et al. [13] developed the modified AspICU criteria to help diagnose IAPA which (in the absence of histology) essentially relies on mycological evidence of Aspergillus spp. in the form of a positive bronchoalveolar lavage (BAL) culture or positive galactomannan (GM) in serum/BAL.
T70 12617-12809 Sentence denotes Applying these modified AspICU criteria, five cases of CAPA in table 1 were “proven”, 11 “putative” and 17 might be considered putative but with caveats which have been described in the table.
T71 12810-12989 Sentence denotes For example, in many cases a tracheal aspirate, rather than BAL, provided the only mycological evidence of invasive aspergillosis (in the absence of tracheobronchitis/cavitation).
T72 12990-13175 Sentence denotes There should therefore be caution about over-estimating the incidence of CAPA from such case series, which may include some patients with aspergillus colonisation or contamination only.
T73 13176-13618 Sentence denotes In the study by Alanio et al. [9] which reported evidence of CAPA in nine (33%) out of 27 ventilated patients who underwent BAL/tracheal aspirate, one case was defined based on a BAL GM of 0.89 (below the usual cut-off of 1.0), two based on tracheal aspirate rather than BAL culture, one based on a serum GM of 0.51 (cut-off being 0.50) and in four cases BAL culture was positive but BAL GM negative, which suggests a lack of tissue invasion.
T74 13619-13700 Sentence denotes Indeed, out of seven cases that were not treated with antifungals, five survived.
T75 13701-13900 Sentence denotes Accordingly, larger, prospective, multi-site studies are needed to refine the AspICU criteria for patients with COVID-19, as well as to estimate incidence and the impact of CAPA on survival [25, 26].
T76 13902-13928 Sentence denotes Diagnosis and risk of CAPA
T77 13929-14070 Sentence denotes Bearing these observations in mind, we argue that critically ill patients with COVID-19 and progressive features should be screened for CAPA.
T78 14071-14278 Sentence denotes We acknowledge that acquiring and handling clinical samples for microbiology is very challenging given the Hazard Group 3 rating of the SARS-CoV-2 virus, alongside an overburdened critical care service [27].
T79 14279-14490 Sentence denotes Ideally, screening for CAPA entails using a combination of computed tomography chest imaging and Aspergillus antigen tests on BAL and serum including GM ELISA or lateral-flow tests [28], or aspergillus PCR [29].
T80 14491-14675 Sentence denotes Whilst characteristic CT features of invasive aspergillosis such as nodules with halo sign were seen in 17.6% of severely ill COVID-19 patients, they were not confirmed to be IPA [30].
T81 14676-14964 Sentence denotes Given the lack of typical invasive aspergillosis features on CT in IAPA, the absence of classical findings such as cavitation should not be used to exclude CAPA; however, their presence can help support the diagnosis and reduce the burden of evidence placed on mycological investigations.
T82 14965-15171 Sentence denotes In a study of 26 ICU patients that were diagnosed with proven (non-CAPA/IAPA) IPA post mortem, serum GM had only 25% sensitivity in those that were not neutropenic (versus 70% in neutropenic patients) [31].
T83 15172-15228 Sentence denotes In contrast, BAL GM was 88–90% sensitive in both groups.
T84 15229-15411 Sentence denotes In the IAPA study by Schauwvlieghe et al. [13] serum GM testing performed better with 20 (65%) out of 31 positive cases, however BAL GM remained superior at 67 (88%) out of 76 cases.
T85 15412-15581 Sentence denotes In CAPA cases reported to date (table 1), BAL culture and GM had a sensitivity of 72.7% and 66.7%, respectively, but serum GM was positive in only six (21.4%) out of 28.
T86 15582-15765 Sentence denotes Moreover, of the five cases of proven CAPA reported to date, four were serum GM negative (table 1) [8], indicating that serum GM test performance might be inferior in diagnosing CAPA.
T87 15766-16049 Sentence denotes Therefore, bronchoscopy, including tracheobronchial inspection and BAL sampling for culture and GM should be the diagnostic gold standards whenever CAPA is suspected, providing this is compatible with local infection prevention and control guidance for aerosol-generating procedures.
T88 16050-16169 Sentence denotes A positive BAL GM (index >1.0) would be indicative of CAPA, whereas if the index is <0.5 CAPA is much less likely [31].
T89 16170-16307 Sentence denotes A positive serum GM result (≥ 0.5) would be highly suspicious for CAPA but a negative result should not be used to exclude the diagnosis.
T90 16308-16526 Sentence denotes Novel lateral-flow antigen tests may represent a locally implementable alternative to GM ELISA in the CL3 laboratory, but currently require validation in ICU patients without EORTC host factors including COVID-19 [28].
T91 16527-16747 Sentence denotes An Aspergillus-specific PCR test [29] may also be helpful and if positive could also lead to the application of molecular testing for the recognised markers of clinically or environmentally derived azole resistance [32].
