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PMC:7376845 / 15912-16388 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T96 199-209 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T97 315-322 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
380 100-105 Species denotes human Tax:9606
381 118-131 Species denotes coronaviruses Tax:11118
382 227-237 Species denotes SARS-CoV-2 Tax:2697049
383 242-250 Species denotes SARS-CoV Tax:694009
384 435-448 Species denotes coronaviruses Tax:11118
385 459-465 Species denotes humans Tax:9606
386 132-136 Species denotes 229E Tax:11137
387 138-142 Species denotes NL63 Tax:277944
388 144-148 Species denotes OC43 Tax:31631
389 153-157 Species denotes HKU1 Tax:290028
390 91-95 Disease denotes MERS MESH:D018352
391 416-420 Disease denotes MERS MESH:D018352

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T141 106-117 Disease denotes common cold http://purl.obolibrary.org/obo/MONDO_0005709
T142 227-235 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T143 227-231 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T144 242-250 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T145 242-246 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T173 55-58 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T174 75-78 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T175 100-105 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T176 459-465 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T141 199-204 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T142 205-209 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T143 315-322 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T113 0-476 Sentence denotes When compared with additional reference sequences from bat RaTG13 (closest bat precursor), MERS and human common cold coronaviruses 229E, NL63, OC43 and HKU1 (Figure 1), it becomes apparent that the amino-acid identity between SARS-CoV-2 and SARS-CoV-1 is much higher in this region (93%, Table) than over the full protein length (78%, Table) and the similarity drops sharply (< 40% in this region) when considering MERS and the other coronaviruses infecting humans regularly.