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PMC:7376845 / 25600-26840 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T186 36-44 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T187 72-79 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T188 135-140 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T189 203-211 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T190 465-472 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T191 562-569 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T192 837-845 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T193 868-875 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T194 934-939 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T195 1056-1061 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T196 1147-1155 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
627 115-134 Disease denotes SARS-CoV-2 infected MESH:C000657245
634 161-165 Species denotes H7N7 Tax:119218
635 266-276 Species denotes SARS-CoV-2 Tax:2697049
636 278-325 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
637 167-176 Species denotes influenza Tax:11320
638 180-184 Species denotes H7N7 Tax:119218
639 234-243 Disease denotes infection MESH:D007239
648 397-402 Species denotes human Tax:9606
649 448-458 Species denotes SARS-CoV-2 Tax:2697049
650 586-590 Species denotes H7N7 Tax:119218
651 855-865 Species denotes SARS-CoV-2 Tax:2697049
652 901-905 Species denotes H7N7 Tax:119218
653 573-582 Species denotes influenza Tax:11320
654 888-897 Species denotes influenza Tax:11320
655 407-413 Chemical denotes CR3022
663 989-999 Species denotes SARS-CoV-2 Tax:2697049
664 1110-1125 Chemical denotes Alexa Fluor 488
665 1197-1226 Chemical denotes 4′,6-diamidino-2-phenylindole MESH:C007293
666 1228-1232 Chemical denotes DAPI MESH:C007293
667 950-958 Disease denotes infected MESH:D007239
668 975-983 Disease denotes infected MESH:D007239
669 1041-1050 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T224 115-123 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T225 115-119 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T226 167-176 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T227 234-243 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T228 245-247 Disease denotes OD http://purl.obolibrary.org/obo/MONDO_0017178
T229 266-274 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T230 266-270 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T231 278-325 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T232 278-311 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T233 448-456 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T234 448-452 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T235 573-582 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T236 855-863 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T237 855-859 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T238 888-897 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T239 989-997 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T240 989-993 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T241 1041-1050 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T275 67-68 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T276 83-84 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T277 112-113 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T278 135-140 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T279 177-178 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T280 327-328 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T281 397-402 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T282 435-436 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T283 583-584 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T284 592-597 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T285 610-611 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T286 898-899 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T287 923-924 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T288 926-939 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T289 1056-1061 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T227 72-79 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T228 141-143 Chemical denotes HA http://purl.obolibrary.org/obo/CHEBI_73924
T229 465-472 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T230 559-561 Chemical denotes HA http://purl.obolibrary.org/obo/CHEBI_73924
T231 562-569 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T232 868-875 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T233 907-909 Chemical denotes HA http://purl.obolibrary.org/obo/CHEBI_73924
T234 1110-1125 Chemical denotes Alexa Fluor 488 http://purl.obolibrary.org/obo/CHEBI_52661
T235 1116-1121 Chemical denotes Fluor http://purl.obolibrary.org/obo/CHEBI_24061
T236 1214-1226 Chemical denotes phenylindole http://purl.obolibrary.org/obo/CHEBI_48559
T237 1228-1232 Chemical denotes DAPI http://purl.obolibrary.org/obo/CHEBI_51231

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T198 0-140 Sentence denotes Figure 4 Performance of monoclonal antibody 1A9 for detection of (A) S protein in a sandwich ELISA format and (B) SARS-CoV-2 infected cells
T199 141-326 Sentence denotes HA: haemagglutinin; H7N7: influenza A (H7N7); mAb: monoclonal antibody; MOI: multiplicity of infection; OD: optical density; SARS-CoV-2: severe acute respiratory syndrome coronavirus 2.
T200 327-329 Sentence denotes A.
T201 330-473 Sentence denotes Sandwich ELISA assay to determine mAb 1A9 ability to pair with the human mAb CR3022 for the detection of a His-tagged SARS-CoV-2 spike protein.
T202 474-547 Sentence denotes 1A9 and CR3022 were used as capture and detector antibodies respectively.
T203 548-629 Sentence denotes His-tagged HA protein of influenza A (H7N7) virus was used as a negative control.
T204 630-697 Sentence denotes Averaged readings across three replicate experiments are presented.
T205 698-778 Sentence denotes Error bars represent standard deviations across the three replicate experiments.
T206 779-922 Sentence denotes Asterisks indicate significantly increased binding of the antibody pairs to SARS-CoV-2 S protein compared to influenza A (H7N7) HA at p < 0.05.
T207 923-925 Sentence denotes B.
T208 926-1024 Sentence denotes Vero E6 cells were mock-infected (left panel) or infected with SARS-CoV-2 (right panel; MOI of 1).
T209 1025-1164 Sentence denotes At 24 hour post infection, the cells were stained with mAb 1A9 (5 µg/mL) followed by Alexa Fluor 488-conjugated secondary antibody (green).
T210 1165-1240 Sentence denotes Nuclei were counterstained with 4′,6-diamidino-2-phenylindole (DAPI; blue).