T92 16748-16873 Sentence denotes A (1–3)-β-D-glucan (BDG) test on a serum sample is an easily obtained, early screening test when there is a suspicion of IPA.
T93 16874-17197 Sentence denotes Although performance might be superior to serum Aspergillus antigen testing for the detection of IPA in the ICU [33], BDG negativity cannot be used to rule out infection, with a 77% sensitivity determined across a heterogeneous population of invasive aspergillosis patients, and performance in CAPA as yet to be determined.
T94 17198-17471 Sentence denotes BDG positivity can occur due to a number of reasons in this patient cohort, however serial positive tests increases specificity and should prompt a diagnostic work-up including computed tomography and bronchoscopy and testing for Aspergillus antigen as outlined above [34].
T95 17472-17697 Sentence denotes While initiating antifungal treatment pre-emptively based on BDG positivity may be an improvement on empirical therapy, every effort should be made to utilise other more specific diagnostic tests to complement the BDG result.
T96 17698-17935 Sentence denotes Current guidelines advise against routine diagnostic bronchoscopy due to the risk of aerosol generation; recommending it only in patients in whom nasopharyngeal cultures are negative and BAL sampling will change clinical management [35].
T97 17936-18132 Sentence denotes In practice many patients with suspected CAPA undergo endotracheal sampling or non-directed BAL sampling only, and it is important that any case definition proposed for CAPA reflects this reality.
T98 18133-18354 Sentence denotes To acknowledge this, we propose a screening and diagnostic algorithm for CAPA, which has clinical (respiratory) deterioration and/or positive aspergillus sputum, or tracheal aspirate culture as its entry point (figure 1).
T99 18355-18599 Sentence denotes Although the host risk factors and clinical characteristics of CAPA are not yet understood, those individuals fulfilling the criteria for proven or probable aspergillosis [13, 14] should then be treated according to current guidelines [36, 37].
T100 18600-18875 Sentence denotes Importantly, now that adjunctive use of dexamethasone is likely to become widespread in the treatment of patients with severe COVID-19 [17], intensified screening for invasive aspergillosis is indicated to study the possible association between corticosteroid usage and CAPA.
T101 18876-19000 Sentence denotes FIGURE 1 Proposed screening and diagnostic algorithm for coronavirus disease-2019 associated pulmonary aspergillosis (CAPA).
T102 19001-19174 Sentence denotes BAL: bronchoalveolar lavage; BDG: (1–3)-β-D-glucan; TA: tracheal aspirate; Asp Ag: aspergillus antigen; AF: antifungal; IA: invasive aspergillosis; GM: galactomannan; EORTC:
T103 19175-19281 Sentence denotes European Organization for Research and Treatment of Cancer; NBL: non-directed bronchoalveolar lavage; PCP:
T104 19282-19537 Sentence denotes Pneumocystis pneumonia.Finally, the use of immunomodulatory drugs such as anakinra (recombinant interleukin-1Ra), tocilizumab (anti-interleukin-6) and Janus kinase inhibitors, currently undergoing trials for COVID-19, may also predispose patients to CAPA.
T105 19538-19761 Sentence denotes There is also an increased risk of Aspergillus exposure for patients who are treated in hospital wards or makeshift “hospital” facilities that do not meet ICU specifications for appropriate room ventilation and air changes.
T106 19762-19956 Sentence denotes It is also worth bearing in mind that pulmonary aspergillosis could develop into a chronic cavitary disease in a subset of patients, perhaps in those developing post-COVID-19 pulmonary fibrosis.
T107 19957-20146 Sentence denotes For these reasons, clinicians following up patients manifesting chronic respiratory problems following their primary COVID-19 infection should bear in mind longer term fungal complications.
T108 20148-20158 Sentence denotes Conclusion
T109 20159-20283 Sentence denotes Fungal infections present an additional threat in the challenging task of managing COVID-19 patients in outbreak conditions.
T110 20284-20485 Sentence denotes The pandemic of SARS-CoV-2 virus will undoubtedly involve CAPA, and the use of immunomodulatory therapy and impact of overburdened critical care services during this pandemic may exaggerate its impact.
T111 20486-20780 Sentence denotes More research is needed on the epidemiology and diagnosis of CAPA in patients with COVID-19, a need that is partially met as ongoing prospective multi-site clinical studies are extended to include this cohort (e.g. AspiFlu) [25] or are launched (CAPA) [26] in response to the COVID-19 pandemic.
T112 20782-20795 Sentence denotes Shareable PDF
T113 20796-20842 Sentence denotes This one-page PDF can be shared freely online.
T114 20843-20881 Sentence denotes Shareable PDF ERJ-02554-2020.Shareable
T115 20883-20905 Sentence denotes Supplementary Material
T116 20906-20934 Sentence denotes ERJ-02554-2020.Shareable.pdf

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 194-214 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T4 1044-1069 Phenotype denotes invasive fungal infection http://purl.obolibrary.org/obo/HP_0020101
T5 1838-1849 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T6 1861-1882 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T7 1933-1939 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T8 3067-3073 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T9 3218-3238 Phenotype denotes chronic lung disease http://purl.obolibrary.org/obo/HP_0006528
T10 3240-3244 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T11 3252-3258 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T12 3274-3283 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T13 3291-3309 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T14 3356-3367 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526
T15 4176-4180 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T16 4660-4677 Phenotype denotes air crescent sign http://purl.obolibrary.org/obo/HP_0032172
T17 4810-4819 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T18 4828-4832 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T19 4909-4918 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T20 5270-5288 Phenotype denotes Pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T21 5316-5325 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T22 5482-5491 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T23 5610-5634 Phenotype denotes Myelodysplastic syndrome http://purl.obolibrary.org/obo/HP_0002863
T24 6708-6714 Phenotype denotes Asthma http://purl.obolibrary.org/obo/HP_0002099
T25 7007-7018 Phenotype denotes atelectasis http://purl.obolibrary.org/obo/HP_0100750
T26 7189-7195 Phenotype denotes Asthma http://purl.obolibrary.org/obo/HP_0002099
T27 7275-7284 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T28 7911-7915 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T29 7934-7958 Phenotype denotes obstructive sleep apnoea http://purl.obolibrary.org/obo/HP_0002870
T30 8007-8025 Phenotype denotes reversed halo sign http://purl.obolibrary.org/obo/HP_0032983
T31 9106-9109 Phenotype denotes AML http://purl.obolibrary.org/obo/HP_0004808
T32 9265-9279 Phenotype denotes cardiomyopathy http://purl.obolibrary.org/obo/HP_0001638
T33 9478-9482 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T34 9496-9501 Phenotype denotes NSCLC http://purl.obolibrary.org/obo/HP_0030358
T35 9699-9703 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T36 9969-9975 Phenotype denotes Asthma http://purl.obolibrary.org/obo/HP_0002099
T37 10249-10266 Phenotype denotes Pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T38 10315-10330 Phenotype denotes pulmonary cysts http://purl.obolibrary.org/obo/HP_0032445
T39 10817-10837 Phenotype denotes chronic lung disease http://purl.obolibrary.org/obo/HP_0006528
T40 11168-11200 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T41 11332-11338 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T42 11481-11484 Phenotype denotes AML http://purl.obolibrary.org/obo/HP_0004808
T43 11486-11509 Phenotype denotes acute myeloid leukaemia http://purl.obolibrary.org/obo/HP_0004808
T44 11529-11534 Phenotype denotes NSCLC http://purl.obolibrary.org/obo/HP_0030358
T45 11550-11561 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526
T46 11824-11835 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T47 12256-12273 Phenotype denotes air-crescent sign http://purl.obolibrary.org/obo/HP_0032172
T48 19227-19233 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T49 19937-19955 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T50 20029-20049 Phenotype denotes respiratory problems http://purl.obolibrary.org/obo/HP_0002795

2_test

Id Subject Object Predicate Lexical cue
32703771-22895826-29390903 1706-1708 22895826 denotes 12
32703771-30076119-29390903 1706-1708 30076119 denotes 12
32703771-28387526-29390903 1706-1708 28387526 denotes 12
32703771-28387526-29390904 1975-1977 28387526 denotes 14
32703771-27704024-29390905 1979-1981 27704024 denotes 15
32703771-12890854-29390906 2349-2350 12890854 denotes 5
32703771-32171076-29390907 2430-2431 32171076 denotes 1
32703771-22517788-29390908 12300-12302 22517788 denotes 24
32703771-30076119-29390909 12345-12347 30076119 denotes 13
32703771-32445626-29390910 13207-13208 32445626 denotes 9
32703771-28680526-29390911 14461-14463 28680526 denotes 28
32703771-32130038-29390912 14671-14673 32130038 denotes 30
32703771-17885264-29390913 15167-15169 17885264 denotes 31
32703771-30076119-29390914 15272-15274 30076119 denotes 13
32703771-32488446-29390915 15682-15683 32488446 denotes 8
32703771-17885264-29390916 16165-16167 17885264 denotes 31
32703771-28680526-29390917 16522-16524 28680526 denotes 28
32703771-19926038-29390918 16743-16745 19926038 denotes 32
32703771-27475024-29390919 16987-16989 27475024 denotes 33
32703771-21880959-29390920 17467-17469 21880959 denotes 34
32703771-30076119-29390921 18527-18529 30076119 denotes 13
32703771-28387526-29390922 18531-18533 28387526 denotes 14
32703771-27365388-29390923 18591-18593 27365388 denotes 36
32703771-29544767-29390924 18595-18597 29544767 denotes 37